Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl Multan virus isolate SZ2 segment DNA-A, complete sequence.
ACC No: JQ963631
Dated: 2012-07-18 | Length: 2737 | CRC: 1648508386
ID JQ963631; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC JQ963631; XX DT 18-JUL-2012 (Rel. 113, Created) DT 18-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Cotton leaf curl Multan virus isolate SZ2 segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2737 RA Tang Y.F., He Z.F.; RT "Molecular characterization of Cotton leaf curl Multan virus and its RT satellite DNA that infects Hibiscus rosa-sinensis"; RL Unpublished. XX RN [2] RP 1-2737 RA Tang Y.F., He Z.F.; RT ; RL Submitted (21-APR-2012) to the INSDC. RL Plant Protection Research Institute, Guangdong Academy of Agricultural RL Sciences, Jinying Rd No. 7, Tianhe District, Guangzhou, Guangdong 510640, RL China XX FH Key Location/Qualifiers FH FT source 1. .2737 FT /organism="Cotton leaf curl Multan virus" FT /segment="DNA-A" FT /host="Hibiscus rosa-sinensis" FT /isolate="SZ2" FT /mol_type="genomic DNA" FT /country="China" FT /collected_by="Z.F.He" FT /collection_date="23-Oct-2011" FT /db_xref="taxon:223252" FT gene 116. .481 FT /gene="AV2" FT CDS 116. .481 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /protein_id="AFN55001.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL FT ICILRSRNYVEASCRYRHFNARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNISDVQKSGCSKGL" FT gene 276. .1046 FT /gene="AV1" FT CDS 276. .1046 FT /codon_start=1 FT /gene="AV1" FT /product="capsid protein" FT /protein_id="AFN55000.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAVPIVRVTKQQAWT FT NRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1049. .1453) FT /gene="AC3" FT CDS complement(1049. .1453) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /protein_id="AFN55004.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQILKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY" FT gene complement(1146. .1598) FT /gene="AC2" FT CDS complement(1146. .1598) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /protein_id="AFN55003.1" FT /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPNPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPNPQISEQSRCNFN" FT gene complement(1495. .2586) FT /gene="AC1" FT CDS complement(1495. .2586) FT /codon_start=1 FT /gene="AC1" FT /product="Rep protein" FT /protein_id="AFN55002.1" FT /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK FT VCRELHEDGSPHLHVLIQFEGKLICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT gene complement(2127. .2429) FT /gene="AC4" FT CDS complement(2127. .2429) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /protein_id="AFN55005.1" FT /translation="MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQA FT QMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN" XX SQ Sequence 2737 BP; 706 A; 544 C; 643 G; 844 T; 0 other; jq963631 Length: 2737 18-JUL-2012 Type: N Check: 4473 .. 