Sequence of DPV Sclerotinia sclerotiorum mitovirus 4

Sclerotinia sclerotiorum mitovirus 4 RNA-dependent RNA polymerase gene, complete cds.

ACC No: JX401538

Dated: 2013-05-20 | Length: 2744 | CRC: 2032991849

                
ID   JX401538; SV 1; linear; genomic RNA; STD; VRL; 2744 BP.
XX
AC   JX401538;
XX
DT   14-JAN-2013 (Rel. 115, Created)
DT   20-MAY-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Sclerotinia sclerotiorum mitovirus 4 RNA-dependent RNA polymerase gene,
DE   complete cds.
XX
KW   .
XX
OS   Sclerotinia sclerotiorum mitovirus 4
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae;
OC   Mitovirus; unclassified Mitovirus.
XX
RN   [1]
RP   1-2744
RX   PUBMED; 23541082.
RA   Khalifa M.E., Pearson M.N.;
RT   "Molecular characterization of three mitoviruses co-infecting a
RT   hypovirulent isolate of Sclerotinia sclerotiorum fungus";
RL   Virology 441(1):22-30(2013).
XX
RN   [2]
RP   1-2744
RA   Khalifa M.E.;
RT   ;
RL   Submitted (19-JUL-2012) to the INSDC.
RL   School of Biological Sciences, Auckland University, R338 Thomas building
RL   110, 3A Symonds street, Auckland 1010, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2744
FT                   /organism="Sclerotinia sclerotiorum mitovirus 4"
FT                   /host="Sclerotinia sclerotiorum str. 16235"
FT                   /isolate="NZ1"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:1279100"
FT   5'UTR           1. .464
FT   CDS             465. .2660
FT                   /codon_start=1
FT                   /transl_table=4
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AGC24233.1"
FT                   /translation="MNNKIRNIIIIRLLRLCFNFNNNTWEITRFLETFDEMRQKSGLKY
FT                   TIKYYKAVKLHITRYICGQPLLSNKEGVALDHSGWPKKFLYLKKFIKTNKELRILLTLL
FT                   SFTRTIVPNKKEELKIKPDYSTIDAPYKGKVYTIPAWFIKNWISKHNLKADLPTYDVKD
FT                   HYVSMKSSPNGPATHSSLWSILSLSYPQLQNISTMLGTYRDEFFKFYSTAWNNDFNKSG
FT                   DIINPKWTNYTGKLSIVKDPELKRRVIAMVDYHSQFTLKPIHEMLLNKLSTLKCDRTFT
FT                   QDPKHSWYQNHHKFYSLDLSAATDRFPLQLQKKLLSYIYENKQFCDAWADLLTSRPYID
FT                   SDGNQHFYNVGQPMGAYSSWAAFTISHHLVVAWAAHLCGEYNFSQYIILGDDIVIKNDK
FT                   VANKYITIMTRLGVDISINKTHVSKDTYEFAKRWIKGGIEVSGIPLKGILNQWKNPGVV
FT                   YTTLCSYFDKNPIQPIPLINLMCELYNKLPFGKRRNSFNQMHKMLYDFHHAMRYSLDKL
FT                   TYDELRAYLCNKAREDSFMVPGNNIILHFMKLLLSGGMVSEAEKVSRQILSEYTRIENK
FT                   FKTSYDDLNVLSGYPLLNGYYNHLSSMKDKIIKWENDPNTTLIDSALSLRVEKFDKIAN
FT                   LHRNKTESISTLSKLWKLSMKGLWRERIEDDFEYMTFISRINQDTTDSLLPVYTWESVL
FT                   DNNIQFTLNQLKPLISGNIVKVEKNSWENLDWGDFKV"
FT   3'UTR           2661. .2744
XX
SQ   Sequence 2744 BP; 1025 A; 389 C; 445 G; 885 T; 0 other;

jx401538 Length: 2744  20-MAY-2013  Type: N  Check: 3047  ..

