Sequence of DPV Tomato leaf deformation virus

Tomato leaf deformation virus isolate PA10-S8 segment DNA-A, complete sequence.

ACC No: JX501505

Dated: 2013-05-12 | Length: 2591 | CRC: -1868003443

                
ID   JX501505; SV 1; circular; genomic DNA; STD; VRL; 2591 BP.
XX
AC   JX501505;
XX
DT   31-OCT-2012 (Rel. 114, Created)
DT   12-MAY-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Tomato leaf deformation virus isolate PA10-S8 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato leaf deformation virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2591
RX   PUBMED; 23468482.
RA   Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M.,
RA   Gilbertson R.L.;
RT   "Characterization of a new world monopartite begomovirus causing leaf curl
RT   disease of tomato in ecuador and peru reveals a new direction in
RT   geminivirus evolution";
RL   J. Virol. 87(10):5397-5413(2013).
XX
RN   [2]
RP   1-2591
RA   Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F.,
RA   Gilbertson R.L.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA
RL   95616, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2591
FT                   /organism="Tomato leaf deformation virus"
FT                   /segment="DNA-A"
FT                   /host="tomato"
FT                   /isolate="PA10-S8"
FT                   /mol_type="genomic DNA"
FT                   /country="Peru:Ica"
FT                   /collection_date="Jul-2010"
FT                   /db_xref="taxon:681518"
FT   gene            176. .931
FT                   /gene="V1"
FT   CDS             176. .931
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="CP"
FT                   /db_xref="GOA:K4PD87"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:K4PD87"
FT                   /protein_id="AFV52568.1"
FT                   /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY
FT                   RKPRIYRVLRGPDVPKGCEGPCKVQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRSYFYDSITN"
FT   gene            complement(509. .826)
FT                   /gene="C5"
FT   CDS             complement(509. .826)
FT                   /codon_start=1
FT                   /gene="C5"
FT                   /product="C5"
FT                   /db_xref="InterPro:IPR006892"
FT                   /db_xref="UniProtKB/TrEMBL:K4PD92"
FT                   /protein_id="AFV52573.1"
FT                   /translation="MVLVFPSFLMVVDHMVVDLPKAPHQSLLVTGILTSRDLSIEPMHN
FT                   LKTISKIVLHGGGTGLIVEHVKHLAKVHGRAIGSPVSDQPEHDAVSVVLQLDILVHPYF
FT                   T"
FT   gene            complement(928. .1326)
FT                   /gene="C3"
FT   CDS             complement(928. .1326)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="REn"
FT                   /db_xref="GOA:K4P296"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:K4P296"
FT                   /protein_id="AFV52571.1"
FT                   /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHNVEDIPSTTTRVY
FT                   HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINN
FT                   VIRSVRFATDKPYVNHVLENHSIKINLY"
FT   gene            complement(1073. .1462)
FT                   /gene="C2"
FT   CDS             complement(1073. .1462)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="TrAP"
FT                   /db_xref="GOA:K4NZM8"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:K4NZM8"
FT                   /protein_id="AFV52570.1"
FT                   /translation="MQNSSSSTPPSIKPRHKIAKAKPIRRKRIDLDCGCSFFLHINCVN
FT                   NGFTHRGEHHCASGREFRFYLGSTKSPVFQDTQRGGHTVHNDESIPHPNTIQPQPEEGA
FT                   STTQSLLELPSLDDISSSFWDDIFK"
FT   gene            complement(1413. .2459)
FT                   /gene="C1"
FT   CDS             complement(1413. .2459)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="Rep"
FT                   /db_xref="GOA:K4P258"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:K4P258"
FT                   /protein_id="AFV52569.1"
FT                   /translation="MPPPKRFQISAKNYFLTYPHCSLSKEEALSQFQNLNTPINKKYIK
FT                   ICRELHENGEHHLHVLIQFEGKYNCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTLEWGEFQIDGRSARGGCQTANDSYAKALNAGDLHAALAVLKEEQPKDYVLQHH
FT                   NLRANLEKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARRERPISIIIEG
FT                   CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ
FT                   KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGHSYKDFLEKEENAALRAWTLHNAKFIFLN
FT                   SSLYQTEA"
FT   gene            complement(2045. .2302)
FT                   /gene="C4"
FT   CDS             complement(2045. .2302)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:K4P293"
FT                   /protein_id="AFV52572.1"
FT                   /translation="MGNIISTCLSSSKGNTTARINDSSTWYPLPGQHISIRTYRELNPA
FT                   PTSSPILTRTVTPLNGESSKSTAEVLEEAAKLLTTVTPKR"
XX
SQ   Sequence 2591 BP; 665 A; 549 C; 597 G; 780 T; 0 other;

jx501505 Length: 2591  12-MAY-2013  Type: N  Check: 1089  ..

