Sequence of DPV Sclerotinia sclerotiorum mitovirus 4
Sclerotinia sclerotiorum mitovirus 4 RNA-dependent RNA polymerase gene, complete cds.
ACC No: JX401538
Dated: 2013-05-20 | Length: 2744 | CRC: 2032991849
ID JX401538; SV 1; linear; genomic RNA; STD; VRL; 2744 BP. XX AC JX401538; XX DT 14-JAN-2013 (Rel. 115, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Sclerotinia sclerotiorum mitovirus 4 RNA-dependent RNA polymerase gene, DE complete cds. XX KW . XX OS Sclerotinia sclerotiorum mitovirus 4 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Narnaviridae; OC Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-2744 RX PUBMED; 23541082. RA Khalifa M.E., Pearson M.N.; RT "Molecular characterization of three mitoviruses co-infecting a RT hypovirulent isolate of Sclerotinia sclerotiorum fungus"; RL Virology 441(1):22-30(2013). XX RN [2] RP 1-2744 RA Khalifa M.E.; RT ; RL Submitted (19-JUL-2012) to the INSDC. RL School of Biological Sciences, Auckland University, R338 Thomas building RL 110, 3A Symonds street, Auckland 1010, New Zealand XX FH Key Location/Qualifiers FH FT source 1. .2744 FT /organism="Sclerotinia sclerotiorum mitovirus 4" FT /host="Sclerotinia sclerotiorum str. 16235" FT /isolate="NZ1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2005" FT /db_xref="taxon:1279100" FT 5'UTR 1. .464 FT CDS 465. .2660 FT /codon_start=1 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /protein_id="AGC24233.1" FT /translation="MNNKIRNIIIIRLLRLCFNFNNNTWEITRFLETFDEMRQKSGLKY FT TIKYYKAVKLHITRYICGQPLLSNKEGVALDHSGWPKKFLYLKKFIKTNKELRILLTLL FT SFTRTIVPNKKEELKIKPDYSTIDAPYKGKVYTIPAWFIKNWISKHNLKADLPTYDVKD FT HYVSMKSSPNGPATHSSLWSILSLSYPQLQNISTMLGTYRDEFFKFYSTAWNNDFNKSG FT DIINPKWTNYTGKLSIVKDPELKRRVIAMVDYHSQFTLKPIHEMLLNKLSTLKCDRTFT FT QDPKHSWYQNHHKFYSLDLSAATDRFPLQLQKKLLSYIYENKQFCDAWADLLTSRPYID FT SDGNQHFYNVGQPMGAYSSWAAFTISHHLVVAWAAHLCGEYNFSQYIILGDDIVIKNDK FT VANKYITIMTRLGVDISINKTHVSKDTYEFAKRWIKGGIEVSGIPLKGILNQWKNPGVV FT YTTLCSYFDKNPIQPIPLINLMCELYNKLPFGKRRNSFNQMHKMLYDFHHAMRYSLDKL FT TYDELRAYLCNKAREDSFMVPGNNIILHFMKLLLSGGMVSEAEKVSRQILSEYTRIENK FT FKTSYDDLNVLSGYPLLNGYYNHLSSMKDKIIKWENDPNTTLIDSALSLRVEKFDKIAN FT LHRNKTESISTLSKLWKLSMKGLWRERIEDDFEYMTFISRINQDTTDSLLPVYTWESVL FT DNNIQFTLNQLKPLISGNIVKVEKNSWENLDWGDFKV" FT 3'UTR 2661. .2744 XX SQ Sequence 2744 BP; 1025 A; 389 C; 445 G; 885 T; 0 other; jx401538 Length: 2744 20-MAY-2013 Type: N Check: 3047 .. 1 ccgattctcc taatctatta ctagatcagg agaatcccga aaatcggaca 51 acttcgaata agaagttgtg gttagattaa tcaaagttaa gattaattga 101 atcttattcc cgttatcatt ttcatcaaca agactcaaga aggaaatgac 151 attatgtcta tctcttgatg agttatggaa acgcgaaatt ggataagagg 201 taggctgcga tataagagta tatcaaatta tcagtcattg agattaagtg 251 accacggcgt gacgattagg gctacctaca ggtagacagc catctaacgc 301 gacagtagtg gaagtcagct tatgatcagt gaaaattgaa tttgttcact 351 atcttttgga gtaactggcc aagccaaaat