Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate PA98-2-1 segment DNA-A, complete sequence.
ACC No: JX501503
Dated: 2013-05-12 | Length: 2590 | CRC: -1633066822
ID JX501503; SV 1; circular; genomic DNA; STD; VRL; 2590 BP.
XX
AC JX501503;
XX
DT 31-OCT-2012 (Rel. 114, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 3)
XX
DE Tomato leaf deformation virus isolate PA98-2-1 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato leaf deformation virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2590
RX PUBMED; 23468482.
RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M.,
RA Gilbertson R.L.;
RT "Characterization of a new world monopartite begomovirus causing leaf curl
RT disease of tomato in ecuador and peru reveals a new direction in
RT geminivirus evolution";
RL J. Virol. 87(10):5397-5413(2013).
XX
RN [2]
RP 1-2590
RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F.,
RA Gilbertson R.L.;
RT ;
RL Submitted (18-AUG-2012) to the INSDC.
RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA
RL 95616, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2590
FT /organism="Tomato leaf deformation virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /isolate="PA98-2-1"
FT /mol_type="genomic DNA"
FT /country="Peru:Ica"
FT /collection_date="Dec-1998"
FT /db_xref="taxon:681518"
FT gene 175. .930
FT /gene="V1"
FT CDS 175. .930
FT /codon_start=1
FT /gene="V1"
FT /product="CP"
FT /db_xref="GOA:K4NZN9"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:K4NZN9"
FT /protein_id="AFV52556.1"
FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY
FT RKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQTLVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRSYFYDSITN"
FT gene complement(508. .825)
FT /gene="C5"
FT CDS complement(508. .825)
FT /codon_start=1
FT /gene="C5"
FT /product="C5"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:K4P288"
FT /protein_id="AFV52561.1"
FT /translation="MVLVFPSFLMVVDHMIVDLPKAPHQSLLVTGILTSCDLSIEPMHN
FT LKTISKIVLHGGSTGLIVEHVEHLAKVHGSAIGSPVSDQPEHDAVSVVLQLDVLVHPYF
FT T"
FT gene complement(927. .1325)
FT /gene="C3"
FT CDS complement(927. .1325)
FT /codon_start=1
FT /gene="C3"
FT /product="REn"
FT /db_xref="GOA:K4P250"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:K4P250"
FT /protein_id="AFV52559.1"
FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHDVEDIPSTTTRVY
FT HIQIRFNHNLRKALQLHKAFLNFQIWTTSVQASGTTYLNRFRHLVLIYLDNLGVISINN
FT VIRSVRFATDKPYVNHVLENHSIKIKLY"
FT gene complement(1072. .1461)
FT /gene="C2"
FT CDS complement(1072. .1461)
FT /codon_start=1
FT /gene="C2"
FT /product="TrAP"
FT /db_xref="GOA:K4PD80"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:K4PD80"
FT /protein_id="AFV52558.1"
FT /translation="MQNSSSSTPPSIKPRHRIAKAKPIRRKRIDLDCGCSFFLHINCVN
FT NGFTHRGEHHCASGREFRFYLGSTKSPLFQDTRRGGHTVHNDESIPHPNPVQPQPEEGA
FT STTQSLLELPNLDDISSSFWDDIFK"
FT gene complement(1412. .2458)
FT /gene="C1"
FT CDS complement(1412. .2458)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep"
FT /db_xref="GOA:K4P028"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:K4P028"
FT /protein_id="AFV52557.1"
FT /translation="MPLPKRFKISAKNYFLTYPQCNLTKEEALSQLQNLQTPTNKKYIK
FT IARELHEDGQHHLHVLLQFQGKFQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVNSYV
FT DKDGDTLQWGEFQVDGRSARGGCQTANDAAAEALNAETKEAALQIIREKLPEKYLFQFH
FT NLNSNLDKIFTKAPEPWVPPFPISSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG
FT CSRTGKTMWARSLGPHNYLSGHLDFNSKVYSNGAEYNVIDDVSPQYLKMKHWKELIGAQ
FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGHSYKDFLDKEENAALRAWTLHNAKFIFLN
FT SSLYQTEA"
FT gene complement(2044. .2301)
FT /gene="C4"
FT CDS complement(2044. .2301)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:K4NZL8"
FT /protein_id="AFV52560.1"
FT /translation="MGNIISTCYSSSKANSSARITDSSTWYPQPGQHISIRTFRELNPA
FT PTSTPTSTRTETLYSGENSRLTDEVLGEVAKQLTTLPQKP"
XX
SQ Sequence 2590 BP; 670 A; 532 C; 603 G; 785 T; 0 other;
jx501503 Length: 2590 12-MAY-2013 Type: N Check: 3314 ..