1 accggatggc cgcgcgattt ttttgtgggc cccctattta tgagattgct 51 ccctcaaagc taaataacgc tcccgcccac tataagtact tgcgcactaa 101 gtttcaaatt caaacatgtg ggatccattg ttaaacgaat ttcctgatac 151 ggtgcacggg tttcggtgta tgctttctgt caaatatttg caacttttgt 201 cgcaggatta ttcaccggat accctaggtt acgatttaat acgggattta 251 atctgtattc tacgttcccg taattatgtc gaagcgagct gcagatatcg 301 tcatttcaac gcccgcgtcg aaagtacgtc ggcgtctgaa cttcggcagc 351 ccatacacca accgtgttgc tgtccccatt gtccgcgtca caaaacaaca 401 ggcatggaca aacaggccta tgaacaggaa gcccagaata tatcggatgt 451 acagaagtcc ggatgttcca aagggttgtg aaggcccatg taaggtacag 501 tcttttgagt ccagacatga tgttgttcat attggtaagg taatgtgtat 551 ttctgatgtt actcgtggtg tcggtttgac ccatcgtatt ggtaaacgtt 601 tttgtgtcaa gtcagtttat gttttaggta agatatggat ggatgaaaat 651 ataaagacca ggaatcacac gaattcggtc atgttctttt tagttcgcga 701 tcgacgacct gttgacaaac ctcaggattt tggtgaggta ttcaatatgt 751 ttgataacga acccagtaca gcaactgtga agaatagtca tagggaccgt 801 tatcaggtgt tgaggaaatg gcatgcaacc gttacgggtg gtcaatatgc 851 gagtaaggaa caggctttgg tcaagaagtt tgtcagagtt aacaattatg 901 ttgtttacaa tcaacaggaa gcaggaaaat acgagaatca tacggaaaat 951 gcgttaatgc tttatatggc ttgtacccac gctagcaacc ctgtttatgc 1001 tacgttgaag attaggatat atttttatga ctctgtaacg aattgatgtt 1051 aataaagttt gaattctatt tctgaatatt gatctacata catagtttgt 1101 tggattacat tgtacaatac atgttctaca gctttaataa ctaaattaat 1151 tgaaattaca ccgagattgt tcagatattt gaggatttgg gttttgaata 1201 cccttaagaa aagaccagtc tgagggtgta aggtcgtcca gattcggaag 1251 gttagaaaac acttgtgcag tcccagagct ttccgagtgt tgtagttgaa 1301 ctggattcgg atcgtgagta tgtccatatt cgtcgtgaat ggacggttga 1351 agtggctgat tatcttgaaa taaaggggat ttggaacctc ccagatatat 1401 gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc 1451 catggttgtg gcagttgatt gacagataat aagaacaccc gcattcaaga 1501 tctactctcc tcctcctgtt gcgtctcttc gcttccctgt gctgtacttt 1551 gattggaagc tgagtacagt ggtccttcga gagtgatgaa gatcgcattt 1601 tttagggccc aattctttaa tgctgtgttt ttttcctcgt tgaggaattc 1651 cttataactg ctgttgggac caggattgca caagaagatt gtcggtattc 1701 cgcctttaat ttgaactggc ttaccgtatt ttgtgttgga ctgccagtct 1751 ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat gcgggtcgac 1801 gtcatcaatg acgttgtacc aggcgtcgtt actgtatact ttgggactca 1851 ggtccagatg tccgcacaaa tagttatgtg gtcccaatga cctagcccac 1901 atcgtctttc ccgtacgact atctccctca attactatac tccgaggtct 1951 aaggggccgc gcagcggcat cgacaacgtt atccaacgcc caaacttgaa 2001 gttcttctgg aacttgatcg aacgaagaaa aagaaaaagg agaaacataa 2051 ggagctggtg gctcctgaaa gatcctgtct agatttgcat ttaaattatg 2101 aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag 2151 cctctgactt acttcccgcg ttaagcgctg cggcgtaagc gtcgttggct 2201 gtctgttgtc ctcctcttgc tgatcttcca tcgatctgaa actctcccca 2251 ctcgagagtg tccccgtcct tgtcgatgta gtccttgaca tctgagcttg 2301 atttagctcc ctgaatgttc ggatggaaat gtgctgacct ggttggggat 2351 accaggtcga agaatctgtt attcgtgcag atgagtttgc cctcgaactg 2401 gatgagcaca tggagatgag ggctcccatc ttcgtgtaac tctctgcaga 2451 ctttgatgta ttttttattc gagggtgtgt tgatggcttg aatttgggaa 2501 agtgcttcct ctttagtgag tgagcactgt ggataagtga ggaaataatt 2551 tttggcttgt attttaaaac gtttgggggg agccattgac tttggtcaat 2601 tggagacaac tgattggatt ttactctggc aattggagac tggagacaat 2651 ttatagtgtc tccaaatggc attatcgtaa tttgagaaat catttcaaaa 2701 tcctcacgct ccaaaaagcg gccatccgta taatatt