Sequence of DPV Leishmania RNA virus 1-1

Leishmania RNA virus 1 - LgM5313 capsid protein gene, complete cds.

ACC No: JX313126

Dated: 2013-02-03 | Length: 2480 | CRC: -335945822

                
ID   JX313126; SV 1; linear; genomic RNA; STD; VRL; 2480 BP.
XX
AC   JX313126;
XX
DT   03-FEB-2013 (Rel. 115, Created)
DT   03-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE   Leishmania RNA virus 1 - LgM5313 capsid protein gene, complete cds.
XX
KW   .
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OS   Leishmania RNA virus 1 - LgM5313
OC   Viruses; dsRNA viruses; Totiviridae; Leishmaniavirus;
OC   unclassified Leishmaniavirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2480
RX   PUBMED; 23326619.
RA   Zangger H., Ronet C., Desponds C., Kuhlmann F.M., Robinson J.,
RA   Hartley M.A., Prevel F., Castiglioni P., Pratlong F., Bastien P.,
RA   Muller N., Parmentier L., Saravia N.G., Beverley S.M., Fasel N.;
RT   "Detection of leishmania RNA virus in leishmania parasites";
RL   PLoS Negl Trop Dis 7(1):E2006-E2006(2013).
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RN   [2]
RP   1-2480
RA   Zangger H., Desponds C., Fasel N.;
RT   ;
RL   Submitted (16-JUL-2012) to the INSDC.
RL   Biochemistry, University of Lausanne, Boveresses 155, Epalinges, VD 1066,
RL   Switzerland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2480
FT                   /organism="Leishmania RNA virus 1 - LgM5313"
FT                   /host="Leishmania guyanensis M5313 (WHI/BR/78/M5313)"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="1978"
FT                   /db_xref="taxon:1285422"
FT   CDS             165. .2393
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /protein_id="AGD88192.1"
FT                   /translation="MADIPNSDKIACGRKPMFCEIIKLANRKRLIFNTTDERVYDARLN
FT                   YCSTADSTVQADCHIYWRLKLRRTDAVFEEYTGQGYSLDTAAYPQQYTDIIRGYYSKHV
FT                   SSSLAANTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKHKNKEVVTLSNADSLS
FT                   FLPHSALYLPSPLRASDPEIFNMLYLLGCACDASIAMDNISNTSGAAKYSMPHYNPLQL
FT                   SHALHVTIFYMLSLMDSCGYGDDAVLALTSGLHSVTTVIAHSDEGGITRDALRELSYTQ
FT                   PYGTMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP
FT                   TTLTTKVATVDGRNSDLAAQMMHSATRFCDIFVENLSTFWGVVANPDGNASQALLHAFN
FT                   IVACAVEPNRHLEMNVMAPWYWVESSALFCDYTPFRSPISSAGYGPQCVYGARLVLAAT
FT                   NSLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQPS
FT                   RRSCNSAGHGTPTATCSHKTPNHDTLDEYIWGSTSCDLFHPAELTSYTAVCVRFRNYLS
FT                   GADGDVRILNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLAQART
FT                   FGALTIGDDIIRGFDKVEKIVKMHKSNNRLDQMPLIDVTGLCQPMIETSTVRASTTTRI
FT                   DPNKLAAATARVELPLAPRCTSSLIPSSDTVPEPEPQVGEPGDNGGCA"
XX
SQ   Sequence 2480 BP; 657 A; 557 C; 584 G; 682 T; 0 other;

jx313126 Length: 2480  03-FEB-2013  Type: N  Check: 9571  ..

