Sequence of DPV Sida micrantha mosaic virus
Sida micrantha mosaic virus isolate SiMMV-Santaremensis[BR:780Si4a:08] segment DNA-A, complete sequence.
ACC No: JX415194
Dated: 2013-05-20 | Length: 2693 | CRC: -1740090644
ID JX415194; SV 1; circular; genomic DNA; STD; VRL; 2693 BP.
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AC JX415194;
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DT 20-MAY-2013 (Rel. 116, Created)
DT 20-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Sida micrantha mosaic virus isolate SiMMV-Santaremensis[BR:780Si4a:08]
DE segment DNA-A, complete sequence.
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KW .
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OS Sida micrantha mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2693
RX PUBMED; 23489523.
RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.;
RT "A study of weeds as potential inoculum sources for a tomato-infecting
RT begomovirus in central Brazil";
RL Phytopathology 103(5):436-444(2013).
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RN [2]
RP 1-2693
RA Barreto S.S., Hallwass M., Aquino O.M., Inoue-Nagata A.K.;
RT ;
RL Submitted (23-JUL-2012) to the INSDC.
RL Virology, Embrapa Vegetables, Km 09, BR060, Brasilia, DF 70359-970, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .2693
FT /organism="Sida micrantha mosaic virus"
FT /segment="DNA-A"
FT /host="Sida santaremensis"
FT /strain="Santaremensis"
FT /isolate="SiMMV-Santaremensis[BR:780Si4a:08]"
FT /mol_type="genomic DNA"
FT /country="Brazil:Goias, Luziania"
FT /collected_by="Sarah S. Barreto"
FT /collection_date="2008"
FT /clone="780/Si4a"
FT /db_xref="taxon:228897"
FT CDS 273. .1028
FT /codon_start=1
FT /product="CP"
FT /note="V1"
FT /protein_id="AGL72258.1"
FT /translation="MPKRDPSWRQMAGTSKVSRSTNFSPRGGGGPKYNKASEWVHRPMY
FT RKPRIYRMIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(1025. .1423)
FT /codon_start=1
FT /product="REn"
FT /note="C3"
FT /protein_id="AGL72259.1"
FT /translation="MDSRTGELITAHQAENGVYIWEIPNPLYFKTYKVEDLLYTRTRVY
FT HIQIRFNHNLRRVLGLHKAYLNFQVWTTSLTASGTTYLIRLRRLVMMYLDQLGVITLNN
FT VIRAVRFATDKAYVNYVLEDHDIKFKFY"
FT CDS complement(1170. .1559)
FT /codon_start=1
FT /product="Trap"
FT /note="C2"
FT /protein_id="AGL72260.1"
FT /translation="MLNSSSSTPPSIKPRHRIAKKRAIRRRRVDLECGCTIYQHLNCTG
FT HGFTHRGTHHCTSGREWRIYLGDTKSPVFQDVQGRGLAVHKDASVPHPDTVQPQPQESI
FT GSPQGLPELPSLDDFSDSFWNDLFD"
FT CDS complement(1480. .2559)
FT /codon_start=1
FT /product="Rep"
FT /note="C1"
FT /protein_id="AGL72261.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPNCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEIALQIIREKLPEKFLFQF
FT HNLNSNLDRIFARAPEPWTPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVE
FT GGSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEYNVIDDVAPHYLKLKHWKELIGA
FT QQKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENAALRGWTLHNAKFIFL
FT DAPLYQTETQDCQEESHQA"
FT CDS complement(2142. .2405)
FT /codon_start=1
FT /product="C4"
FT /protein_id="AGL72262.1"
FT /translation="MKMGSLISTCFFNSRATTAAKINDSSTWSPQQGQHISIRTFRELS
FT HRPTSSPMSTRTEIRSSGGNSKSTAEVLEAVARQLTTLPQKP"
XX
SQ Sequence 2693 BP; 656 A; 638 C; 649 G; 750 T; 0 other;
jx415194 Length: 2693 20-MAY-2013 Type: N Check: 7684 ..
