Sequence of DPV Sclerotinia sclerotiorum mitovirus 3
Sclerotinia sclerotiorum mitovirus 3 RNA-dependent RNA polymerase gene, complete cds.
ACC No: JX401537
Dated: 2013-05-20 | Length: 2588 | CRC: 761321913
ID JX401537; SV 1; linear; genomic RNA; STD; VRL; 2588 BP.
XX
AC JX401537;
XX
DT 14-JAN-2013 (Rel. 115, Created)
DT 20-MAY-2013 (Rel. 116, Last updated, Version 3)
XX
DE Sclerotinia sclerotiorum mitovirus 3 RNA-dependent RNA polymerase gene,
DE complete cds.
XX
KW .
XX
OS Sclerotinia sclerotiorum mitovirus 3
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC Mitovirus; unclassified Mitovirus.
XX
RN [1]
RP 1-2588
RX PUBMED; 23541082.
RA Khalifa M.E., Pearson M.N.;
RT "Molecular characterization of three mitoviruses co-infecting a
RT hypovirulent isolate of Sclerotinia sclerotiorum fungus";
RL Virology 441(1):22-30(2013).
XX
RN [2]
RP 1-2588
RA Khalifa M.E.;
RT ;
RL Submitted (19-JUL-2012) to the INSDC.
RL School of Biological Sciences, Auckland University, R338 Thomas building
RL 110, 3A Symonds street, Auckland 1010, New Zealand
XX
FH Key Location/Qualifiers
FH
FT source 1. .2588
FT /organism="Sclerotinia sclerotiorum mitovirus 3"
FT /host="Sclerotinia sclerotiorum str. 16235"
FT /isolate="NZ1"
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /collection_date="2005"
FT /db_xref="taxon:1279099"
FT 5'UTR 1. .297
FT CDS 298. .2436
FT /codon_start=1
FT /transl_table=4
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AGC24232.1"
FT /translation="MMKHLKLTTYKHLDLNINQADRFSNGAFAALSLKLWYPYVRLLIW
FT SLRLDKPSFMKFATRIESLWIHNGLIFTVKYLKECLRICQHFVSGNPVLVTTEMPISIV
FT RGIPTIIPGNLRLLMHSRDLSVIRGVLSLLSVFRIMKIPSTLKLESITGPFTGLDSTLP
FT KYELIKIKQVLPVFPQIKPIKLKLLRSAGPNCKVSMLGIWLDIKAWSQHPNFKVLIEFI
FT QLFPNYQDFRDMLLQEAYNLRLSIPSKDLHLGKLAIKEEAAGKARVFAITDSITQSVMG
FT PISDAIFKMLRQIPMDGTFNQSAPLDRLVQLSKDGAIPEKDRVFYSYDLSAATDRLPIN
FT LQKDILSIYCGESFALKWSILMTDRDWYLTKEKRNLRYSVGQPMGALSSWAMLALTHHF
FT IVGLAANRVGKLGFDHYALLGDDIVIADKSVADSYYMIMTEILGVQINLSKSLVSTNSF
FT EFAKRLVTLEGEVTPAGPANILLGLRSLNGIPSIILDMVNKGVPVSEESLESWMSTIPT
FT VRKSQLEKVKWVVKGPFGFVPTAEGLASFLTMSSSLTPVRANQIIHAVRYTKFQWDLDM
FT WTKVVKDNIGYRISISELYFPVGFQDYPLDFNESPIKMEIIKRLSQDLRDLGGQRPTFR
FT LIFEGPIIMFNYYRQGYASEIVNYIKYLVHQEPEFKIGGSDPFLPRNFEAFAFSSKFKG
FT QKFFEQVKEHLRANQLPF"
FT 3'UTR 2437. .2588
XX
SQ Sequence 2588 BP; 813 A; 455 C; 487 G; 833 T; 0 other;
jx401537 Length: 2588 20-MAY-2013 Type: N Check: 1172 ..