atacaatctt tttatatgaa 401 gattgaagta ttggacttgg acggtacgta gagttaactg actctatcta 451 aatgcaagaa tctcatgaat aataaaatta gaaatataat cataataagg 501 ttattaagac tatgtttcaa ttttaataat aatacatgag aaattactcg 551 gtttttggaa accttcgatg aaatgaggca gaagtcgggc ctaaaatata 601 cgatcaagta ttataaagct gtgaagcttc atattacaag atatatatgt 651 ggtcaacctc tgttgtcaaa caaagaagga gttgctttag atcattctgg 701 ttgacctaag aaattcttat atcttaaaaa gtttattaaa actaataaag 751 aattaaggat tttattaact cttttatctt ttacaagaac aatagttcct 801 aataaaaagg aagagcttaa gatcaaacca gattattcaa caattgatgc 851 accatataaa ggaaaagtat atactattcc tgcatggttt atcaaaaatt 901 gaataagtaa acataaccta aaagcagatt taccaactta tgatgttaaa 951 gatcattatg ttagtatgaa gtcaagtcca aatggacctg ctacacattc 1001 atcattatga tcaatattat cattaagtta cccacaatta caaaatatat 1051 caaccatgtt aggtacatat agagatgaat ttttcaaatt ctatagtact 1101 gcatggaata atgattttaa taaaagtgga gatataatta atccaaaatg 1151 gactaattat actggtaaat tatcaattgt taaagatcct gaattaaaaa 1201 gaagagttat tgctatggta gattaccata gtcaatttac tcttaaacct 1251 atacatgaaa tgttacttaa taaattaagt acattgaaat gtgataggac 1301 ttttactcaa gatccaaaac attcttgata ccaaaatcac cataagttct 1351 attctctaga tcttagtgca gcaacggacc gatttccatt acaattacaa 1401 aagaagttgt tatcatatat atatgagaac aaacaatttt gtgatgcatg 1451 agcagattta ttaacctcaa gaccttatat tgattccgat ggtaatcaac 1501 atttttataa tgttggtcaa ccaatgggag cttatagttc ttgagctgcc 1551 tttaccatat cgcatcatct tgttgttgca tgagccgcac atttgtgtgg 1601 tgaatacaac tttagtcaat atattatttt aggtgatgat attgttatta 1651 aaaacgataa agtcgctaat aaatatataa ctattatgac aagattaggt 1701 gttgatatat ctattaacaa aacacatgta tcaaaagata catatgaatt 1751 tgctaaaaga tgaataaagg gaggtattga agtaagtgga attcctttaa 1801 aaggaatact taatcaatga aagaatccag gtgttgttta tacaactctg 1851 tgttcttatt ttgataagaa tccaatacaa cctatacctt tgataaatct 1901 aatgtgtgag ttatataaca aattaccatt tggtaaaaga agaaattctt 1951 ttaatcaaat gcataaaatg ttatatgatt ttcaccatgc catgagatac 2001 tctttagata aattaacata tgatgagctt agagcttact tatgtaataa 2051 agctagagag gatagtttca tggttcctgg taataatata attcttcatt 2101 ttatgaagct attactatca ggaggaatgg tgtctgaagc agagaaagta 2151 tctagacaga tattatcgga atatactaga attgaaaata aattcaaaac 2201 tagttatgac gatttaaatg ttctatctgg ataccctcta ttaaatggtt 2251 attataatca tttatcatcg atgaaagata aaatcatcaa atgagaaaat 2301 gatcctaata ctactttaat agactcggca ctttcattaa gggttgaaaa 2351 gtttgataaa attgctaatt tacaccgtaa caaaacggag tctattagta 2401 cattatcaaa actttgaaaa ctttcaatga aaggattatg acgagaaaga 2451 atcgaggatg attttgaata tatgactttt ataagtcgta taaatcaaga 2501 tacaactgat tctctgcttc cggtttatac atgagaaagt gtactagata 2551 ataatatcca gttcactcta aatcaattaa aaccgttaat ttccggtaat 2601 attgttaagg ttgaaaagaa ttcttgagag aatttggatt gaggagactt 2651 taaagtctaa ctcaaaacaa agactttcaa tcgtcttata accctaaaaa 2701 tactcttcgg agtccctctt cctgcttaaa cgcaggaaga gcgg