Sequence of DPV Sclerotinia sclerotiorum mitovirus 2
Sclerotinia sclerotiorum mitovirus 2 RNA-dependent RNA polymerase gene, complete cds.
ACC No: JX401536
Dated: 2013-05-20 | Length: 2438 | CRC: 940578967
ID JX401536; SV 1; linear; genomic RNA; STD; VRL; 2438 BP. XX AC JX401536; XX DT 14-JAN-2013 (Rel. 115, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Sclerotinia sclerotiorum mitovirus 2 RNA-dependent RNA polymerase gene, DE complete cds. XX KW . XX OS Sclerotinia sclerotiorum mitovirus 2 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2438 RX PUBMED; 23541082. RA Khalifa M.E., Pearson M.N.; RT "Molecular characterization of three mitoviruses co-infecting a RT hypovirulent isolate of Sclerotinia sclerotiorum fungus"; RL Virology 441(1):22-30(2013). XX RN [2] RP 1-2438 RA Khalifa M.E.; RT ; RL Submitted (19-JUL-2012) to the INSDC. RL School of Biological Sciences, Auckland University, R338 Thomas building RL 110, 3A Symonds street, Auckland 1010, New Zealand XX FH Key Location/Qualifiers FH FT source 1. .2438 FT /organism="Sclerotinia sclerotiorum mitovirus 2" FT /host="Sclerotinia sclerotiorum str. 16235" FT /isolate="NZ1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2005" FT /db_xref="taxon:1133728" FT 5'UTR 1. .313 FT CDS 314. .2350 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /protein_id="AGC24231.1" FT /translation="MTQPLVLKLMKWVRKYYYKGTSPNLAAFTRQVVHLFFLWGKTKGW FT KWTATAFKLSRLAITRTLAGQELPRPFGISLCKKTNLPMMLPLQVRLGILRKDFLLISY FT VLTVLQLSRMILGTGVIESYSSITSPCTGSNPFTGASVAIVMKRMGISRIDEPTSFTFP FT WCSTSGPNGVSIATSFSDLMHIPQDLLECLYTLGGPEFKEKVSSLKGFVETTNGILWKL FT TKLNPDKTGSLLRRISIKKDKEYKSRPFAIVDYITQSALTPLHDRLYRVLKSIPQDCTF FT DQNKGFKDLLYGGGPYYSFDLTSATDRFPIFVQEMVLSWLVNEQYASAWVQAMVKLPFR FT TPEGTEVKFERGQPLGAKSSWAMFTISHHFVVQYCAMVLNIDNPRYKILGDDIVICDHA FT LAAKYLETMSQLGVEISPVKTHVSENLFEFAKRFGLQSVEISSFPITALISDINNYVSL FT VATLSTTVCERGNLPLFISGNTPRFWESLLKIGKEDKPRLVNSLVHSAKLLSYLLMSNK FT PYLVAQSDLLRFAEAAGFSSLTIPQVFAAYKRAVLYMKDREIDKLADMSMRFLRPVQSM FT LSQIMFLPWRGRVTVDYRKFIPIIDSIDSNKELYLDFRAEFEEANDLVTLNKVLDDHPI FT RPMPNLNGLQPNRPKLLVGQTRAALLKALVKELTMLAKGEVPE" FT 3'UTR 2351. .2438 XX SQ Sequence 2438 BP; 675 A; 541 C; 554 G; 668 T; 0 other; jx401536 Length: 2438 20-MAY-2013 Type: N Check: 9786 .. 