Sequence of DPV Chickpea chlorotic dwarf virus
Chickpea chlorotic dwarf virus isolate D39, complete genome.
ACC No: JX183063
Dated: 2012-07-29 | Length: 2584 | CRC: 580725317
ID JX183063; SV 1; circular; genomic DNA; STD; VRL; 2584 BP. XX AC JX183063; XX DT 29-JUL-2012 (Rel. 113, Created) DT 29-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Chickpea chlorotic dwarf virus isolate D39, complete genome. XX KW . XX OS Chickpea chlorotic dwarf virus OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus; OC unclassified Mastrevirus. XX RN [1] RP 1-2584 RA Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.; RT "Characterization of mastrevirus causing Chickpea chlorotic stunt disease RT in India"; RL Unpublished. XX RN [2] RP 1-2584 RA Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.; RT ; RL Submitted (14-JUN-2012) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa, RL New Delhi, Delhi 110012, India XX FH Key Location/Qualifiers FH FT source 1. .2584 FT /organism="Chickpea chlorotic dwarf virus" FT /host="Cicer arietinum" FT /isolate="D39" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /isolation_source="leaf" FT /collected_by="VG Malathi" FT /collection_date="Jan-2011" FT /identified_by="Surapathrudu K" FT /note="genotype: Pusa 362" FT /db_xref="taxon:463360" FT CDS 132. .410 FT /codon_start=1 FT /product="movement protein" FT /note="ORF V2" FT /protein_id="AFO38339.1" FT /translation="MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIGFGQTPARNQDHPQP" FT CDS 423. .1160 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF V1" FT /protein_id="AFO38340.1" FT /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS FT WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK FT CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANLWTWTVSRAACHRFVVKKTWSVVVES FT NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA FT PSQKSDVYVNGYFRVYFKSVGNQ" FT gene complement(1318. .2408) FT /gene="C1:C2" FT CDS complement(join(1318. .1732,1819. .2408)) FT /codon_start=1 FT /gene="C1:C2" FT /product="replication associated protein" FT /protein_id="AFO38341.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GVATELHQDGTTHYHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTW FT ARSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKK FT KIKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH" FT CDS complement(1318. .1752) FT /codon_start=1 FT /gene="C1:C2" FT /product="Rep B" FT /note="ORF C2" FT /protein_id="AFO38343.1" FT /translation="MDGRSNQEPRRTGARVPSLYICGPTRTGKTTWARSLGRHNYWNGT FT IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN FT RDEDWIPAMSEHQKEYFTDNCEIHYMDDGETFFARESSSH" FT CDS complement(1530. .2408) FT /codon_start=1 FT /gene="C1:C2" FT /product="Rep A" FT /note="ORF C1" FT /protein_id="AFO38342.1" FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL FT GVATELHQDGTTHYHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIKEEFPHEWATKLQWLEYSANK FT LFPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSDLEWMA FT DLTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTRPTMSLTT FT SPSSSSHCGSN" XX SQ Sequence 2584 BP; 662 A; 517 C; 652 G; 753 T; 0 other; jx183063 Length: 2584 29-JUL-2012 Type: N Check: 6255 .. 