1 accggatggc cgcgcgattt ttttaccccc ctgttaagtt tgggaccaca
51 cacatacgga caaaaccttt tgtccaatca tggagcgtct ggcgagctta
101 attattaatt cctttagact gagtggtcta taaagaccca gacaaactgt
151 aataattgat atctttaact caaaatgcct aagcgcgatg ccccatggcg
201 cttaatggcg gggacctcaa agattagccg tacttccaat tattcaccca
251 gaggaggtat gggccctaag ttcgacaaga atgcggcctg ggtaaacagg
301 cccatgtaca ggaagcccag agtataccgg gttttaagag gcccagatgt
351 tcccaagggc tgtgaggggc cctgtaaggt ccagtctttc gagcagcgtc
401 acgatatctc ccatattggc aaggtcatgt gtatatcaga tgttacccgt
451 ggtaacggta ttacccaccg agtcggtaag cgtttctgtg tgaagtccgt
501 ctatatttta ggtaaaatat ggatggacga gaacatcaag ttgaagaacc
551 acactaacag cgtcatgttc tggttggtca gagaccggag accctatggc
601 actcccatgg actttggcca ggtgttcaac atgttcgaca atgagcccag
651 tactgccacc gtgaagaacg atcttcgaga tcgttttcag gttatgcata
701 ggttctatgc taaggtcaca ggaggtcagt atgccagtaa cgagcagact
751 ctggtgaggc gcttttggaa ggtcaacaat catgtggtct acaaccatca
801 ggaagctggg aaatacgaga accatacgga gaacgcccta ttattgtaca
851 tggcatgtac tcatgcctct aaccctgtgt atgctacgtt gaaaatacgt
901 agctattttt atgattcaat aacaaattaa taaagtttaa tttttattga
951 atgattctca agtacatgat ttacatatgg tttatctgtt gcaaatcgaa
1001 cagatctaat tacattgtta attgaaataa ctcctaaatt atctaagtaa
1051 attaaaacta aatgtctaaa tctatttaaa tatgtcgtcc cagaagcttg
1101 aactgatgtc gtccagattt ggaagttcaa gaaggctttg tgtagttgaa
1151 gcgccttcct caggttgtgg ttgaaccgga tttggatgtg gtatactctc
1201 gtcgttgtgg acggtatgtc ctccacgtcg tgtatcttga aatagagggg
1251 atttggtact tcccagataa aaacggaatt ctctgcctga tgcacagtga
1301 tgttctcccc ggtgcgtgaa tccattatta acacagttaa tatgcagaaa
1351 gaatgagcag ccacagtcta ggtctatgcg tttccttcta atgggcttcg
1401 cctttgcaat cctatgcctc ggtttgatag agggaggagt tgaggaagat
1451 gaattttgca ttgtggagtg tccacgctct tagagctgca ttttcctctt
1501 tgtcaaggaa gtctttatag ctgtgtccct ctcctggatt gcagagcacg
1551 atagagggta tgccaccttt aatttgaatt ggctttccgt atttacagtt
1601 tgattgccaa tccttctggg cccctatcag ctctttccaa tgtttcatct
1651 ttaaatattg cggactgacg tcatcaatga cgttatattc cgctccattt
1701 gaataaactt tggaattaaa atccaggtgt ccactcagat aattatgtgg
1751 gcctaaggag cgagcccaca tggtcttacc tgtccttgaa catccctcta
1801 ttattatact gataggtctt tccggccgcg cagcggcacc cctaccaaaa
1851 taatcatcag cccattcttg catctcctcc gggacgttag tgaaggagga
1901 gattggaaac ggaggaaccc aaggttccgg agcctttgta aaaattttat
1951 ctaaattaga atttagatta tgaaattgaa ataaatattt ttcagggagt
2001 ttttccctga ttatttgtaa ggctgcctct ttggtttcag cgtttagggc
2051 ttctgcggca gcgtcgttag ctgtttggca acctccccta gcacttcgtc
2101 cgtcaacctg gaattctccc cactgtaaag tgtctccgtc cttgtcgacg
2151 taggagttga cgtcggagct ggatttagct ccctgaatgt tcggatggaa
2201 atgtgctgac ctggttgggg ataccaggtc gaagaatcgg ttattcgtgc
2251 actggaattt gccttggaac tggagtagca cgtggagatg atgttgccca
2301 tcctcgtgaa gttccctggc aattttaatg tatttcttat ttgtgggtgt
2351 ttgtaggttt tgcaattggg aaagtgcttc ttctttggtt aaattgcact
2401 ggggatatgt caagaaataa ttttttgcac ttattttaaa acgcttaggc
2451 agtggcattt ttgtaatata tggcttgtac cccgaatggt ttggcttcaa
2501 aacttatatg aattggggta aaggggtaca atatatagta ggagttccta
2551 agggatctag caacacgtgg cggccatccg ttataatatt