Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate PepMV-KK coat protein (CP) gene, complete cds.
ACC No: JQ979170
Dated: 2012-05-13 | Length: 714 | CRC: 832737094
ID JQ979170; SV 1; linear; genomic RNA; STD; VRL; 714 BP. XX AC JQ979170; XX DT 13-MAY-2012 (Rel. 112, Created) DT 13-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Pepino mosaic virus isolate PepMV-KK coat protein (CP) gene, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-714 RA Zizyte M., Sneideris D., Zitikaite I., Urbanaviciene L., Staniulis J.; RT "Pepino mosaic virus infecting tomato plants in Lithuania"; RL Unpublished. XX RN [2] RP 1-714 RA Zizyte M., Sneideris D.; RT ; RL Submitted (26-APR-2012) to the INSDC. RL Institute of Botany, Nature Research Centre, Zaliuju ezeru 49, Vilnius, RL Vilnius 08406, Lithuania XX FH Key Location/Qualifiers FH FT source 1. .714 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon esculentum" FT /isolate="PepMV-KK" FT /mol_type="genomic RNA" FT /country="Lithuania" FT /collected_by="M. Zizyte, D. Sneideris" FT /collection_date="2011" FT /PCR_primers="fwd_name: peptgb-f, fwd_seq: FT cacaccagaagtgcttaaagca, rev_name: peputr-r, rev_seq: FT ctctgattaagtttcgagtg" FT /db_xref="taxon:112229" FT gene 1. .714 FT /gene="CP" FT CDS 1. .714 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /protein_id="AFJ15524.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 714 BP; 193 A; 193 C; 146 G; 182 T; 0 other; jq979170 Length: 714 13-MAY-2012 Type: N Check: 1148 .. 1 atggaaaacc aacctacagc ttctaaccca tcagatgtac caccaactgc 51 tgctcaagct ggtgcccaga gcccagccga cttctcaaat cctaatacag 101 ctccttccct aagtgatttg aagaagatca aatacgtgtc aactgtcact 151 tcagttgcca cgcctgctga aattgaggcc cttggcaaga tctttactgc 201 catgggttta gcagccaatg agaccggacc tgccatgtgg gacctcgctc 251 gtgcttatgc tgatgtgcaa agttcaaaat ctgcacaact tataggtgcc 301 acaccatcca accctgcttt gtctagacgt gcacttgctg cacagtttga 351 tcgtatcaat atcacaccca gacaattctg catgtatttt gcaaaaattg 401 tttggaacat actgttagac agcaatgtgc cacctgccaa ctgggcaaaa 451 ttgggctatc aggaagatac caagtttgct gcttttgact tctttgatgg 501 agtcacaaat ccagctagtc tacagcctgc tgatggccta atcaggcagc 551 ccaatgaaaa agagcttgct gctcactcgg ttgctaaata tggtgccctt 601 gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt 651 tacacgtggt cacatgggcg gcgccaacac tatgtacgca attgatgcac 701 ctcctgaact ttaa