1 accggcgtgg cccaccttat cgcgagcact ttagtgcgag cggttcagat 51 ttaaagtgga aaagttcccg cccactaggg tttgctttac cttttgcttt 101 ataaaaggcg cactaatggg tagaccgtag aatggaacgt attctgtatc 151 aggtatttcc tacggatacg aattattcgt acgatcctcc tcctgtgaat 201 acgaattccc agggatcctc tcaaacggat ttcgggaagg tggttatcgc 251 cttggtggtt attctggtta gtgttggtgt gttctatctg gcttatagtc 301 tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc 351 accactgaaa tcgggtttgg tcaaaccccg gctcgaaacc aggatcatcc 401 tcaaccttag gcggggtgca tcatgtcaac tgttacgtgg ggaaacaaga 451 ggaagcgcag cgataggtcc tcgaaggcga agagtaagtc ctctgggtct 501 tatgtgccga gatctgtgtc ctccaggagg gaatcgttgc aggtggctac 551 cttttcctgg accagttctg gttcgggtat caagttctct actggtggtg 601 ctgcctacct tgtgagtaat tttccacagg gtgccaacga taactgtcgt 651 cacaccaaca agaccgtgct atacaaattc atggccaaga atacggtgta 701 cttggaccct agtcattatc ctaaggtctt taagtgcccg ttcacttttt 751 ggctggtgta cgacaaggct cctggtgcaa gtgtccctag tactggggac 801 atatttgaag gcccttctct attccctgct aatctctgga cgtggactgt 851 gtctagggct gcctgccatc gttttgttgt caaaaaaacg tggtcagtgg 901 tggtggagag caatggtgtt gatccaggaa aggcccaatc cagttcctat 951 tatgggcctg gaccttgtaa tcagattaag tcctgcaata agttctttaa 1001 gaggctgggt gtgtcaacgg agtggaaaaa tagttccacg ggggatgttg 1051 gtgatataaa ggaaggagcc ctttacattg taggtgctcc ttcccagaag 1101 tctgatgtat atgtaaatgg ttatttccga gtgtacttca agtccgttgg 1151 caatcaataa aaatgtatta ttatgaatat tttacattgt gcaagtaggt 1201 agaaattcaa tatgttacat tacacacgaa ataagcaaaa aaacacacct 1251 aaaacaaaag tacactaccc acgataactt ataactttag cttaaccccg 1301 tatgaggaga ggcacgttca gtgactcgac gattcccggg caaaaaaagt 1351 ttcgccgtca tccatataat ggatctcaca attgtctgta aagtattctt 1401 tctgatgctc agacatagca ggaatccagt cctcatctct atttgttaaa 1451 attatggaag ggacaccacc ttttattttc ttcttttttc catacttagg 1501 gttgacagtg aagtcgaact ggcaacctat taattgcttc cacaatggga 1551 cgaacttgaa ggggatgtcg tcaatgacat tgtaggtcgc gtgttcgtcg 1601 tacgtggtga agtcgatggt cccattccag tagttgtgtc gtccgaggct 1651 tctagcccag gtggtctttc cggtacgagt tggtccgcag atgtagaggc 1701 tggggactct agctccagtc cttctcggtt cctggttaga tcggccatcc 1751 attcaaggtc agattgagct tgctgatatg aaactggatg gacaagagtg 1801 taggcgtcga tgcttacttg gtacaggtgt gtatccctcc attgtgcgag 1851 atcctcgtgg cagcggagat ctgactcagt gaacggcgac acatatgctt 1901 caggttgtgg agggaatagc ttgtttgcgg agtattcaag ccattgaagc 1951 ttggtagccc attcatgtgg gaattcctcc ttgatcatgt caagatattc 2001 ctccttagac gttgcagtct ggataatagt tcgccatcgt gcgtcagatt 2051 tgcgaggaga gactttatga tctctgaaat ctcctcttgt tttaatatct 2101 ccgtccttgg aaatgtattc aaggacttgt ttagagtttc tagctggctg 2151 gatattaggg tgatttcctt caaaatcgaa aaaagaagga tccctaatcc 2201 aaggtttttt atcaagctgg ataagagcat gatagtgggt agtgccatct 2251 tgatgaagct cagtagcaac accaaggaag aaaataagaa aaggtgtgag 2301 tttctcccag agaaactcga ataaatcatc tctttgagat gagcatttag 2351 ggtaggtaag gaaaacatat tttgattgga atctgaagtt cttgtttgca 2401 gaaggcatgt tttgttgtga ctccaagggt tggcttgaaa ctctatctta 2451 taaccggcgt ggagacttgg agacaagggt agtttggtca tttaggctgg 2501 gtagtggaat aatgacatgg cagtgactta aagacgaagt ctttgcgaaa 2551 gcgaataagg tggagccacg ccgaaattaa tatt