Sequence of DPV Leishmania RNA virus 1-1
Leishmania RNA virus 1 - LgM5313 capsid protein gene, complete cds.
ACC No: JX313126
Dated: 2013-02-03 | Length: 2480 | CRC: -335945822
ID JX313126; SV 1; linear; genomic RNA; STD; VRL; 2480 BP. XX AC JX313126; XX DT 03-FEB-2013 (Rel. 115, Created) DT 03-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Leishmania RNA virus 1 - LgM5313 capsid protein gene, complete cds. XX KW . XX OS Leishmania RNA virus 1 - LgM5313 OC Viruses; dsRNA viruses; Totiviridae; Leishmaniavirus; OC unclassified Leishmaniavirus. XX RN [1] RC Publication Status: Online-Only RP 1-2480 RX PUBMED; 23326619. RA Zangger H., Ronet C., Desponds C., Kuhlmann F.M., Robinson J., RA Hartley M.A., Prevel F., Castiglioni P., Pratlong F., Bastien P., RA Muller N., Parmentier L., Saravia N.G., Beverley S.M., Fasel N.; RT "Detection of leishmania RNA virus in leishmania parasites"; RL PLoS Negl Trop Dis 7(1):E2006-E2006(2013). XX RN [2] RP 1-2480 RA Zangger H., Desponds C., Fasel N.; RT ; RL Submitted (16-JUL-2012) to the INSDC. RL Biochemistry, University of Lausanne, Boveresses 155, Epalinges, VD 1066, RL Switzerland XX FH Key Location/Qualifiers FH FT source 1. .2480 FT /organism="Leishmania RNA virus 1 - LgM5313" FT /host="Leishmania guyanensis M5313 (WHI/BR/78/M5313)" FT /mol_type="genomic RNA" FT /country="Brazil" FT /collection_date="1978" FT /db_xref="taxon:1285422" FT CDS 165. .2393 FT /codon_start=1 FT /product="capsid protein" FT /protein_id="AGD88192.1" FT /translation="MADIPNSDKIACGRKPMFCEIIKLANRKRLIFNTTDERVYDARLN FT YCSTADSTVQADCHIYWRLKLRRTDAVFEEYTGQGYSLDTAAYPQQYTDIIRGYYSKHV FT SSSLAANTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKHKNKEVVTLSNADSLS FT FLPHSALYLPSPLRASDPEIFNMLYLLGCACDASIAMDNISNTSGAAKYSMPHYNPLQL FT SHALHVTIFYMLSLMDSCGYGDDAVLALTSGLHSVTTVIAHSDEGGITRDALRELSYTQ FT PYGTMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP FT TTLTTKVATVDGRNSDLAAQMMHSATRFCDIFVENLSTFWGVVANPDGNASQALLHAFN FT IVACAVEPNRHLEMNVMAPWYWVESSALFCDYTPFRSPISSAGYGPQCVYGARLVLAAT FT NSLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQPS FT RRSCNSAGHGTPTATCSHKTPNHDTLDEYIWGSTSCDLFHPAELTSYTAVCVRFRNYLS FT GADGDVRILNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLAQART FT FGALTIGDDIIRGFDKVEKIVKMHKSNNRLDQMPLIDVTGLCQPMIETSTVRASTTTRI FT DPNKLAAATARVELPLAPRCTSSLIPSSDTVPEPEPQVGEPGDNGGCA" XX SQ Sequence 2480 BP; 657 A; 557 C; 584 G; 682 T; 0 other; jx313126 Length: 2480 03-FEB-2013 Type: N Check: 9571 .. 