       1  atccaatatg ctgactacgg tcggtgtgga ggatccgaaa cgtaagcaag
      51  tttcttgtta ctattgatca acagctacat cctacaacga cagctatcat
     101  accagccatc tttaacccaa gaattccacg tgaacatacc ttgagtatac
     151  aattcttgag caaaatggct gatataccaa actctgataa gattgcttgc
     201  ggtcgcaagc ctatgttttg cgagattata aaacttgcaa acaggaagag
     251  gttgatcttt aatacaaccg acgagcgtgt gtatgatgcg cggttgaact
     301  attgttcaac tgcagattct acagtgcaag cagattgcca catctactgg
     351  cgactcaaac tgcgacgcac tgatgcagtt tttgaggaat acaccggtca
     401  agggtattca cttgacactg ctgcttaccc acaacagtac actgatatta
     451  tcagagggta ttacagtaag cacgtatcaa gctctctcgc tgcaaacact
     501  caacattttg tgaacgtttt ggctatgcta cgccatgctg gtgcatgtat
     551  tgcacattat tgcatgactg ggaaaattga ttttgacatt ttgagtaaga
     601  aaaaacataa aaataaagag gtggtgacct tgagcaatgc tgacagtttg
     651  agttttttgc ctcactcggc cttatatctg ccttctcctt tacgtgccag
     701  cgatcctgag atctttaata tgttatattt gcttgggtgc gcttgtgatg
     751  ctagtattgc tatggataac atctcaaata caagcggagc cgctaagtac
     801  tcaatgcccc attataaccc gctgcagctg tctcatgctc tgcatgtgac
     851  gatattttac atgttaagct tgatggacag ctgcgggtat ggtgatgacg
     901  ccgtcctggc gctaacttct ggcttacatt ccgtgaccac agttattgca
     951  cacagtgatg aaggtggtat tacacgtgat gccctacggg aactgtcata
    1001  cacgcaacct tatggtacta tgcctgttcc gattgccggt tacttccagc
    1051  acattaacgt gctgtttacc acacagcccg cttgggatca atttgctggg
    1101  atttgggatt atgttatctt ggcgactgct gctctggtac atctatctga
    1151  tcctggaatg actgtcaacg atgttactta ccctacgact ctgacaacta
    1201  aagtggcaac ggttgatggg cgtaacagtg acttggctgc tcagatgatg
    1251  cacagcgcaa ctcgattctg tgatatattc gtggagaatt taagcacatt
    1301  ctggggcgtt gttgctaacc ctgacgggaa cgcaagccag gctctactcc
    1351  acgctttcaa catcgtagct tgtgctgtag agccgaacag acatctggag
    1401  atgaatgtga tggccccgtg gtattgggta gaaagttctg ctttgttctg
    1451  tgattacacg ccatttcgat caccgatatc atccgcaggc tatggccctc
    1501  aatgtgtcta tggtgcaagg ctggtacttg ctgctactaa ctcgctagag
    1551  tttacaggtg aagcaggtga ttattctgca taccgttttg agtggacaac
    1601  aatgcgccac aacccattat ttaacatcct taacaaacgt gttggtgatg
    1651  gtcttgccaa tgttgatttc aggttacgcc ccttcaatga atggttgttg
    1701  gagggtcaac caagtcgtcg gagttgtaac tcagctggcc acggcacgcc
    1751  cacggccaca tgttctcaca aaaccccaaa ccacgacacg ctagatgagt
    1801  acatctgggg cagtacgtca tgtgacctgt ttcacccggc ggagttgact
    1851  tcttacacag ccgtgtgcgt cagattccgc aactacctat cgggtgctga
    1901  cggtgatgtt agaatactga atacgccgac tagagaagta atcgagggaa
    1951  acgtggtcac aagatgtgac gggataagat gtctggacag taataaacga
    2001  atacagcatg tccctgaagt ggcaaggcgc tactgcatga tggcgcggta
    2051  cctcgcacaa gcccgtactt ttggagcact aactattggg gatgatatta
    2101  tacgtggttt tgacaaggtt gaaaaaatcg tcaaaatgca taagagtaat
    2151  aatagattgg atcaaatgcc tttaattgat gttactgggt tatgtcagcc
    2201  aatgattgaa acaagtacag tgcgcgcctc aacaacgacg cgtattgatc
    2251  ctaacaaact tgcggctgct acggcccggg ttgagttacc actagcgcca
    2301  cgttgtacat cttctttaat cccatcatct gatacagtac ccgaaccaga
    2351  gcctcaagtt ggcgaaccgg gtgacaacgg aggctgcgct tgattgtttt
    2401  gaaaatgtgc gacgtatgat tagtggtttc ttgaatctgt cgtggctgac
    2451  agtaacatct aaagaaaggc aacataaaag