Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus isolate ToSRV-[BR:GO:Goi1646:03] segment DNA-A, complete sequence.
ACC No: JX415188
Dated: 2013-05-20 | Length: 2591 | CRC: 39268999
ID JX415188; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC JX415188; XX DT 20-MAY-2013 (Rel. 116, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato severe rugose virus isolate ToSRV-[BR:GO:Goi1646:03] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2591 RX PUBMED; 23489523. RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.; RT "A study of weeds as potential inoculum sources for a tomato-infecting RT begomovirus in central Brazil"; RL Phytopathology 103(5):436-444(2013). XX RN [2] RP 1-2591 RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.; RT ; RL Submitted (23-JUL-2012) to the INSDC. RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil XX FH Key Location/Qualifiers FH FT source 1. .2591 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Nicandra physaloides voucher CNPH:Begomo:1646" FT /isolate="ToSRV-[BR:GO:Goi1646:03]" FT /mol_type="genomic DNA" FT /country="Brazil:Goias, Goianapolis" FT /collected_by="Alice K. Inoue-Nagata" FT /collection_date="2003" FT /clone="1646" FT /db_xref="taxon:158463" FT CDS 171. .926 FT /codon_start=1 FT /product="CP" FT /note="V1" FT /protein_id="AGL72228.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNDITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923. .1321) FT /codon_start=1 FT /product="REn" FT /note="C3" FT /protein_id="AGL72229.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKYY" FT CDS complement(1068. .1457) FT /codon_start=1 FT /product="Trap" FT /note="C2" FT /protein_id="AGL72230.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1399. .2457) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /protein_id="AGL72231.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNNVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040. .2303) FT /codon_start=1 FT /product="C4" FT /protein_id="AGL72232.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQDQHISIRTFRELS FT HRPTSNPMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2591 BP; 661 A; 528 C; 599 G; 803 T; 0 other; jx415188 Length: 2591 20-MAY-2013 Type: N Check: 4422 .. 1 accggatggc cgcgcgattt ttcacccctt tattttcaat taaagtaaag 51 tgattgtctg tggcccaatc atattgggcc tgtcgagctt agatatttgt 101 aacaacttaa ggcccaagtt gttaaacggc tataaattga acatacactt 151 tacttttgct ttaattcaaa atgcctaagc gtgatgcccc atggcgttta 201 acggcgggaa cttcaaaggt ttcccgctct gtcaattatt ctccccgtgc 251 aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 301 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct 351 agaggctgtg aagggccttg taaggttcag tcttacgagt ctcgtcatga 401 tgtttcccat gtcgggaagg tgatttgtgt gtctgacgtt acacgtggta 451 acgatattac tcaccgtgtt ggtaagcgtt tctgcgtgaa gtctgtatat 501 attttaggga aggtatggat ggacgagagc atcaagttga agaatcacac 551 aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac 601 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact 651 gcaactgtta agaacgatct tcgggatcgt tttcaggtca tgcacaagtt 701 ttatgccaag gttactggtg gacagtatgc cagtaatgag caggcattag 751 tgaagcgctt ttggaaggtc aacaacaacg tagtttacaa ccatcaggag 801 gcagggaaat acgagaatca tactgagaac gccttgctat tgtatatggc 851 atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 901 atttttatga ttcgattact aattaataat atttaaattt tattgaatga 951 ttttcgagta cagcatttac atatgatttg tctgttgcga aacgaacagc 1001 tctgattaca ttattaatgg aaataacgcc taatcgatct agatacaata 1051 agactaaata tttaaatcta gttaaatatg tcgtcccaga agctgtcagt 1101 gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga gatgcaatgc 1151 tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1201 cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt 1251 gatatctccc aaatataaac gccattctct gcctgacgtg cagtgatgag 1301 ttcccctgtg cgtgaatcca tgtcctctgc agtcgatgtg tacgtaaata 1351 gagcacccgc actctatatc aattcgtcgt ctcctgattc ctcgtttttt 1401 agcagctctg tgttgtacct tgatagaggg gggtgttaag gaagacgaat 1451 ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1501 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc 1551 atgggatacc acctttaatt tgaactggct ttccgtattt gcagtttgat 1601 tgccaatcct tttgggcccc aagcaattct ttccagtgct ttaactttag 1651 atagtgcggt gcgatgtcat caatgacgtt atattcaaca ttatttgaat 1701 aaaccctagg attgaaatct aggtgtccac tcaaataatt atgggcccct 1751 aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1801 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt 1851 catctgccca agcttgcatc tctctcggta cgctagtgaa agaggagagg 1901 ggaaacgtag gggcccatgg ctccggagcc cttgtaaata tcctatctaa 1951 attactattt agattgtgaa actgaaataa gaacttttca ggcagcttct 2001 cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt caaggcttct 2051 gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc 2101 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg 2151 atttgacgtc ggacgatgac ttagctctct gaatgttcgg atggaaatgt 2201 gttgatcttg ttggggagac caggtcgaag aatcgttgat tttggcagca 2251 gtagttgccc tcaaattgaa gaagcacgtg gagatgaggc tccccatttt 2301 catggagctc tctgcaaacc ttgatgaact tcttatttgt aggagtgttt 2351 agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2401 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg 2451 atggcatatt tgtaaatatg actcttgcta ccaattggta gcagctctaa 2501 aactcgtatg aattggtagt tatggtagct cttatatatt agaagttctt 2551 taaggagatt gctacacgtg gcggccatcc gttataatat t