1 ggggttttcg tgatcgtatc acgaatacca cggagatccc caggggtaaa 51 tcctttccac tctaaacaag tgcttcagga tccctgtctt ctctctacgt 101 attgttcacc tacatagtag gaggcagagc aaacgagcct agggctcggt 151 cgctacggcg ctcgactacc cgacggcccc acggtgtggt gtagctagat 201 agccaactag cgtgattacc taccggggag aaacctattc agttcatgtt 251 actgaaccga aaggtcacta catggacggt gtagattaag aggaagttca 301 attggtaagt cttatgactc aaccactagt tttaaaacta atgaaatgag 351 tccgtaagta ttactacaaa ggaacttctc cgaatctagc cgcgtttacc 401 cgacaagtag ttcacttgtt cttcctgtga gggaagacca aggggtgaaa 451 gtggaccgcg acagcgttca agctatctcg gttagccatc acccggactc 501 ttgctggcca ggagcttcca cgaccctttg ggatctcctt gtgtaagaaa 551 acgaacttac ctatgatgtt accattacag gtcaggctcg ggatcttacg 601 gaaggatttc ctcctaatat catacgttct gacagttttg caactgtcac 651 ggatgatact tgggacaggg gtcatcgaat catacagcag tatcactagt 701 ccgtgtacag ggagtaatcc ctttactggc gctagtgttg ctattgtgat 751 gaaacgaatg gggattagtc gcatagatga acccacatct ttcactttcc 801 cttggtgctc tactagtggt ccgaatgggg tgtccattgc tacctctttc 851 tccgacctga tgcatattcc tcaagacctg ctcgagtgtt tgtacactct 901 tggaggtcct gagtttaaag agaaggtttc aagtctgaaa ggattcgtag 951 aaaccactaa tggtattcta tgaaaactga caaaattgaa tccggataaa 1001 accgggagcc ttctccgtag aatatctatc aagaaggata aagagtacaa 1051 gtctcgacca tttgcgatag tcgattatat aacccagagt gcattgactc 1101 ctttacacga tagattatat cgagtattga agtcaatccc tcaagattgt 1151 actttcgacc aaaacaaagg gtttaaggac ttactgtacg gtggcggacc 1201 gtactactcg tttgacctaa catcagctac tgaccgattt cctatattcg 1251 tacaggaaat ggtcttgagc tggttagtca acgagcaata cgcttccgct 1301 tgagtacagg caatggtgaa acttccattc agaacaccag aaggtaccga 1351 ggtgaagttt gagcgtggac aacctctagg agcaaaatcc tcttgagcga 1401 tgttcaccat ctcccatcat ttcgtagtcc agtattgtgc tatggtttta 1451 aacatagaca atcctagata caaaatttta ggagatgaca tcgtcatttg 1501 cgatcatgct ctagcggcga aatacttaga gactatgtct caactgggag 1551 ttgaaatctc tccggttaaa actcatgtaa gtgaaaactt atttgagttt 1601 gccaagagat ttggactcca atcagttgag atatcaagtt tcccgatcac 1651 ggcgttgatt tcagatataa acaactatgt ttcattagtt gctacactgt 1701 ctacaacggt ttgtgagagg ggtaacttac ctctttttat ctccggaaac 1751 actcctcggt tctgggagag cttattgaag attggcaaag aggataaacc 1801 cagactagtg aatagtctgg tccactctgc taaacttcta tcgtatctcc 1851 tgatgtccaa taaaccttac ctggtagctc agtctgacct tttacggttt 1901 gccgaggctg cagggttcag ttcattgact atccctcaag tatttgctgc 1951 ttacaaaaga gcagtgttat acatgaagga tagggagata gataagttgg 2001 cagacatgtc tatgcggttc ttacgacccg tacagtccat gctgtcacaa 2051 ataatgttcc tcccatggcg aggccgggta acggttgact atagaaagtt 2101 cataccaatt attgactcga tcgattccaa caaggaactc tatttagatt 2151 tccgagctga attcgaagaa gccaatgact tggtaacgct aaataaggta 2201 ttggatgatc atccgatcag gccaatgcct aatttgaacg gtctacagcc 2251 gaatcgccct aaactgctgg tcggtcaaac gcgagctgcc ttgttgaagg 2301 cactagtcaa ggaattgact atgctagcga aaggagaagt ccctgagtag 2351 caatactcaa ggtctcaaat accgcaacaa atagggtatt cgtacccggg 2401 gggttgcgtg ttattccact tgtgaagtgg aaaacccc