       1  accggatggc cgcgcgattt ttttaccccc cctgttaagt ttgggaccac
      51  acatatacgg acaaaacctt ttgtccaatc atggagcgtc tgacgagctt
     101  aattattaat tcctttagac tgagtggtct ataaagaccc cgacaatctc
     151  taataattga tatctttaac tcaaaatgcc taagcgggat gccccatggc
     201  gcttaatggc ggggacctct aaaattagcc gtacatccaa ttattcaccc
     251  agaggaggta tgggccctaa attcgacaag aatgcggcct gggttaacag
     301  gcccatgtac aggaagccca gaatataccg ggttttaaga ggcccagatg
     351  ttcccaaggg ctgtgagggg ccctgtaagg tccagtcttt cgagcagcgt
     401  cacgatatct cccatactgg caaggtcatg tgtatatcag atgtcacccg
     451  tggtaacggt attacccatc gagtcggtaa gcgtttctgt gtgaagtccg
     501  tctatatttt aggtaaaata tggatggacg agaatatcaa gttgaagaac
     551  cacactaaca gcgtcatgtt ctggttggtc agagaccgga gaccctatag
     601  ctctcccatg gactttggcc aggtgtttaa catgttcgac aatgagccca
     651  gtaccgccac cgtgaagaac gatcttcgag atcgttttca ggttatgcat
     701  aggttctatg ctaaggtcac gggaggtcag tatgccagta acgagcaggc
     751  tctggtgagg cgcttttgga aggtcaacaa ccatgtggtc tacaaccatc
     801  aggaagctgg gaaatacgag aaccatacgg agaacgccct attattgtac
     851  atggcatgta ctcatgcctc taaccctgtg tatgctacgt tgaaaatacg
     901  tagctatttt tatgactcaa taacaaatta ataaagatta atttttattg
     951  aatgattctc aagtacatga tttacatatg gtttatctgt tgcaaatcga
    1001  acagatctaa ttacattgtt aattgaaata actcctaaat tatctaagta
    1051  aaataaaact aaatgtctaa atctatttaa atatgtcgtc ccagaagctt
    1101  gaactgatgt cgtccagact tggaagttca agaaggcttt gtgtagttga
    1151  agcgccttcc tcaggttgtg gttgaatcgt atttggatgt ggtatactct
    1201  cgtcgttgtg gacggtatgt cctccacgtt gtgtatcttg aaatacaggg
    1251  gatttggtac ttcccagata aaaacggaat tctctgcctg atgcacagtg
    1301  atgttctccc cggtgcgtga atccattatt aacacagtta atgtgcagga
    1351  agaatgagca gccacagtct aggtctatac gtttccttct gatgggcttt
    1401  gccttggcaa tcttatgcct cggtttgata gagggaggag ttgaggaaga
    1451  tgaattttgc attgtggagt gtccacgctc ttaaagctgc attctcctct
    1501  ttctcaagga agtctttata gctgtgtccc tctcctggat tgcagagcac
    1551  gatagagggt atgccacctt taatttgaat tggctttccg tatttacagt
    1601  ttgattgcca atccttctgg gcccctatca gctctttcca atgtttcatc
    1651  tttaaatatt gcggactgac gtcatcaatg acgttatagt ccgctccatt
    1701  tgaataaact ttggaattaa aatccaggtg tccactcaga taattatgtg
    1751  ggcctagtgc acgagcccac atagtcttcc ctgtccttga acatccctct
    1801  attattatac tgataggtct ttcccgccgc gcagcggcac ccctaccaaa
    1851  ataatcatca gcccattctt gcatctcctc cgggacgtta gtgaaggagg
    1901  agagtggaaa cggaggagac catggctccg gagcctttga gaaaatcttc
    1951  tctaggttcg ctcttagatt atggtgctgc aacacataat ccttgggttg
    2001  ttcttccttt aagacggcaa gtgctgcatg taaatcgcca gcgtttaacg
    2051  ctttggcgta actgtcgtta gcagtttggc agcctcctct agcacttctg
    2101  ccgtcgattt ggaactctcc ccattcaagg gtgtcaccgt ccttgtcaat
    2151  ataggacttg acgtcggagc tggatttagc tccctgtatg ttcggatgga
    2201  aatgtgctga cctggtaggg gataccaggt cgaagaatcg ttgattcttg
    2251  cagttgtatt tcccttcgaa ctggataagc acgtggagat gatgttcccc
    2301  attttcgtgc agttctctgc aaattttgat gtatttcttg ttaattgggg
    2351  tgtttaggtt ttggaattgg gaaagtgctt cttcctttga taacgagcag
    2401  tgaggatatg taaggaaata atttttggca gatatttgaa agcgtttagg
    2451  cgggggcatt ttggtaattg ttggattggt taccaattga ggtctctcaa
    2501  aaactctata tgaattggta gaacggtaac caatttatac tagaaccctc
    2551  tttgctaaaa tctccacgtg gcggccatcc gttataatat t