Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDJNi11 P8 gene, complete cds.
ACC No: JX047213
Dated: 2013-05-31 | Length: 1936 | CRC: -1868189844
ID JX047213; SV 1; linear; genomic RNA; STD; VRL; 1936 BP.
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AC JX047213;
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DT 31-MAY-2013 (Rel. 116, Created)
DT 31-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Rice black streaked dwarf virus isolate SDJNi11 P8 gene, complete cds.
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KW .
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OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC Fijivirus group 2.
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RN [1]
RP 1-1936
RA Yin X., Li X.D.;
RT "Genetic diversity and population structure of Rice black-streaked dwarf
RT virus in China";
RL Unpublished.
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RN [2]
RP 1-1936
RA Yin X., Li X.D.;
RT ;
RL Submitted (10-MAY-2012) to the INSDC.
RL Department of Plant Pathology, Shandong Agricultural University, 61 Daizong
RL Street, Tai'an, Shandong 271018, China
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FH Key Location/Qualifiers
FH
FT source 1. .1936
FT /organism="Rice black streaked dwarf virus"
FT /segment="8"
FT /host="Zea mays"
FT /isolate="SDJNi11"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Aug-2008"
FT /db_xref="taxon:10990"
FT CDS 25. .1800
FT /codon_start=1
FT /product="P8"
FT /note="minor core protein"
FT /protein_id="AGE44060.1"
FT /translation="MTGTHDDRISLRLLFFNLWNKKRPNDPINHRKTKKKLKPQTANPT
FT SNPILVSPSITEYAEQISDEFAKARKPILVPTQIFSAFTRLETIFNRTGSYPDLFSNPI
FT KYLGFLIFMPDVSMHLDSPTVDHSYYNLKRNHKMSFDELQSNLTSRMLTGQIVKTETND
FT LAERFETYYFDPRCERTSIGFLKRTAIVRFEFLSYKYNNDLTLSEREKLPVWASHLIAR
FT MNVENVSLPLEISCSAINPTQHFAVIVLKNAKTNVTRGRFWTVLDDERDFLSVKTDIQA
FT IEFERNSVTTAGNLRHVLNNCLTLGEPFAFDPLDYSFKLSLLETGLSPLDDVVTIRLKD
FT LLRVFKEGQDVQIIGNKGVGKSEIGAMLAERYPHLLVVDSDDYGRFLVMLLNLVPSLFK
FT NYDFEINEELLTEEIYFQAMSDFIKAKQTEDVSLQTIFEYVMEGIILPNTIESGEANEE
FT VILDIFNRVFHSIQGSKFIGYRKFMIEYTRLMYTNFNKSQTCHFVHSYCELSFVPHSLA
FT YITLYSSYNSAVLNVVPRNGQVECSSSKMMANTLLHHFYERYTSNMNPTPVFLFSYFFG
FT LTKGLNVLKASSIIL"
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SQ Sequence 1936 BP; 607 A; 332 C; 332 G; 665 T; 0 other;
jx047213 Length: 1936 31-MAY-2013 Type: N Check: 6571 ..
1 aagttttttt cgcactgtct aaagatgact ggcacccatg acgaccggat
51 ttctttaaga cttttattct tcaacttatg gaacaaaaaa cgaccaaacg
101 acccaatcaa ccaccgaaaa acgaagaaaa agctaaaacc tcaaacagca
151 aatcctacat caaaccccat tttggtatcc ccttcaatta ctgagtatgc
201 tgaacaaata tcagacgaat ttgctaaggc tcgaaaaccg attttagtcc
251 cgactcaaat attttccgct ttcactagac ttgaaacgat tttcaacaga
301 acaggctctt accctgattt gtttagtaat ccaatcaaat acctcggatt
351 tttaatcttc atgcccgatg tttcaatgca tttagattct cctaccgttg
401 atcattcata ttataatttg aagagaaatc ataaaatgag ttttgatgaa
451 cttcaatcaa atttaacttc ccgaatgtta actggccaaa ttgtgaaaac
501 tgagactaat gatcttgcgg aacgttttga aacttattac tttgacccta
551 gatgtgaaag aacaagcatt ggatttttga aaagaaccgc gattgttaga
601 tttgaattct tatcttataa atacaacaat gatttaacac tgtcagaacg
651 tgaaaaatta cctgtttggg cttctcattt aatagctcgt atgaacgtgg
701 aaaatgtttc tttaccattg gaaattagtt gtagtgcaat caatcccacc
751 caacattttg ctgttatagt tcttaaaaat gctaaaacca atgtgacaag
801 aggcagattc tggaccgtgt tggacgatga acgtgacttt ttatctgtta
851 aaaccgatat tcaagcgatt gaatttgaac gtaattccgt aaccactgct
901 ggcaatttaa gacatgtttt aaacaattgt ttgacattag gcgaaccctt
951 cgccttcgac ccacttgact attcttttaa acttagctta cttgaaacag
1001 gactgtctcc attagatgac gttgtgacca ttagattgaa agatttgctg
1051 cgtgtgttca aagaaggaca ggatgttcaa attattggta ataaaggagt
1101 aggtaagtct gaaattggtg caatgttagc agaacgatat cctcatcttt
1151 tagttgttga tagtgatgat tatggtaggt ttttggtaat gttacttaat
1201 ttagttcctt cattgtttaa aaattatgat tttgaaatta acgaagaact
1251 tttaaccgaa gaaatttatt ttcaagctat gtctgatttt attaaagcca
1301 aacaaactga agatgtttcg cttcaaacga tttttgagta tgtaatggaa
1351 ggaataattc ttcccaatac cattgagagt ggagaagcta atgaggaagt
1401 tattttagac atttttaatc gtgtttttca cagcattcaa ggttctaaat
1451 ttattggata tcgtaagttc atgattgaat atacgcggct gatgtatact
1501 aattttaaca aaagtcaaac ttgtcatttc gttcactcgt attgtgaatt
1551 atcgttcgtt cctcattctt tggcttatat tactttatac agtagttaca
1601 actcagctgt gttaaatgtt gttcctagaa acggacaagt agaatgcagt
1651 tcttcaaaga tgatggccaa tacgctactt catcattttt acgaaagata
1701 tacttctaat atgaatccaa ccccagtatt tttgttttct tatttctttg
1751 gtttaaccaa aggtttaaac gttctaaaag cttcatctat tattttgtaa
1801 cattattatg tttgtgtgaa gaatatcatg tccttttagg gttcgactcg
1851 tataaaggtg tttcagtcca atatcttgat ggcagactag gtcgatgttt
1901 gattctagtg aagtgtgcga aaattcagct attgtc