       1  ccgattctcc taatctatta ctagatcagg agaatcccga aaatcggaca
      51  acttcgaata agaagttgtg gttagattaa tcaaagttaa gattaattga
     101  atcttattcc cgttatcatt ttcatcaaca agactcaaga aggaaatgac
     151  attatgtcta tctcttgatg agttatggaa acgcgaaatt ggataagagg
     201  taggctgcga tataagagta tatcaaatta tcagtcattg agattaagtg
     251  accacggcgt gacgattagg gctacctaca ggtagacagc catctaacgc
     301  gacagtagtg gaagtcagct tatgatcagt gaaaattgaa tttgttcact
     351  atcttttgga gtaactggcc aagccaaaat atacaatctt tttatatgaa
     401  gattgaagta ttggacttgg acggtacgta gagttaactg actctatcta
     451  aatgcaagaa tctcatgaat aataaaatta gaaatataat cataataagg
     501  ttattaagac tatgtttcaa ttttaataat aatacatgag aaattactcg
     551  gtttttggaa accttcgatg aaatgaggca gaagtcgggc ctaaaatata
     601  cgatcaagta ttataaagct gtgaagcttc atattacaag atatatatgt
     651  ggtcaacctc tgttgtcaaa caaagaagga gttgctttag atcattctgg
     701  ttgacctaag aaattcttat atcttaaaaa gtttattaaa actaataaag
     751  aattaaggat tttattaact cttttatctt ttacaagaac aatagttcct
     801  aataaaaagg aagagcttaa gatcaaacca gattattcaa caattgatgc
     851  accatataaa ggaaaagtat atactattcc tgcatggttt atcaaaaatt
     901  gaataagtaa acataaccta aaagcagatt taccaactta tgatgttaaa
     951  gatcattatg ttagtatgaa gtcaagtcca aatggacctg ctacacattc
    1001  atcattatga tcaatattat cattaagtta cccacaatta caaaatatat
    1051  caaccatgtt aggtacatat agagatgaat ttttcaaatt ctatagtact
    1101  gcatggaata atgattttaa taaaagtgga gatataatta atccaaaatg
    1151  gactaattat actggtaaat tatcaattgt taaagatcct gaattaaaaa
    1201  gaagagttat tgctatggta gattaccata gtcaatttac tcttaaacct
    1251  atacatgaaa tgttacttaa taaattaagt acattgaaat gtgataggac
    1301  ttttactcaa gatccaaaac attcttgata ccaaaatcac cataagttct
    1351  attctctaga tcttagtgca gcaacggacc gatttccatt acaattacaa
    1401  aagaagttgt tatcatatat atatgagaac aaacaatttt gtgatgcatg
    1451  agcagattta ttaacctcaa gaccttatat tgattccgat ggtaatcaac
    1501  atttttataa tgttggtcaa ccaatgggag cttatagttc ttgagctgcc
    1551  tttaccatat cgcatcatct tgttgttgca tgagccgcac atttgtgtgg
    1601  tgaatacaac tttagtcaat atattatttt aggtgatgat attgttatta
    1651  aaaacgataa agtcgctaat aaatatataa ctattatgac aagattaggt
    1701  gttgatatat ctattaacaa aacacatgta tcaaaagata catatgaatt
    1751  tgctaaaaga tgaataaagg gaggtattga agtaagtgga attcctttaa
    1801  aaggaatact taatcaatga aagaatccag gtgttgttta tacaactctg
    1851  tgttcttatt ttgataagaa tccaatacaa cctatacctt tgataaatct
    1901  aatgtgtgag ttatataaca aattaccatt tggtaaaaga agaaattctt
    1951  ttaatcaaat gcataaaatg ttatatgatt ttcaccatgc catgagatac
    2001  tctttagata aattaacata tgatgagctt agagcttact tatgtaataa
    2051  agctagagag gatagtttca tggttcctgg taataatata attcttcatt
    2101  ttatgaagct attactatca ggaggaatgg tgtctgaagc agagaaagta
    2151  tctagacaga tattatcgga atatactaga attgaaaata aattcaaaac
    2201  tagttatgac gatttaaatg ttctatctgg ataccctcta ttaaatggtt
    2251  attataatca tttatcatcg atgaaagata aaatcatcaa atgagaaaat
    2301  gatcctaata ctactttaat agactcggca ctttcattaa gggttgaaaa
    2351  gtttgataaa attgctaatt tacaccgtaa caaaacggag tctattagta
    2401  cattatcaaa actttgaaaa ctttcaatga aaggattatg acgagaaaga
    2451  atcgaggatg attttgaata tatgactttt ataagtcgta taaatcaaga
    2501  tacaactgat tctctgcttc cggtttatac atgagaaagt gtactagata
    2551  ataatatcca gttcactcta aatcaattaa aaccgttaat ttccggtaat
    2601  attgttaagg ttgaaaagaa ttcttgagag aatttggatt gaggagactt
    2651  taaagtctaa ctcaaaacaa agactttcaa tcgtcttata accctaaaaa
    2701  tactcttcgg agtccctctt cctgcttaaa cgcaggaaga gcgg