1 atccaatatg ctgactacgg tcggtgtgga ggatccgaaa cgtaagcaag 51 tttcttgtta ctattgatca acagctacat cctacaacga cagctatcat 101 accagccatc tttaacccaa gaattccacg tgaacatacc ttgagtatac 151 aattcttgag caaaatggct gatataccaa actctgataa gattgcttgc 201 ggtcgcaagc ctatgttttg cgagattata aaacttgcaa acaggaagag 251 gttgatcttt aatacaaccg acgagcgtgt gtatgatgcg cggttgaact 301 attgttcaac tgcagattct acagtgcaag cagattgcca catctactgg 351 cgactcaaac tgcgacgcac tgatgcagtt tttgaggaat acaccggtca 401 agggtattca cttgacactg ctgcttaccc acaacagtac actgatatta 451 tcagagggta ttacagtaag cacgtatcaa gctctctcgc tgcaaacact 501 caacattttg tgaacgtttt ggctatgcta cgccatgctg gtgcatgtat 551 tgcacattat tgcatgactg ggaaaattga ttttgacatt ttgagtaaga 601 aaaaacataa aaataaagag gtggtgacct tgagcaatgc tgacagtttg 651 agttttttgc ctcactcggc cttatatctg ccttctcctt tacgtgccag 701 cgatcctgag atctttaata tgttatattt gcttgggtgc gcttgtgatg 751 ctagtattgc tatggataac atctcaaata caagcggagc cgctaagtac 801 tcaatgcccc attataaccc gctgcagctg tctcatgctc tgcatgtgac 851 gatattttac atgttaagct tgatggacag ctgcgggtat ggtgatgacg 901 ccgtcctggc gctaacttct ggcttacatt ccgtgaccac agttattgca 951 cacagtgatg aaggtggtat tacacgtgat gccctacggg aactgtcata 1001 cacgcaacct tatggtacta tgcctgttcc gattgccggt tacttccagc 1051 acattaacgt gctgtttacc acacagcccg cttgggatca atttgctggg 1101 atttgggatt atgttatctt ggcgactgct gctctggtac atctatctga 1151 tcctggaatg actgtcaacg atgttactta ccctacgact ctgacaacta 1201 aagtggcaac ggttgatggg cgtaacagtg acttggctgc tcagatgatg 1251 cacagcgcaa ctcgattctg tgatatattc gtggagaatt taagcacatt 1301 ctggggcgtt gttgctaacc ctgacgggaa cgcaagccag gctctactcc 1351 acgctttcaa catcgtagct tgtgctgtag agccgaacag acatctggag 1401 atgaatgtga tggccccgtg gtattgggta gaaagttctg ctttgttctg 1451 tgattacacg ccatttcgat caccgatatc atccgcaggc tatggccctc 1501 aatgtgtcta tggtgcaagg ctggtacttg ctgctactaa ctcgctagag 1551 tttacaggtg aagcaggtga ttattctgca taccgttttg agtggacaac 1601 aatgcgccac aacccattat ttaacatcct taacaaacgt gttggtgatg 1651 gtcttgccaa tgttgatttc aggttacgcc ccttcaatga atggttgttg 1701 gagggtcaac caagtcgtcg gagttgtaac tcagctggcc acggcacgcc 1751 cacggccaca tgttctcaca aaaccccaaa ccacgacacg ctagatgagt 1801 acatctgggg cagtacgtca tgtgacctgt ttcacccggc ggagttgact 1851 tcttacacag ccgtgtgcgt cagattccgc aactacctat cgggtgctga 1901 cggtgatgtt agaatactga atacgccgac tagagaagta atcgagggaa 1951 acgtggtcac aagatgtgac gggataagat gtctggacag taataaacga 2001 atacagcatg tccctgaagt ggcaaggcgc tactgcatga tggcgcggta 2051 cctcgcacaa gcccgtactt ttggagcact aactattggg gatgatatta 2101 tacgtggttt tgacaaggtt gaaaaaatcg tcaaaatgca taagagtaat 2151 aatagattgg atcaaatgcc tttaattgat gttactgggt tatgtcagcc 2201 aatgattgaa acaagtacag tgcgcgcctc aacaacgacg cgtattgatc 2251 ctaacaaact tgcggctgct acggcccggg ttgagttacc actagcgcca 2301 cgttgtacat cttctttaat cccatcatct gatacagtac ccgaaccaga 2351 gcctcaagtt ggcgaaccgg gtgacaacgg aggctgcgct tgattgtttt 2401 gaaaatgtgc gacgtatgat tagtggtttc ttgaatctgt cgtggctgac 2451 agtaacatct aaagaaaggc aacataaaag