1 tggggaccaa ccgaagttga tccagagagt aattctctta cgttttatcg
51 cagacgtgag cgaaccaaat ttgttttgat caaggttgga agttcgtcaa
101 tcccccaata ggcgagatcg ggagtaaaat cccgaagtct cacatgagta
151 cttgtattca tctagaccta gacggtcctt atgattaaat gttgttgaat
201 ggtataacca tttccggagt atattatata ctcttagttc ttgttaagaa
251 cctacattta attttaaaga ttcaccaata atattacaaa taatacaatg
301 atgaaacact taaaattaac aacatataaa catcttgatt taaatataaa
351 tcaagcggac cgttttagca atggtgcatt tgcggctctt agtttaaaac
401 tatgatatcc gtatgtgcgc ctattgatct gatcacttcg attagacaag
451 ccttcgttta tgaagtttgc aactcgtatt gagtctttat ggatacacaa
501 tggattaata ttcactgtta agtatcttaa agaatgtttg cgaatttgcc
551 aacactttgt atccggaaat ccagttttgg ttacgactga aatgccgatt
601 tccatagtga gaggtatacc tactattata ccgggaaact tgagactgct
651 tatgcattct cgagatcttt cggttattag aggtgtattg tctttattat
701 cggttttccg tataatgaag atcccctcga ctctgaagct tgaaagtata
751 actggacctt ttacaggttt agattctact cttccgaaat atgaattaat
801 caaaattaaa caagttttac ctgtgtttcc acagattaaa ccgattaaat
851 tgaaacttct tagatcggcg ggccctaatt gtaaagtatc catgcttggt
901 atctgattag atattaaagc atgatctcaa catcctaatt ttaaggtatt
951 aattgaattt attcaactat ttccaaatta tcaggatttt agagatatgc
1001 ttttacagga ggcttataac cttagattat ctataccttc caaagattta
1051 catctcggaa aattagcaat caaggaagaa gctgctggta aagcacgggt
1101 ttttgcaatt actgatagta ttacacaatc agttatgggt cccatctcag
1151 atgctatctt caaaatgtta agacaaatcc ctatggatgg tacttttaat
1201 caaagtgccc ccttagatag attagtccaa ctttctaaag atggagcaat
1251 ccctgagaaa gatagagtct tttactctta tgatctttca gctgctaccg
1301 atagactacc aataaattta cagaaagata ttctttcaat ttattgtggt
1351 gaaagtttcg ccctaaagtg atcaatattg atgactgata gggattgata
1401 cttaaccaaa gagaaacgta atttacgtta ctctgtaggt caaccgatgg
1451 gagctttaag ttcatgagca atgttagctc ttactcatca tttcatagtt
1501 ggtttagcgg caaatcgagt tgggaaactc ggttttgacc attatgcctt
1551 acttggtgat gatatagtaa ttgctgacaa atctgtagca gattcctatt
1601 atatgatcat gactgaaatc ctcggtgttc aaatcaactt atcaaaatcg
1651 ctagttagta caaattcatt tgaatttgca aaacgattag taactttgga
1701 aggagaagtg acaccagcag gaccagcaaa catcttgtta ggcctaagaa
1751 gtcttaatgg aattccttcc attattttag acatggtcaa caagggtgtg
1801 ccggtttctg aggaatctct tgaatcatga atgagtacta tcccaactgt
1851 aagaaaatca cagctggaga aagttaagtg agtggtgaaa ggcccgtttg
1901 gatttgttcc tacagcagaa ggactagcat cgttcttgac gatgtctagt
1951 tcgctaactc ctgttagagc aaaccaaatt atccacgcag ttcgatatac
2001 taaatttcaa tgagatttag atatgtgaac taaagtggtt aaggataata
2051 taggttacag aatttcaatt tctgaactat atttcccggt tggattccag
2101 gattaccctc tagattttaa tgaatcacct attaagatgg agatcattaa
2151 aagactatct caagatttgc gggatttagg aggacaacgt cctactttcc
2201 gacttatctt tgagggtcct ataataatgt ttaattatta tagacaaggg
2251 tacgctagcg aaatagtgaa ctatattaaa tatttagttc accaagaacc
2301 tgagtttaag attggaggat ccgatccttt cttacctcgg aatttcgaag
2351 cgttcgcgtt ctcatctaag ttcaaaggac aaaagttctt tgaacaggtg
2401 aaagaacact tgagagcgaa tcagctccct ttctaggctt gcttaatcgg
2451 attgacaaat ccgctaaagc gaggcctctt aaaagaggcg gtataagctt
2501 tgatttgatt cataactacc taacgtatta agagcgatat cttaatatat
2551 tggataagat gtgagaatca catcagggct tatacccc