Sequence of DPV Sclerotinia sclerotiorum mitovirus 2

Sclerotinia sclerotiorum mitovirus 2 RNA-dependent RNA polymerase gene, complete cds.

ACC No: JX401536

Dated: 2013-05-20 | Length: 2438 | CRC: 940578967

                
ID   JX401536; SV 1; linear; genomic RNA; STD; VRL; 2438 BP.
XX
AC   JX401536;
XX
DT   14-JAN-2013 (Rel. 115, Created)
DT   20-MAY-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Sclerotinia sclerotiorum mitovirus 2 RNA-dependent RNA polymerase gene,
DE   complete cds.
XX
KW   .
XX
OS   Sclerotinia sclerotiorum mitovirus 2
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
XX
RN   [1]
RP   1-2438
RX   PUBMED; 23541082.
RA   Khalifa M.E., Pearson M.N.;
RT   "Molecular characterization of three mitoviruses co-infecting a
RT   hypovirulent isolate of Sclerotinia sclerotiorum fungus";
RL   Virology 441(1):22-30(2013).
XX
RN   [2]
RP   1-2438
RA   Khalifa M.E.;
RT   ;
RL   Submitted (19-JUL-2012) to the INSDC.
RL   School of Biological Sciences, Auckland University, R338 Thomas building
RL   110, 3A Symonds street, Auckland 1010, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2438
FT                   /organism="Sclerotinia sclerotiorum mitovirus 2"
FT                   /host="Sclerotinia sclerotiorum str. 16235"
FT                   /isolate="NZ1"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:1133728"
FT   5'UTR           1. .313
FT   CDS             314. .2350
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AGC24231.1"
FT                   /translation="MTQPLVLKLMKWVRKYYYKGTSPNLAAFTRQVVHLFFLWGKTKGW
FT                   KWTATAFKLSRLAITRTLAGQELPRPFGISLCKKTNLPMMLPLQVRLGILRKDFLLISY
FT                   VLTVLQLSRMILGTGVIESYSSITSPCTGSNPFTGASVAIVMKRMGISRIDEPTSFTFP
FT                   WCSTSGPNGVSIATSFSDLMHIPQDLLECLYTLGGPEFKEKVSSLKGFVETTNGILWKL
FT                   TKLNPDKTGSLLRRISIKKDKEYKSRPFAIVDYITQSALTPLHDRLYRVLKSIPQDCTF
FT                   DQNKGFKDLLYGGGPYYSFDLTSATDRFPIFVQEMVLSWLVNEQYASAWVQAMVKLPFR
FT                   TPEGTEVKFERGQPLGAKSSWAMFTISHHFVVQYCAMVLNIDNPRYKILGDDIVICDHA
FT                   LAAKYLETMSQLGVEISPVKTHVSENLFEFAKRFGLQSVEISSFPITALISDINNYVSL
FT                   VATLSTTVCERGNLPLFISGNTPRFWESLLKIGKEDKPRLVNSLVHSAKLLSYLLMSNK
FT                   PYLVAQSDLLRFAEAAGFSSLTIPQVFAAYKRAVLYMKDREIDKLADMSMRFLRPVQSM
FT                   LSQIMFLPWRGRVTVDYRKFIPIIDSIDSNKELYLDFRAEFEEANDLVTLNKVLDDHPI
FT                   RPMPNLNGLQPNRPKLLVGQTRAALLKALVKELTMLAKGEVPE"
FT   3'UTR           2351. .2438
XX
SQ   Sequence 2438 BP; 675 A; 541 C; 554 G; 668 T; 0 other;

jx401536 Length: 2438  20-MAY-2013  Type: N  Check: 9786  ..

