Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate Homra, complete genome.
ACC No: JX444575
Dated: 2013-03-28 | Length: 2781 | CRC: -2068185753
ID JX444575; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
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AC JX444575;
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DT 03-OCT-2012 (Rel. 114, Created)
DT 28-MAR-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato yellow leaf curl virus isolate Homra, complete genome.
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KW .
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OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2781
RA Haj Ahmad F., Odeh W., Anfoka G.;
RT "First Report on the Association of Squash leaf curl virus and Watermelon
RT chlorotic stunt virus with Tomato Yellow Leaf Curl Disease";
RL Plant Dis. 97(3):428-428(2013).
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RN [2]
RP 1-2781
RA Anfoka G.H., Haj Ahmad F.W.;
RT ;
RL Submitted (30-JUL-2012) to the INSDC.
RL Department of Biotechnology, Faculty of Agricultural Technology, Al-Balqa'
RL Applied University, Al-Salt 19117, Jordan
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CC ##Assembly-Data-START##
CC Assembly Method :: CLC Main Workbench v. 6.6.2
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="tomato"
FT /isolate="Homra"
FT /mol_type="genomic DNA"
FT /country="Jordan"
FT /collection_date="2011"
FT /db_xref="taxon:10832"
FT CDS 314. .664
FT /codon_start=1
FT /product="V2"
FT /db_xref="GOA:A6H4Y2"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:A6H4Y2"
FT /protein_id="AFT90666.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT CDS 474. .1250
FT /codon_start=1
FT /product="V1"
FT /db_xref="GOA:Q6PMS6"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:Q6PMS6"
FT /protein_id="AFT90667.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT CDS complement(1247. .1651)
FT /codon_start=1
FT /product="C3"
FT /db_xref="GOA:K0E2F0"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:K0E2F0"
FT /protein_id="AFT90668.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT CDS complement(1392. .1799)
FT /codon_start=1
FT /product="C2"
FT /db_xref="GOA:K0E4A8"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:K0E4A8"
FT /protein_id="AFT90669.1"
FT /translation="MQASSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHPDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT CDS complement(1708. .2781)
FT /codon_start=1
FT /product="C1"
FT /db_xref="GOA:K0E0C6"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:K0E0C6"
FT /protein_id="AFT90670.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLENPTNKKYIKIC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEVWVSENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHLKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNASFVTLYEPLFT
FT SINQGPTQDSQEETNKA"
FT CDS complement(2337. .2630)
FT /codon_start=1
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:A5A3G7"
FT /protein_id="AFT90671.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
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SQ Sequence 2781 BP; 753 A; 531 C; 612 G; 885 T; 0 other;
jx444575 Length: 2781 28-MAR-2013 Type: N Check: 3811 ..
