Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate SDJNi11 P8 gene, complete cds.
ACC No: JX047213
Dated: 2013-05-31 | Length: 1936 | CRC: -1868189844
ID JX047213; SV 1; linear; genomic RNA; STD; VRL; 1936 BP. XX AC JX047213; XX DT 31-MAY-2013 (Rel. 116, Created) DT 31-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate SDJNi11 P8 gene, complete cds. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus; OC Fijivirus group 2. XX RN [1] RP 1-1936 RA Yin X., Li X.D.; RT "Genetic diversity and population structure of Rice black-streaked dwarf RT virus in China"; RL Unpublished. XX RN [2] RP 1-1936 RA Yin X., Li X.D.; RT ; RL Submitted (10-MAY-2012) to the INSDC. RL Department of Plant Pathology, Shandong Agricultural University, 61 Daizong RL Street, Tai'an, Shandong 271018, China XX FH Key Location/Qualifiers FH FT source 1. .1936 FT /organism="Rice black streaked dwarf virus" FT /segment="8" FT /host="Zea mays" FT /isolate="SDJNi11" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Aug-2008" FT /db_xref="taxon:10990" FT CDS 25. .1800 FT /codon_start=1 FT /product="P8" FT /note="minor core protein" FT /protein_id="AGE44060.1" FT /translation="MTGTHDDRISLRLLFFNLWNKKRPNDPINHRKTKKKLKPQTANPT FT SNPILVSPSITEYAEQISDEFAKARKPILVPTQIFSAFTRLETIFNRTGSYPDLFSNPI FT KYLGFLIFMPDVSMHLDSPTVDHSYYNLKRNHKMSFDELQSNLTSRMLTGQIVKTETND FT LAERFETYYFDPRCERTSIGFLKRTAIVRFEFLSYKYNNDLTLSEREKLPVWASHLIAR FT MNVENVSLPLEISCSAINPTQHFAVIVLKNAKTNVTRGRFWTVLDDERDFLSVKTDIQA FT IEFERNSVTTAGNLRHVLNNCLTLGEPFAFDPLDYSFKLSLLETGLSPLDDVVTIRLKD FT LLRVFKEGQDVQIIGNKGVGKSEIGAMLAERYPHLLVVDSDDYGRFLVMLLNLVPSLFK FT NYDFEINEELLTEEIYFQAMSDFIKAKQTEDVSLQTIFEYVMEGIILPNTIESGEANEE FT VILDIFNRVFHSIQGSKFIGYRKFMIEYTRLMYTNFNKSQTCHFVHSYCELSFVPHSLA FT YITLYSSYNSAVLNVVPRNGQVECSSSKMMANTLLHHFYERYTSNMNPTPVFLFSYFFG FT LTKGLNVLKASSIIL" XX SQ Sequence 1936 BP; 607 A; 332 C; 332 G; 665 T; 0 other; jx047213 Length: 1936 31-MAY-2013 Type: N Check: 6571 .. 1 aagttttttt cgcactgtct aaagatgact ggcacccatg acgaccggat 51 ttctttaaga cttttattct tcaacttatg gaacaaaaaa cgaccaaacg 101 acccaatcaa ccaccgaaaa acgaagaaaa agctaaaacc tcaaacagca 151 aatcctacat caaaccccat tttggtatcc ccttcaatta ctgagtatgc 201 tgaacaaata tcagacgaat ttgctaaggc tcgaaaaccg attttagtcc 251 cgactcaaat attttccgct ttcactagac ttgaaacgat tttcaacaga 301 acaggctctt accctgattt gtttagtaat ccaatcaaat acctcggatt 351 tttaatcttc atgcccgatg tttcaatgca tttagattct cctaccgttg 401 atcattcata ttataatttg aagagaaatc ataaaatgag ttttgatgaa 451 cttcaatcaa atttaacttc ccgaatgtta actggccaaa ttgtgaaaac 501 tgagactaat gatcttgcgg aacgttttga aacttattac tttgacccta 551 gatgtgaaag aacaagcatt ggatttttga aaagaaccgc gattgttaga 601 tttgaattct tatcttataa atacaacaat gatttaacac tgtcagaacg 651 tgaaaaatta cctgtttggg cttctcattt aatagctcgt atgaacgtgg 701 aaaatgtttc tttaccattg gaaattagtt gtagtgcaat caatcccacc 751 caacattttg ctgttatagt tcttaaaaat gctaaaacca atgtgacaag 801 aggcagattc tggaccgtgt tggacgatga acgtgacttt ttatctgtta 851 aaaccgatat tcaagcgatt gaatttgaac gtaattccgt aaccactgct 901 ggcaatttaa gacatgtttt aaacaattgt ttgacattag gcgaaccctt 951 cgccttcgac ccacttgact attcttttaa acttagctta cttgaaacag 1001 gactgtctcc attagatgac gttgtgacca ttagattgaa agatttgctg 1051 cgtgtgttca aagaaggaca ggatgttcaa attattggta ataaaggagt 1101 aggtaagtct gaaattggtg caatgttagc agaacgatat cctcatcttt 1151 tagttgttga tagtgatgat tatggtaggt ttttggtaat gttacttaat 1201 ttagttcctt cattgtttaa aaattatgat tttgaaatta acgaagaact 1251 tttaaccgaa gaaatttatt ttcaagctat gtctgatttt attaaagcca 1301 aacaaactga agatgtttcg cttcaaacga tttttgagta tgtaatggaa 1351 ggaataattc ttcccaatac cattgagagt ggagaagcta atgaggaagt 1401 tattttagac atttttaatc gtgtttttca cagcattcaa ggttctaaat 1451 ttattggata tcgtaagttc atgattgaat atacgcggct gatgtatact 1501 aattttaaca aaagtcaaac ttgtcatttc gttcactcgt attgtgaatt 1551 atcgttcgtt cctcattctt tggcttatat tactttatac agtagttaca 1601 actcagctgt gttaaatgtt gttcctagaa acggacaagt agaatgcagt 1651 tcttcaaaga tgatggccaa tacgctactt catcattttt acgaaagata 1701 tacttctaat atgaatccaa ccccagtatt tttgttttct tatttctttg 1751 gtttaaccaa aggtttaaac gttctaaaag cttcatctat tattttgtaa 1801 cattattatg tttgtgtgaa gaatatcatg tccttttagg gttcgactcg 1851 tataaaggtg tttcagtcca atatcttgat ggcagactag gtcgatgttt 1901 gattctagtg aagtgtgcga aaattcagct attgtc