Sequence of DPV Cotton leaf curl Multan virus

Cotton leaf curl Multan virus isolate Okra08 segment DNA-A, complete sequence.

ACC No: JX286664

Dated: 2012-09-27 | Length: 2737 | CRC: -1276715093

                
ID   JX286664; SV 1; circular; genomic DNA; STD; VRL; 2737 BP.
XX
AC   JX286664;
XX
DT   27-SEP-2012 (Rel. 114, Created)
DT   27-SEP-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Cotton leaf curl Multan virus isolate Okra08 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Cotton leaf curl Multan virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2737
RA   Tang Y.F., He Z.F.;
RT   "Molecular characterization of Cotton leaf curl Multan virus in Guangdong,
RT   China";
RL   Unpublished.
XX
RN   [2]
RP   1-2737
RA   Tang Y.F., He Z.F.;
RT   ;
RL   Submitted (06-JUL-2012) to the INSDC.
RL   Plant Protection Research Institute, Guangdong Academy of Agricultural
RL   Sciences, Jinying Rd No. 7, Tianhe District, Guangzhou, Guangdong 510640,
RL   China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2737
FT                   /organism="Cotton leaf curl Multan virus"
FT                   /segment="DNA-A"
FT                   /host="Abelmoschus esculentus (okra)"
FT                   /isolate="Okra08"
FT                   /mol_type="genomic DNA"
FT                   /country="China"
FT                   /collected_by="Z.F. He"
FT                   /collection_date="13-Oct-2011"
FT                   /db_xref="taxon:223252"
FT   gene            116. .481
FT                   /gene="AV2"
FT   CDS             116. .481
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="AV2 protein"
FT                   /protein_id="AFS44555.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL
FT                   ICILRSRNYVEASCRYRHFNARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   EAQNISDVQKSGCSKGL"
FT   gene            276. .1046
FT                   /gene="AV1"
FT   CDS             276. .1046
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /protein_id="AFS44554.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAVPIVRVTKQQAWT
FT                   NRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   IGKRFCVKSVYVLGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   gene            complement(1049. .1453)
FT                   /gene="AC3"
FT   CDS             complement(1049. .1453)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="AC3 protein"
FT                   /protein_id="AFS44558.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI
FT                   LTIRLQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY"
FT   gene            complement(1146. .1598)
FT                   /gene="AC2"
FT   CDS             complement(1146. .1598)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="AC2 protein"
FT                   /protein_id="AFS44557.1"
FT                   /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPTPVQLQH
FT                   SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN"
FT   gene            complement(1495. .2586)
FT                   /gene="AC1"
FT   CDS             complement(1495. .2586)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="Rep protein"
FT                   /protein_id="AFS44556.1"
FT                   /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK
FT                   VCRELHEDGSPHLHVLIQFEGKLICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI
FT                   DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT                   NLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD
FT                   SRTGKTMWARSLGPHSYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT                   YSASNQSTAQGSEETQQEEESRS"
FT   gene            complement(2127. .2429)
FT                   /gene="AC4"
FT   CDS             complement(2127. .2429)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="AFS44559.1"
FT                   /translation="MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQA
FT                   QMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN"
XX
SQ   Sequence 2737 BP; 705 A; 547 C; 645 G; 840 T; 0 other;

jx286664 Length: 2737  27-SEP-2012  Type: N  Check: 1516  ..

