Sequence of DPV Chickpea chlorotic dwarf virus

Chickpea chlorotic dwarf virus isolate D39, complete genome.

ACC No: JX183063

Dated: 2012-07-29 | Length: 2584 | CRC: 580725317

                
ID   JX183063; SV 1; circular; genomic DNA; STD; VRL; 2584 BP.
XX
AC   JX183063;
XX
DT   29-JUL-2012 (Rel. 113, Created)
DT   29-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Chickpea chlorotic dwarf virus isolate D39, complete genome.
XX
KW   .
XX
OS   Chickpea chlorotic dwarf virus
OC   Viruses; ssDNA viruses; Geminiviridae; Mastrevirus;
OC   unclassified Mastrevirus.
XX
RN   [1]
RP   1-2584
RA   Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.;
RT   "Characterization of mastrevirus causing Chickpea chlorotic stunt disease
RT   in India";
RL   Unpublished.
XX
RN   [2]
RP   1-2584
RA   Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.;
RT   ;
RL   Submitted (14-JUN-2012) to the INSDC.
RL   Division of Plant Pathology, Indian Agricultural Research Institute, Pusa,
RL   New Delhi, Delhi 110012, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2584
FT                   /organism="Chickpea chlorotic dwarf virus"
FT                   /host="Cicer arietinum"
FT                   /isolate="D39"
FT                   /mol_type="genomic DNA"
FT                   /country="India:New Delhi"
FT                   /isolation_source="leaf"
FT                   /collected_by="VG Malathi"
FT                   /collection_date="Jan-2011"
FT                   /identified_by="Surapathrudu K"
FT                   /note="genotype: Pusa 362"
FT                   /db_xref="taxon:463360"
FT   CDS             132. .410
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF V2"
FT                   /protein_id="AFO38339.1"
FT                   /translation="MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL
FT                   VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP"
FT   CDS             423. .1160
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF V1"
FT                   /protein_id="AFO38340.1"
FT                   /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS
FT                   WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK
FT                   CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANLWTWTVSRAACHRFVVKKTWSVVVES
FT                   NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA
FT                   PSQKSDVYVNGYFRVYFKSVGNQ"
FT   gene            complement(1318. .2408)
FT                   /gene="C1:C2"
FT   CDS             complement(join(1318. .1732,1819. .2408))
FT                   /codon_start=1
FT                   /gene="C1:C2"
FT                   /product="replication associated protein"
FT                   /protein_id="AFO38341.1"
FT                   /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL
FT                   GVATELHQDGTTHYHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD
FT                   IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK
FT                   LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTW
FT                   ARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKK
FT                   KIKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH"
FT   CDS             complement(1318. .1752)
FT                   /codon_start=1
FT                   /gene="C1:C2"
FT                   /product="Rep B"
FT                   /note="ORF C2"
FT                   /protein_id="AFO38343.1"
FT                   /translation="MDGRSNQEPRRTGARVPSLYICGPTRTGKTTWARSLGRHNYWNGT
FT                   IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN
FT                   RDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH"
FT   CDS             complement(1530. .2408)
FT                   /codon_start=1
FT                   /gene="C1:C2"
FT                   /product="Rep A"
FT                   /note="ORF C1"
FT                   /protein_id="AFO38342.1"
FT                   /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL
FT                   GVATELHQDGTTHYHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD
FT                   IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK
FT                   LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSDLEWMA
FT                   DLTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTRPTMSLTT
FT                   SPSSSSHCGSN"
XX
SQ   Sequence 2584 BP; 662 A; 517 C; 652 G; 753 T; 0 other;

jx183063 Length: 2584  29-JUL-2012  Type: N  Check: 6255  ..

