Sequence of DPV Chloris striate mosaic virus
Chloris striate mosaic virus isolate AU-1658-2004, complete genome.
ACC No: JQ948057
Dated: 2012-10-14 | Length: 2749 | CRC: 855145748
ID JQ948057; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC JQ948057; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Chloris striate mosaic virus isolate AU-1658-2004, complete genome. XX KW . XX OS Chloris striate mosaic virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2749 RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2749 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2749 FT /organism="Chloris striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-1658-2004" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.78 S 152.73 E" FT /collection_date="2004" FT /note="genotype: CSMV-A2" FT /db_xref="taxon:10820" FT CDS 1. .342 FT /codon_start=1 FT /product="movement protein" FT /protein_id="AFN80681.1" FT /translation="MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACIL FT VFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASV FT DLPSVSRVS" FT CDS 339. .1064 FT /codon_start=1 FT /product="capsid protein" FT /protein_id="AFN80682.1" FT /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF FT VWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR FT PVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG FT SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG FT AVFVARGNVRVYFKSVGNQ" FT CDS complement(join(1263. .1664,1751. .2437)) FT /codon_start=1 FT /product="Rep" FT /protein_id="AFN80684.1" FT /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD FT LDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN FT ATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW FT LQQELYTVRSPGVRRRSLYICGPIRTGKTTWARSLGTHHYWQHSVNFLEEWNCQAQFNI FT IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQV FT DWFHGNAVVYHLLPGETFIPSE" FT CDS complement(1550. .2437) FT /codon_start=1 FT /product="RepA" FT /protein_id="AFN80683.1" FT /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD FT LDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN FT ATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW FT LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSADQFVPERQL FT GPEVLELITTGSTQ" XX SQ Sequence 2749 BP; 582 A; 720 C; 755 G; 692 T; 0 other; jq948057 Length: 2749 14-OCT-2012 Type: N Check: 124 .. 1 atgcagtacc aggggtacga gcagctcagt agatctggat ccgtggagca 51 acccagcccc ggtgctagct ttgctttccc ggtgaaggtg acagccctcg 101 tctgtttcgc agcgattgtt ggagcctgta ttcttgtatt cttgtacaag 151 acgtgcattg cggactgcat aacgcagtac cggcttacgg actacggctg 201 tcacacttcg gctgggttcg gaggtgcgtt acccgtgacc tctgcgcaag 251 ctagtgctgg taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta 301 caggcgtccg tggatctacc ctccgtaagt agggtgtcat gagtcctgcc 351 agctcatgga agaggaagag gccctcttct tcctccgctc aggcgtctaa 401 gaagcgccgc gtgtacaggc ctgctgtttc acgttctctc gctcggcgag 451 aacctctgca ggtgcaagac tttgtctggg atacagatgt ggctttcaat 501 aggggaggag gatgctacct cctcaccagc tatgctcgag gctctgccga 551 gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaacc 601 tggggtgtgc tatctccggg acgatgcagc aatattgcat cagctcccga 651 ccggtctgct ggattgtata cgacgcggcc cccactggct ctgctgttac 701 cccgaaggac atcttcgggt acccggaagg attagttaac tggcctacta 751 cttggaaggt ggccagagcg gtgtcccacc gcttcatagt gaagcgccga 801 tgggtcttca ccatggagtc caacggctcg cgcttcgacc gtgactacac 851 caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg 901 cgaagcagtt gggcgtgcgg accgagtgga agaacgctga aggcggagac 951 ttcggcgaca taaagagcgg agctctttac ctagtcatgg ctccggctaa 1001 cggagctgtc tttgtagccc gcggcaatgt ccgcgtgtat tttaagtctg 1051 ttgggaatca gtgattcccc agacttcatt ttcaataaac tgtgagagtt 1101 tgcttgccaa acaacataat ttcattcata acgatggcgc agtatgcgca 1151 atacatttaa aagaagggcg gacaggacaa aggcgggcgg ctaagggaag 1201 ccgcaagggg caacaccaca tcccaagaat gagttttcga atatgcagcc 1251 gctggcttca cgctattccg aaggaatgaa ggtttcccct gggagaaggt 1301 gatacaccac ggcgttgccg tgaaaccagt cgacctgttg ggtcgacatc 1351 gactgcagcc agtcttcatc ctcgtttacg aggataatac atggaatccc 1401 gttggggatt cttttcttct tcccgtactt ggggtttacc gtcaggtcat 1451 actggctgcc gacgagtccc ttccaacaag ggacgaactt gaacgggatg 1501 tcatcaatga tgttgaactg ggcctggcag ttccattcct ctaggaagtt 1551 cactgagtgc tgccagtagt gatgagttcc aagacttctg gcccaagttg 1601 tctttccggt acgaattggt ccgcagatgt acaggcttcg tctccggact 1651 ccagggctcc tgacctggtt aggtcagaca tccattggag gtcaatacgt 1701 gcttgttcct ccgaaatacc tgcatgcaga ctgagggctt gaggacttac 1751 agtatacagc tcctgctgga gccattctcc tatgaccgga tggtcggaca 1801 tgtcccttga cgcgtatggc gcggagtagg tttgaggagg gtcagggaac 1851 agggcatttg cactgtattg gaattgctgt aggcgtaccg cccattcgaa 1901 agggaaactc tttcgaacca tgctcagata ttcgtccctg gacgtggcgt 1951 ttgccatgat ttgtttcatg gtcttgtccc tagaggccga ctgggtcgga 2001 ctcctgttga ccttgggttt caggaatttt ccaaattccc agctactctc 2051 aggatgtttc atacagtatt tcagagtact ggctggctgc cttgcagctt 2101 ggatatttgg atgaaattca tccaggtcaa agtattttgg agaggtggtt 2151 ctgaaatttg cttcgagttg gacgaaggca tgtaagtggg gctcaccgtc 2201 agcatggaat tccctggaaa tgtaaatata attacatttc ttatttttta 2251 gacggtcagc aattttctga ccagcctctt cgggactgat aggacacctg 2301 ggataggtga ggaagacatg tttagtcctc agggagaagg ccttctcccc 2351 aggcgtcact tgccctccgc gagatggcac ttgtacggaa gtgccacttc 2401 cctccccctc gctctcactg acaggcaggg acgacataat aaaagacgac 2451 gtggcttgat ggacagccgt aggatttgtt ctgagatgtg gactccgagc 2501 aaaactatct ctaataccag ttgcccacct gccgagtgcc ctcttcggct 2551 tttataggcc taacaggccg gctctttgca tgggcggggg ggcaaccata 2601 atattaccgc ccccccggcc catgcgaggg cccatgctca acgggtcccg 2651 agcggctttg gctttcacat gggcttgtcc cccgcgatgc gatctgccct 2701 gccatgcttt ggcggcttta taaagccgtt ctcagacctt tgttttcca