       1  accggatggc cgcgcgattt ttttgtgggc cccctattta tgagattgct
      51  ccctcaaagc taaataacgc tcccgcccac tataagtact tgcgcactaa
     101  gtttcaaatt caaacatgtg ggatccattg ttaaacgaat ttcctgatac
     151  ggtgcacggg tttcggtgta tgctttctgt caaatatttg caacttttgt
     201  cgcaggatta ttcaccggat accctaggtt acgatttaat acgggattta
     251  atctgtattc tacgttcccg taattatgtc gaagcgagct gcagatatcg
     301  tcatttcaac gcccgcgtcg aaagtacgtc ggcgtctgaa cttcggcagc
     351  ccatacacca accgtgttgc tgtccccatt gtccgcgtca caaaacaaca
     401  ggcatggaca aacaggccta tgaacaggaa gcccagaata tatcggatgt
     451  acagaagtcc ggatgttcca aagggttgtg aaggcccatg taaggtacag
     501  tcttttgagt ccagacatga tgttgttcat attggtaagg taatgtgtat
     551  ttctgatgtt actcgtggtg tcggtttgac ccatcgtatt ggtaaacgtt
     601  tttgtgtcaa gtcagtttat gttttaggta agatatggat ggatgaaaat
     651  ataaagacca ggaatcacac gaattcggtc atgttctttt tagttcgcga
     701  tcgacgacct gttgacaaac ctcaggattt tggtgaggta ttcaatatgt
     751  ttgataacga acccagtaca gcaactgtga agaatagtca tagggaccgt
     801  tatcaggtgt tgaggaaatg gcatgcaacc gttacgggcg gtcaatatgc
     851  gagtaaggaa caggctttgg tcaagaagtt tgtcagagtt aacaattatg
     901  ttgtttacaa tcaacaggag gcaggaaaat acgagaatca tacggaaaat
     951  gcgttaatgc tttatatggc ttgtacccac gctagcaacc ctgtttatgc
    1001  tacgttgaag attaggatat atttttatga ctctgtaacg aattgatgtt
    1051  aataaagttt gaattctatt tctgaatatt gatctacata catagtttgt
    1101  tggattacat tgtacaatac atgttctaca gctttaataa ctaaattaat
    1151  tgaaattaca ccgagattgt tcagatattt gaggacttgg gttttgaata
    1201  cccttaagaa aagaccagtc tgagggtgta aggtcgtcca gattcggaag
    1251  gttagaaaac acttgtgcag tcccagagct ttccgagtgt tgtagttgaa
    1301  ctggagtcgg atcgtgagta tgtccatatt cgtcgtgaat ggacggttga
    1351  agtggctgat tatcttgaaa taaaggggat ttggaacctc ccagatatat
    1401  gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg tgcgtgaatc
    1451  catggttgtg gcagttgatt gacagataat aagaacaccc gcattcaaga
    1501  tctactctcc tcctcctgtt gcgtctcttc gcttccctgt gctgtacttt
    1551  gattggaagc tgagtacagt ggtccttcga gagtgatgaa gatcgcattt
    1601  tttagggccc aattctttaa tgctgtgttt ttttcctcgt tgaggaattc
    1651  cttataactg ctgttgggac caggattgca caagaagatt gtcggtattc
    1701  cgcctttaat ttgaactggc ttaccgtatt ttgtgttgga ctgccagtct
    1751  ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat gcgggtcgac
    1801  gtcatcaatg acgttgtacc aggcgtcgtt actgtatact ttgggactca
    1851  ggtccagatg tccgcacaaa tagctatgtg gtcccaatga cctagcccac
    1901  atcgtctttc ccgtacgact atctccctca attactatac tccgaggtct
    1951  aaggggccgc gcagcggcat cgacaacgtt atccaacgcc caaacttgaa
    2001  gttcttctgg aacttgatcg aacgaagaaa aagaaaaagg agaaacataa
    2051  ggagctggtg gctcctgaaa gatcctgtct agatttgcat ttaaattatg
    2101  aaattgtagt acaaaatctt taggagctag ttccttaatg actctaagag
    2151  cctctgactt acttcccgcg ttaagcgctg cggcgtaagc gtcgttggct
    2201  gtctgttgtc ctcctcttgc tgatcttcca tcgatctgaa actctcccca
    2251  ctcgagagtg tccccgtcct tgtcgatgta gtccttgaca tctgagcttg
    2301  atttagctcc ctgaatgttc ggatggaaat gtgctgacct ggttggggat
    2351  accaggtcga agaatctgtt attcgtgcag atgagtttgc cctcgaactg
    2401  gatgagcaca tggagatgag ggctcccatc ttcgtgtaac tctctgcaga
    2451  ctttgatgta ttttttattc gagggtgtgt tgatggcttg aatttgggaa
    2501  agtgcttcct ctttagtgag tgagcactgt ggataagtga ggaaataatt
    2551  tttggcttgt attttaaaac gtttgggggg agccattgac tttggtcaat
    2601  tggagacaac tgattggatt ttactctggc aattggagac tggagacaat
    2651  ttatagtgtc tccaaatggc attatcgtaa tttgagaaat catttcaaaa
    2701  tcctcacgct ccaaaaagcg gccatccgta taatatt