       1  accggcgtgg cccaccttat cgcgagcact ttagtgcgag cggttcagat
      51  ttaaagtgga aaagttcccg cccactaggg tttgctttac cttttgcttt
     101  ataaaaggcg cactaatggg tagaccgtag aatggaacgt attctgtatc
     151  aggtatttcc tacggatacg aattattcgt acgatcctcc tcctgtgaat
     201  acgaattccc agggatcctc tcaaacggat ttcgggaagg tggttatcgc
     251  cttggtggtt attctggtta gtgttggtgt gttctatctg gcttatagtc
     301  tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc
     351  accactgaaa tcgggtttgg tcaaaccccg gctcgaaacc aggatcatcc
     401  tcaaccttag gcggggtgca tcatgtcaac tgttacgtgg ggaaacaaga
     451  ggaagcgcag cgataggtcc tcgaaggcga agagtaagtc ctctgggtct
     501  tatgtgccga gatctgtgtc ctccaggagg gaatcgttgc aggtggctac
     551  cttttcctgg accagttctg gttcgggtat caagttctct actggtggtg
     601  ctgcctacct tgtgagtaat tttccacagg gtgccaacga taactgtcgt
     651  cacaccaaca agaccgtgct atacaaattc atggccaaga atacggtgta
     701  cttggaccct agtcattatc ctaaggtctt taagtgcccg ttcacttttt
     751  ggctggtgta cgacaaggct cctggtgcaa gtgtccctag tactggggac
     801  atatttgaag gcccttctct attccctgct aatctctgga cgtggactgt
     851  gtctagggct gcctgccatc gttttgttgt caaaaaaacg tggtcagtgg
     901  tggtggagag caatggtgtt gatccaggaa aggcccaatc cagttcctat
     951  tatgggcctg gaccttgtaa tcagattaag tcctgcaata agttctttaa
    1001  gaggctgggt gtgtcaacgg agtggaaaaa tagttccacg ggggatgttg
    1051  gtgatataaa ggaaggagcc ctttacattg taggtgctcc ttcccagaag
    1101  tctgatgtat atgtaaatgg ttatttccga gtgtacttca agtccgttgg
    1151  caatcaataa aaatgtatta ttatgaatat tttacattgt gcaagtaggt
    1201  agaaattcaa tatgttacat tacacacgaa ataagcaaaa aaacacacct
    1251  aaaacaaaag tacactaccc acgataactt ataactttag cttaaccccg
    1301  tatgaggaga ggcacgttca gtgactcgac gattcccggg caaaaaaagt
    1351  ttcgccgtca tccatataat ggatctcaca attgtctgta aagtattctt
    1401  tctgatgctc agacatagca ggaatccagt cctcatctct atttgttaaa
    1451  attatggaag ggacaccacc ttttattttc ttcttttttc catacttagg
    1501  gttgacagtg aagtcgaact ggcaacctat taattgcttc cacaatggga
    1551  cgaacttgaa ggggatgtcg tcaatgacat tgtaggtcgc gtgttcgtcg
    1601  tacgtggtga agtcgatggt cccattccag tagttgtgtc gtccgaggct
    1651  tctagcccag gtggtctttc cggtacgagt tggtccgcag atgtagaggc
    1701  tggggactct agctccagtc cttctcggtt cctggttaga tcggccatcc
    1751  attcaaggtc agattgagct tgctgatatg aaactggatg gacaagagtg
    1801  taggcgtcga tgcttacttg gtacaggtgt gtatccctcc attgtgcgag
    1851  atcctcgtgg cagcggagat ctgactcagt gaacggcgac acatatgctt
    1901  caggttgtgg agggaatagc ttgtttgcgg agtattcaag ccattgaagc
    1951  ttggtagccc attcatgtgg gaattcctcc ttgatcatgt caagatattc
    2001  ctccttagac gttgcagtct ggataatagt tcgccatcgt gcgtcagatt
    2051  tgcgaggaga gactttatga tctctgaaat ctcctcttgt tttaatatct
    2101  ccgtccttgg aaatgtattc aaggacttgt ttagagtttc tagctggctg
    2151  gatattaggg tgatttcctt caaaatcgaa aaaagaagga tccctaatcc
    2201  aaggtttttt atcaagctgg ataagagcat gatagtgggt agtgccatct
    2251  tgatgaagct cagtagcaac accaaggaag aaaataagaa aaggtgtgag
    2301  tttctcccag agaaactcga ataaatcatc tctttgagat gagcatttag
    2351  ggtaggtaag gaaaacatat tttgattgga atctgaagtt cttgtttgca
    2401  gaaggcatgt tttgttgtga ctccaagggt tggcttgaaa ctctatctta
    2451  taaccggcgt ggagacttgg agacaagggt agtttggtca tttaggctgg
    2501  gtagtggaat aatgacatgg cagtgactta aagacgaagt ctttgcgaaa
    2551  gcgaataagg tggagccacg ccgaaattaa tatt