Sequence of DPV Pepino mosaic virus

Pepino mosaic virus isolate PepMV-KK coat protein (CP) gene, complete cds.

ACC No: JQ979170

Dated: 2012-05-13 | Length: 714 | CRC: 832737094

                
ID   JQ979170; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
XX
AC   JQ979170;
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DT   13-MAY-2012 (Rel. 112, Created)
DT   13-MAY-2012 (Rel. 112, Last updated, Version 1)
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DE   Pepino mosaic virus isolate PepMV-KK coat protein (CP) gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Alphaflexiviridae; Potexvirus.
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RN   [1]
RP   1-714
RA   Zizyte M., Sneideris D., Zitikaite I., Urbanaviciene L., Staniulis J.;
RT   "Pepino mosaic virus infecting tomato plants in Lithuania";
RL   Unpublished.
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RN   [2]
RP   1-714
RA   Zizyte M., Sneideris D.;
RT   ;
RL   Submitted (26-APR-2012) to the INSDC.
RL   Institute of Botany, Nature Research Centre, Zaliuju ezeru 49, Vilnius,
RL   Vilnius 08406, Lithuania
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FH   Key             Location/Qualifiers
FH
FT   source          1. .714
FT                   /organism="Pepino mosaic virus"
FT                   /host="Lycopersicon esculentum"
FT                   /isolate="PepMV-KK"
FT                   /mol_type="genomic RNA"
FT                   /country="Lithuania"
FT                   /collected_by="M. Zizyte, D. Sneideris"
FT                   /collection_date="2011"
FT                   /PCR_primers="fwd_name: peptgb-f, fwd_seq:
FT                   cacaccagaagtgcttaaagca, rev_name: peputr-r, rev_seq:
FT                   ctctgattaagtttcgagtg"
FT                   /db_xref="taxon:112229"
FT   gene            1. .714
FT                   /gene="CP"
FT   CDS             1. .714
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AFJ15524.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 714 BP; 193 A; 193 C; 146 G; 182 T; 0 other;

jq979170 Length: 714  13-MAY-2012  Type: N  Check: 1148  ..

       1  atggaaaacc aacctacagc ttctaaccca tcagatgtac caccaactgc
      51  tgctcaagct ggtgcccaga gcccagccga cttctcaaat cctaatacag
     101  ctccttccct aagtgatttg aagaagatca aatacgtgtc aactgtcact
     151  tcagttgcca cgcctgctga aattgaggcc cttggcaaga tctttactgc
     201  catgggttta gcagccaatg agaccggacc tgccatgtgg gacctcgctc
     251  gtgcttatgc tgatgtgcaa agttcaaaat ctgcacaact tataggtgcc
     301  acaccatcca accctgcttt gtctagacgt gcacttgctg cacagtttga
     351  tcgtatcaat atcacaccca gacaattctg catgtatttt gcaaaaattg
     401  tttggaacat actgttagac agcaatgtgc cacctgccaa ctgggcaaaa
     451  ttgggctatc aggaagatac caagtttgct gcttttgact tctttgatgg
     501  agtcacaaat ccagctagtc tacagcctgc tgatggccta atcaggcagc
     551  ccaatgaaaa agagcttgct gctcactcgg ttgctaaata tggtgccctt
     601  gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt
     651  tacacgtggt cacatgggcg gcgccaacac tatgtacgca attgatgcac
     701  ctcctgaact ttaa