Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus isolate SDLC8 P8 gene, complete cds.

ACC No: JX047233

Dated: 2013-05-31 | Length: 1936 | CRC: 736222570

                
ID   JX047233; SV 1; linear; genomic RNA; STD; VRL; 1936 BP.
XX
AC   JX047233;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate SDLC8 P8 gene, complete cds.
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KW   .
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OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   Fijivirus group 2.
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RN   [1]
RP   1-1936
RA   Yin X., Li X.D.;
RT   "Genetic diversity and population structure of Rice black-streaked dwarf
RT   virus in China";
RL   Unpublished.
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RN   [2]
RP   1-1936
RA   Yin X., Li X.D.;
RT   ;
RL   Submitted (10-MAY-2012) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, 61 Daizong
RL   Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1936
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="8"
FT                   /host="Zea mays"
FT                   /isolate="SDLC8"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:10990"
FT   CDS             25. .1800
FT                   /codon_start=1
FT                   /product="P8"
FT                   /note="minor core protein"
FT                   /protein_id="AGE44080.1"
FT                   /translation="MTGTHDDRISLRLLFFNLWNKKRPNDPINHRKTKKKLKPQTANPT
FT                   SNPILISPSITEYAEQISDEFAKARKPILVPTQIFSAFTRLETIFNRTGSYPDLFSNPI
FT                   KYLGFLIFMPDVSMHLDSPTVDHSYYNLKRNHKMSFDELQSNLTSRMLTGQIVKTETND
FT                   LAERFETYYFDPRCERTSIGFLKRTAIVRFEFLSYKYNNDLTLSEREKLPVWASHLIAR
FT                   MNVENVSLPLEISCSAINPTQHFAVIVLKNAKTNVTRGRFWTVLDDERGFLSVKTDIQA
FT                   IEFERNSVTTAGNLRHVLNNCLTLGEPFAFDPLDYSFKLNLLETGLSPLDDVVTIRLKD
FT                   LLRVFKEGQDVQIIGNKGVGKSEIGAMLAERYPHLLVVDSDDYGRFLVMLLNLVPSLFK
FT                   NFDFEINEELLTEEIYFQAMSDFIKAKQTEGVSLQTIFEYVMEGILLPNTIESGEANEE
FT                   VILDIFNRVFHSIQGSKFIGYRKFMIEYTRLMYTNFNKSQTCHFVHSYCELSFVPHSLA
FT                   YITLYSSYNSAVLNVVPRNGQVECSSSKMMANTLLHHFYERYTSNMNPTPVFLFSYFFG
FT                   LTKGLNVLKASSIIV"
XX
SQ   Sequence 1936 BP; 602 A; 335 C; 334 G; 665 T; 0 other;

jx047233 Length: 1936  31-MAY-2013  Type: N  Check: 6948  ..

       1  aagttttttt cgcactgtct aaagatgact ggcacccatg acgaccggat
      51  ttctttaaga cttttattct tcaacttatg gaacaaaaaa cgaccaaacg
     101  acccaattaa ccaccgaaaa acgaagaaaa agctaaaacc tcaaacagca
     151  aatcctacat caaaccccat tttgatatcc ccttcaatta ctgagtatgc
     201  tgaacagata tcagacgaat ttgctaaggc tcgaaaaccg attttagtcc
     251  cgactcaaat attttccgct ttcactagac ttgaaacgat tttcaacaga
     301  acaggctctt accctgattt gttcagtaat ccaatcaaat acctcggatt
     351  tttaatcttc atgcccgatg tttcaatgca tttagattct cccactgttg
     401  atcattcata ttataacttg aagagaaatc ataaaatgag ctttgatgaa
     451  cttcaatcaa atttaacttc ccgaatgtta actggccaaa ttgtgaagac
     501  tgagactaat gatcttgcgg aacgttttga aacttattac tttgacccta
     551  gatgtgaaag aacaagcatt ggatttttga aaagaaccgc gattgtaaga
     601  tttgaattct tatcttataa atacaacaat gatttaacac tgtcggaacg
     651  tgaaaaatta cctgtttggg cttctcattt aatagctcgt atgaacgttg
     701  aaaatgtttc tttaccattg gaaattagtt gtagtgcaat caatcccacc
     751  caacattttg ctgttatagt tcttaaaaat gctaaaacca atgtgacaag
     801  aggcagattc tggaccgtgt tggacgatga acgtggcttt ttatctgtta
     851  aaaccgatat tcaagcgatt gaatttgaac gtaattctgt aactactgct
     901  ggcaatttaa gacatgtttt aaacaattgt ttaacattgg gcgaaccctt
     951  cgccttcgac ccacttgatt attcttttaa acttaactta cttgaaacag
    1001  ggttatctcc attagatgac gttgtgacca ttagattgaa agatctgttg
    1051  cgtgtgttca aagaaggaca ggatgttcaa attattggta ataaaggagt
    1101  aggtaagtct gaaattggcg caatgttagc agaacgatat ccccatcttt
    1151  tagttgttga tagtgatgat tatggcaggt ttttggtaat gttgcttaat
    1201  ttagttcctt cattgtttaa aaattttgat tttgaaatta acgaagaact
    1251  tttaacagaa gaaatttatt ttcaagctat gtctgatttt attaaagcta
    1301  aacaaactga aggtgtttca cttcaaacga tttttgagta tgtgatggaa
    1351  ggaatccttc ttccaaacac tattgagagt ggagaagcta atgaggaagt
    1401  cattttagac atttttaatc gtgtttttca tagcatccaa ggttctaaat
    1451  ttattggata tcgtaagttc atgattgaat atacgcgtct gatgtacact
    1501  aattttaaca agagtcaaac ttgtcatttc gttcactctt attgtgaatt
    1551  atcgttcgtt cctcattctt tggcttatat tactttatac agtagttaca
    1601  actcagctgt gttaaatgtt gttcctagaa acggacaagt agaatgcagt
    1651  tcctcaaaga tgatggccaa tacgctactt catcattttt acgaaagata
    1701  tacctctaat atgaatccaa ccccagtatt tttgttttct tatttctttg
    1751  gtttaaccaa aggtttaaat gttctaaaag cttcatctat tattgtgtaa
    1801  cattactatg tttttgtgaa gaatatcatg tccttttagg gttcgattcg
    1851  tataaaggtg tttcagtcca atatcttgat ggcagactag gtcgatgttt
    1901  gattctagtg aagtgtgcga aaattcagct attgtc