1 accggatggc cgcgcgattt tgcccccccc ccccacgtgg cgctctggtg
51 gtcgtgcgat ctctctcccc cccactcgcg cgacgtggaa ctctggtgtc
101 cgcgcgttct ccccccgcgc gctctgcctt taatttaaat taaaggaaat
151 aactttcatc aggaccaatg aaattgcgtc ttttaagcct agatatttgc
201 gaaagacttg ggccctaagt tgtttgacgg ctatataatt aagtcatgtg
251 tgacgtcagg aattgtttcg aaatgcccaa gcgggatccc tcatggcgcc
301 agatggcggg aacctcaaag gttagccgct ctaccaactt ttcccctcgt
351 ggaggaggag gcccaaagta caacaaggcc tctgaatggg ttcacaggcc
401 catgtatagg aagcccagga tatacaggat gataaggact cctgatgttc
451 caagaggctg tgaagggccc tgtaaggtcc agtcctacga gcagcgtcac
501 gacatctcac atgtcggcaa ggtcatgtgc atatctgacg tcacacgtgg
551 caacggtata acccaccgtg tcggtaagcg tttctgcgtt aagtctgtgt
601 acattttagg gaagatatgg atggacgaga acatcaagct caagaatcac
651 acgaacagtg tcatgttctg gttggtcaga gaccgtagac cgtatggtac
701 tcctatggac tttggccagg tgttcaacat gtttgacaac gagcccagca
751 ctgctacggt gaagaacgat ctccgtgatc gttatcaagt tatgcacaag
801 ttctacgcca aagtcactgg tggtcaatat gccagcaatg aacaggctct
851 ggtcaagagg ttctggaagg tcaacaatca tgtggtgtac aaccaccagg
901 aagctggcaa gtatgagaat cacacggaga atgctttgtt actgtatatg
951 gcatgtactc atgcctctaa ccctgtgtat gcaacgctta agattcggat
1001 ctacttctac gattcgataa ccaattaata aaatttgaat tttatatcat
1051 gatcttcaag tacatagttt acataggctt tgtcagtggc aaagcgaaca
1101 gctctaatta cattgttaag cgtgattacg cctaattgat ctaagtacat
1151 cattacaagg cgtctaagcc taatcaaata agtcgttcca gaagctgtca
1201 gagaagtcgt ccagacttgg aagttcaggt aggccttgtg gagacccaat
1251 actctcctga ggttgtggtt gaaccgtatc tggatgtggt acactcgcgt
1301 ccttgtgtac agcaagtcct ctaccttgta cgtcttgaaa tacaggggat
1351 ttggtatctc ccagatatat acgccattct ctgcctgatg tgcagtgatg
1401 agttccccgg tgcgtgaatc catgtcccgt gcagttgagg tgttggtata
1451 tggtgcagcc gcactcaagg tccactcgtc tacgcctgat ggctctcttc
1501 ttggcaatcc tgtgtctcgg tttgatagag gggggcgtcg aggaagatga
1551 atttagcatt gtggagtgtc cagcctctca atgccgcatt ttcctctttg
1601 tctaggaagt ctttatagct ggccccctcc ccaggattgc acagcacgat
1651 tgaagggacc ccaccttcaa tcaaacgagg ctttccgtac ttgcagtttg
1701 tctgccattt ctgttgggcc cctattagct ctttccagtg tttcaacttt
1751 aggtaatgcg gagcgacgtc atcaatgacg ttatactcca cttgatcaga
1801 atataccttt gagttgaaat ccagatggcc actgaagtaa ttatgtgggc
1851 ctaatgctct agcccacatc gtcttgcccg ttctgctacc gccttcaaca
1901 attaaactta tgggcctcaa tggccgcgca gcggaacccc tcccaaaata
1951 atcatcggcc cactcttgca tctcgtctgg cacgttagtg aatgaggaga
2001 gtcgaaacgg aggggtccac ggctccggag cccttgcaaa aatcctatct
2051 aaattactat ttagattgtg aaactgaaat aagaactttt ccggcagctt
2101 ctcccggatt atctgcaagg cgatttcctt ggaaggtgcg tttaaggctt
2151 ctgcggcagc gtcgttagct gtctggcaac cgcctctagc acttctgccg
2201 tcgatttgga attcccccca ctcgatcgta tctccgtcct tgtcgacata
2251 ggacttgacg tcggacgatg acttagctct ctgaatgttc ggatggaaat
2301 gtgttgacct tgttggggag accaggtcga agaatcgttg attttggcag
2351 cagtagttgc cctcgaattg aagaagcacg tggagatgag gctccccatt
2401 ttcatggagc tctctgcaaa ccttgatgaa cttcttattt gtaggagtgt
2451 ttagggtttt taattgggaa agtgcttctt ctttcgataa tgagcaattg
2501 ggatatgtga ggaaataatt tttggctttt atttgaaagc gctttggagc
2551 tgatggcata tttgtaaata tgacccttac taccaattgg tagctgctct
2601 aaaactcata tgaatcggta gttatggtag ctcttatata ctacaacttc
2651 ttaagggcct aaagggccta aagcggccat ccgcactaat att