       1  ggggttttcg tgatcgtatc acgaatacca cggagatccc caggggtaaa
      51  tcctttccac tctaaacaag tgcttcagga tccctgtctt ctctctacgt
     101  attgttcacc tacatagtag gaggcagagc aaacgagcct agggctcggt
     151  cgctacggcg ctcgactacc cgacggcccc acggtgtggt gtagctagat
     201  agccaactag cgtgattacc taccggggag aaacctattc agttcatgtt
     251  actgaaccga aaggtcacta catggacggt gtagattaag aggaagttca
     301  attggtaagt cttatgactc aaccactagt tttaaaacta atgaaatgag
     351  tccgtaagta ttactacaaa ggaacttctc cgaatctagc cgcgtttacc
     401  cgacaagtag ttcacttgtt cttcctgtga gggaagacca aggggtgaaa
     451  gtggaccgcg acagcgttca agctatctcg gttagccatc acccggactc
     501  ttgctggcca ggagcttcca cgaccctttg ggatctcctt gtgtaagaaa
     551  acgaacttac ctatgatgtt accattacag gtcaggctcg ggatcttacg
     601  gaaggatttc ctcctaatat catacgttct gacagttttg caactgtcac
     651  ggatgatact tgggacaggg gtcatcgaat catacagcag tatcactagt
     701  ccgtgtacag ggagtaatcc ctttactggc gctagtgttg ctattgtgat
     751  gaaacgaatg gggattagtc gcatagatga acccacatct ttcactttcc
     801  cttggtgctc tactagtggt ccgaatgggg tgtccattgc tacctctttc
     851  tccgacctga tgcatattcc tcaagacctg ctcgagtgtt tgtacactct
     901  tggaggtcct gagtttaaag agaaggtttc aagtctgaaa ggattcgtag
     951  aaaccactaa tggtattcta tgaaaactga caaaattgaa tccggataaa
    1001  accgggagcc ttctccgtag aatatctatc aagaaggata aagagtacaa
    1051  gtctcgacca tttgcgatag tcgattatat aacccagagt gcattgactc
    1101  ctttacacga tagattatat cgagtattga agtcaatccc tcaagattgt
    1151  actttcgacc aaaacaaagg gtttaaggac ttactgtacg gtggcggacc
    1201  gtactactcg tttgacctaa catcagctac tgaccgattt cctatattcg
    1251  tacaggaaat ggtcttgagc tggttagtca acgagcaata cgcttccgct
    1301  tgagtacagg caatggtgaa acttccattc agaacaccag aaggtaccga
    1351  ggtgaagttt gagcgtggac aacctctagg agcaaaatcc tcttgagcga
    1401  tgttcaccat ctcccatcat ttcgtagtcc agtattgtgc tatggtttta
    1451  aacatagaca atcctagata caaaatttta ggagatgaca tcgtcatttg
    1501  cgatcatgct ctagcggcga aatacttaga gactatgtct caactgggag
    1551  ttgaaatctc tccggttaaa actcatgtaa gtgaaaactt atttgagttt
    1601  gccaagagat ttggactcca atcagttgag atatcaagtt tcccgatcac
    1651  ggcgttgatt tcagatataa acaactatgt ttcattagtt gctacactgt
    1701  ctacaacggt ttgtgagagg ggtaacttac ctctttttat ctccggaaac
    1751  actcctcggt tctgggagag cttattgaag attggcaaag aggataaacc
    1801  cagactagtg aatagtctgg tccactctgc taaacttcta tcgtatctcc
    1851  tgatgtccaa taaaccttac ctggtagctc agtctgacct tttacggttt
    1901  gccgaggctg cagggttcag ttcattgact atccctcaag tatttgctgc
    1951  ttacaaaaga gcagtgttat acatgaagga tagggagata gataagttgg
    2001  cagacatgtc tatgcggttc ttacgacccg tacagtccat gctgtcacaa
    2051  ataatgttcc tcccatggcg aggccgggta acggttgact atagaaagtt
    2101  cataccaatt attgactcga tcgattccaa caaggaactc tatttagatt
    2151  tccgagctga attcgaagaa gccaatgact tggtaacgct aaataaggta
    2201  ttggatgatc atccgatcag gccaatgcct aatttgaacg gtctacagcc
    2251  gaatcgccct aaactgctgg tcggtcaaac gcgagctgcc ttgttgaagg
    2301  cactagtcaa ggaattgact atgctagcga aaggagaagt ccctgagtag
    2351  caatactcaa ggtctcaaat accgcaacaa atagggtatt cgtacccggg
    2401  gggttgcgtg ttattccact tgtgaagtgg aaaacccc