Sequence of DPV Chloris striate mosaic virus
Chloris striate mosaic virus isolate AU-1658-2004, complete genome.
ACC No: JQ948057
Dated: 2012-10-14 | Length: 2749 | CRC: 855145748
ID JQ948057; SV 1; circular; genomic DNA; STD; VRL; 2749 BP.
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AC JQ948057;
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DT 26-AUG-2012 (Rel. 113, Created)
DT 14-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE Chloris striate mosaic virus isolate AU-1658-2004, complete genome.
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KW .
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OS Chloris striate mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2749
RX PUBMED; 22841490.
RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA Martin D.P., Varsani A.;
RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL Virus Res. 169(1):127-136(2012).
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RN [2]
RP 1-2749
RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT ;
RL Submitted (17-APR-2012) to the INSDC.
RL School of Biological Sciences, University of Canterbury, Private bag 4800,
RL Christchurch 8140, New Zealand
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 5.2.9
CC Coverage :: 100
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2749
FT /organism="Chloris striate mosaic virus"
FT /host="Paspalum dilatatum"
FT /isolate="AU-1658-2004"
FT /mol_type="genomic DNA"
FT /country="Australia"
FT /lat_lon="27.78 S 152.73 E"
FT /collection_date="2004"
FT /note="genotype: CSMV-A2"
FT /db_xref="taxon:10820"
FT CDS 1. .342
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="AFN80681.1"
FT /translation="MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACIL
FT VFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASV
FT DLPSVSRVS"
FT CDS 339. .1064
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AFN80682.1"
FT /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF
FT VWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR
FT PVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG
FT SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG
FT AVFVARGNVRVYFKSVGNQ"
FT CDS complement(join(1263. .1664,1751. .2437))
FT /codon_start=1
FT /product="Rep"
FT /protein_id="AFN80684.1"
FT /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD
FT LDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT ATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT LQQELYTVRSPGVRRRSLYICGPIRTGKTTWARSLGTHHYWQHSVNFLEEWNCQAQFNI
FT IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQV
FT DWFHGNAVVYHLLPGETFIPSE"
FT CDS complement(1550. .2437)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="AFN80683.1"
FT /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD
FT LDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT ATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSADQFVPERQL
FT GPEVLELITTGSTQ"
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SQ Sequence 2749 BP; 582 A; 720 C; 755 G; 692 T; 0 other;
jq948057 Length: 2749 14-OCT-2012 Type: N Check: 124 ..
1 atgcagtacc aggggtacga gcagctcagt agatctggat ccgtggagca
51 acccagcccc ggtgctagct ttgctttccc ggtgaaggtg acagccctcg
101 tctgtttcgc agcgattgtt ggagcctgta ttcttgtatt cttgtacaag
151 acgtgcattg cggactgcat aacgcagtac cggcttacgg actacggctg
201 tcacacttcg gctgggttcg gaggtgcgtt acccgtgacc tctgcgcaag
251 ctagtgctgg taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta
301 caggcgtccg tggatctacc ctccgtaagt agggtgtcat gagtcctgcc
351 agctcatgga agaggaagag gccctcttct tcctccgctc aggcgtctaa
401 gaagcgccgc gtgtacaggc ctgctgtttc acgttctctc gctcggcgag
451 aacctctgca ggtgcaagac tttgtctggg atacagatgt ggctttcaat
501 aggggaggag gatgctacct cctcaccagc tatgctcgag gctctgccga
551 gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaacc
601 tggggtgtgc tatctccggg acgatgcagc aatattgcat cagctcccga
651 ccggtctgct ggattgtata cgacgcggcc cccactggct ctgctgttac
701 cccgaaggac atcttcgggt acccggaagg attagttaac tggcctacta
751 cttggaaggt ggccagagcg gtgtcccacc gcttcatagt gaagcgccga
801 tgggtcttca ccatggagtc caacggctcg cgcttcgacc gtgactacac
851 caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg
901 cgaagcagtt gggcgtgcgg accgagtgga agaacgctga aggcggagac
951 ttcggcgaca taaagagcgg agctctttac ctagtcatgg ctccggctaa
1001 cggagctgtc tttgtagccc gcggcaatgt ccgcgtgtat tttaagtctg
1051 ttgggaatca gtgattcccc agacttcatt ttcaataaac tgtgagagtt
1101 tgcttgccaa acaacataat ttcattcata acgatggcgc agtatgcgca
1151 atacatttaa aagaagggcg gacaggacaa aggcgggcgg ctaagggaag
1201 ccgcaagggg caacaccaca tcccaagaat gagttttcga atatgcagcc
1251 gctggcttca cgctattccg aaggaatgaa ggtttcccct gggagaaggt
1301 gatacaccac ggcgttgccg tgaaaccagt cgacctgttg ggtcgacatc
1351 gactgcagcc agtcttcatc ctcgtttacg aggataatac atggaatccc
1401 gttggggatt cttttcttct tcccgtactt ggggtttacc gtcaggtcat
1451 actggctgcc gacgagtccc ttccaacaag ggacgaactt gaacgggatg
1501 tcatcaatga tgttgaactg ggcctggcag ttccattcct ctaggaagtt
1551 cactgagtgc tgccagtagt gatgagttcc aagacttctg gcccaagttg
1601 tctttccggt acgaattggt ccgcagatgt acaggcttcg tctccggact
1651 ccagggctcc tgacctggtt aggtcagaca tccattggag gtcaatacgt
1701 gcttgttcct ccgaaatacc tgcatgcaga ctgagggctt gaggacttac
1751 agtatacagc tcctgctgga gccattctcc tatgaccgga tggtcggaca
1801 tgtcccttga cgcgtatggc gcggagtagg tttgaggagg gtcagggaac
1851 agggcatttg cactgtattg gaattgctgt aggcgtaccg cccattcgaa
1901 agggaaactc tttcgaacca tgctcagata ttcgtccctg gacgtggcgt
1951 ttgccatgat ttgtttcatg gtcttgtccc tagaggccga ctgggtcgga
2001 ctcctgttga ccttgggttt caggaatttt ccaaattccc agctactctc
2051 aggatgtttc atacagtatt tcagagtact ggctggctgc cttgcagctt
2101 ggatatttgg atgaaattca tccaggtcaa agtattttgg agaggtggtt
2151 ctgaaatttg cttcgagttg gacgaaggca tgtaagtggg gctcaccgtc
2201 agcatggaat tccctggaaa tgtaaatata attacatttc ttatttttta
2251 gacggtcagc aattttctga ccagcctctt cgggactgat aggacacctg
2301 ggataggtga ggaagacatg tttagtcctc agggagaagg ccttctcccc
2351 aggcgtcact tgccctccgc gagatggcac ttgtacggaa gtgccacttc
2401 cctccccctc gctctcactg acaggcaggg acgacataat aaaagacgac
2451 gtggcttgat ggacagccgt aggatttgtt ctgagatgtg gactccgagc
2501 aaaactatct ctaataccag ttgcccacct gccgagtgcc ctcttcggct
2551 tttataggcc taacaggccg gctctttgca tgggcggggg ggcaaccata
2601 atattaccgc ccccccggcc catgcgaggg cccatgctca acgggtcccg
2651 agcggctttg gctttcacat gggcttgtcc cccgcgatgc gatctgccct
2701 gccatgcttt ggcggcttta taaagccgtt ctcagacctt tgttttcca