1 gttgaaatga atcggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg
51 tgtcttactt atacctggac acctaatggc tatttggtaa ttttgtaaaa
101 gtacattgga attcaaaatt caaaattcaa aaatgaaatc attaaagcgg
151 ccatccgtat aatattaccg gatggccgcg ccttttcttt ttatgtggtc
201 cccccgaggg ttccacagac gtcactgtca accaatcaaa ttgcatcctc
251 aaacgttaga taagtgttta tttgtcttta tatacttggt ccccaagtag
301 tttgtcttgc actatgtggg atccacttct aaatgaattt cctgaatccg
351 ttcacggatt tcgttgtatg ttagctatta aatatttgca ggccgttgag
401 gaaacttacg agcccaatac attgggccac gatttaatta gggatcttat
451 atctgttgta agggcccgtg actatgtcga agcgaccagg cgatataatc
501 atttccacgc ccgtctcgaa ggttcgccga aggctgaact tcgacagccc
551 atacagcagc cgtgctgctg tccccattgt ccaaggcaca aacaagcgac
601 gatcatggac gtacaggccc atgtaccgga agcccagaat atacagaatg
651 tatcgaagcc ctgatgttcc tcgtggatgt gaaggcccgt gtaaagtaca
701 gtcttatgag caacgggatg atattaagca cactggtatt gttcgttgtg
751 ttagtgatgt tactcgtgga tctggaatta ctcacagagt tggtaagagg
801 ttctgtgtta agtcgatata ttttttaggt aaagtctgga tggatgaaaa
851 tatcaagaag cagaatcaca ctaatcaggt catgttcttc ttggtccgtg
901 atagaaggcc ctatggaagc agcccaatgg attttggaca ggtttttaat
951 atgtttgata atgagcccag taccgcaacc gtgaagaatg atttgcgtga
1001 taggtttcaa gtgatgagga aatttcatgc tacagttatt ggtgggccct
1051 ctggaatgaa ggaacaggca ttagttaaga gattttttaa aattaacagt
1101 catgtaactt ataatcatca ggaggcagcc aagtatgaga accatactga
1151 aaacgccttg ttattgtata tggcatgtac gcatgcctct aatccagtgt
1201 atgcaactat gaaaatacgc atctatttct acgattcaat atcaaattaa
1251 taaaatttat attttatatc atgagtttct gttacattta ttgtgttttc
1301 aagtacatca tacaatacat gatcaactgc tctgattaca ttgttaattg
1351 aaattacacc aagattatct aaatacttaa gaacttgata tctaaatact
1401 cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa ttcggaagtt
1451 gagaaaacat ttgtgaatcc ccaatacctt cctgatgttg tggttgaatc
1501 ttatctggat ggaaatgatg tcgtggttca ttagaaatgg cctctggctg
1551 tgttctgtta tcttgaaata gaggggattg tttatctccc agataaaaac
1601 gccattctct gcttgaggag cagtgatgag ttcccctgtg cgtgaatcca
1651 tgattgttgc agttgatgtg gaggtagtat gagcatccac agtctaggtc
1701 tacacgctta cgccttattg gtttcttctt ggctatcttg tgttggacct
1751 tgattgatac ttgtgaacag tggctcgtag agggtgacga agcttgcatt
1801 cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatatt
1851 ccctatatga ggaggtaggt cctggattgc agaggaagat agtgggaatt
1901 ccccctttaa tttgaatggg cttcccgtac tttgtgttgc tttgccagtc
1951 cctctgggcc cccatgaatt ccttgaggtg ctttaaataa tgcgggtcta
2001 cgtcatcaat gacgttgtac cacgcatcat tactgtacac ctttgggctt
2051 aggtctagat gtccacataa ataattatgt gggcctagag acctggccca
2101 cattgttttg cctgttctgc tatcaccctc aatgacaata cttatgggtc
2151 tccatggccg cgcagcggaa gacacgacgt tctcggacac ccatacttca
2201 agttcatctg gaacttgatt aaaagaagaa gaaagaaatg gagaaacata
2251 aacttctaaa ggaggactaa aaatcctatc taaatttgaa cttaaattat
2301 gaaattgtaa aatatagtcc tttggggcct tctcttttaa tatattgagg
2351 gcctcggatt tactgcctga attgagtgcc tcggcatatg cgtcgttggc
2401 agattgctga cctcctctag ctgatctgcc atcgatttgg aaaactccaa
2451 aatcaatgaa gtctccgtct ttctccacgt aggtcttgac atctgttgag
2501 ctcttagctg cctgaatgtt cggatggaaa tgtgctgacc tgtttgggga
2551 taccaggtcg aagaaccgtt ggttcttaca ttggtatttg ccttcgaatt
2601 ggataagcac atggagatgt ggttccccat tctcgtggag ttctctgcaa
2651 attttgatgt attttttatt tgttgggttt tctaggtttt ttaattggga
2701 aagtgcttcc tctttagaga gagaacaatt gggatatgtt aggaaataat
2751 ttttggcata tattttaaat aaacgaggca t