Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate PA10-S8 segment DNA-A, complete sequence.
ACC No: JX501505
Dated: 2013-05-12 | Length: 2591 | CRC: -1868003443
ID JX501505; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC JX501505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Tomato leaf deformation virus isolate PA10-S8 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf deformation virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2591 RX PUBMED; 23468482. RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M., RA Gilbertson R.L.; RT "Characterization of a new world monopartite begomovirus causing leaf curl RT disease of tomato in ecuador and peru reveals a new direction in RT geminivirus evolution"; RL J. Virol. 87(10):5397-5413(2013). XX RN [2] RP 1-2591 RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F., RA Gilbertson R.L.; RT ; RL Submitted (18-AUG-2012) to the INSDC. RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA RL 95616, USA XX FH Key Location/Qualifiers FH FT source 1. .2591 FT /organism="Tomato leaf deformation virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="PA10-S8" FT /mol_type="genomic DNA" FT /country="Peru:Ica" FT /collection_date="Jul-2010" FT /db_xref="taxon:681518" FT gene 176. .931 FT /gene="V1" FT CDS 176. .931 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /db_xref="GOA:K4PD87" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K4PD87" FT /protein_id="AFV52568.1" FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY FT RKPRIYRVLRGPDVPKGCEGPCKVQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRSYFYDSITN" FT gene complement(509. .826) FT /gene="C5" FT CDS complement(509. .826) FT /codon_start=1 FT /gene="C5" FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:K4PD92" FT /protein_id="AFV52573.1" FT /translation="MVLVFPSFLMVVDHMVVDLPKAPHQSLLVTGILTSRDLSIEPMHN FT LKTISKIVLHGGGTGLIVEHVKHLAKVHGRAIGSPVSDQPEHDAVSVVLQLDILVHPYF FT T" FT gene complement(928. .1326) FT /gene="C3" FT CDS complement(928. .1326) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:K4P296" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4P296" FT /protein_id="AFV52571.1" FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHNVEDIPSTTTRVY FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINN FT VIRSVRFATDKPYVNHVLENHSIKINLY" FT gene complement(1073. .1462) FT /gene="C2" FT CDS complement(1073. .1462) FT /codon_start=1 FT /gene="C2" FT /product="TrAP" FT /db_xref="GOA:K4NZM8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4NZM8" FT /protein_id="AFV52570.1" FT /translation="MQNSSSSTPPSIKPRHKIAKAKPIRRKRIDLDCGCSFFLHINCVN FT NGFTHRGEHHCASGREFRFYLGSTKSPVFQDTQRGGHTVHNDESIPHPNTIQPQPEEGA FT STTQSLLELPSLDDISSSFWDDIFK" FT gene complement(1413. .2459) FT /gene="C1" FT CDS complement(1413. .2459) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:K4P258" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4P258" FT /protein_id="AFV52569.1" FT /translation="MPPPKRFQISAKNYFLTYPHCSLSKEEALSQFQNLNTPINKKYIK FT ICRELHENGEHHLHVLIQFEGKYNCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGCQTANDSYAKALNAGDLHAALAVLKEEQPKDYVLQHH FT NLRANLEKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARRERPISIIIEG FT CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGHSYKDFLEKEENAALRAWTLHNAKFIFLN FT SSLYQTEA" FT gene complement(2045. .2302) FT /gene="C4" FT CDS complement(2045. .2302) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4P293" FT /protein_id="AFV52572.1" FT /translation="MGNIISTCLSSSKGNTTARINDSSTWYPLPGQHISIRTYRELNPA FT PTSSPILTRTVTPLNGESSKSTAEVLEEAAKLLTTVTPKR" XX SQ Sequence 2591 BP; 665 A; 549 C; 597 G; 780 T; 0 other; jx501505 Length: 2591 12-MAY-2013 Type: N Check: 1089 .. 1 accggatggc cgcgcgattt ttttaccccc cctgttaagt ttgggaccac 51 acatatacgg acaaaacctt ttgtccaatc atggagcgtc tgacgagctt 101 aattattaat tcctttagac tgagtggtct ataaagaccc cgacaatctc 151 taataattga tatctttaac tcaaaatgcc taagcgggat gccccatggc 201 gcttaatggc ggggacctct aaaattagcc gtacatccaa ttattcaccc 251 agaggaggta tgggccctaa attcgacaag aatgcggcct gggttaacag 301 gcccatgtac aggaagccca gaatataccg ggttttaaga ggcccagatg 351 ttcccaaggg ctgtgagggg ccctgtaagg tccagtcttt cgagcagcgt 401 cacgatatct cccatactgg caaggtcatg tgtatatcag atgtcacccg 451 tggtaacggt attacccatc gagtcggtaa gcgtttctgt gtgaagtccg 501 tctatatttt aggtaaaata tggatggacg agaatatcaa gttgaagaac 551 cacactaaca gcgtcatgtt ctggttggtc agagaccgga gaccctatag 601 ctctcccatg gactttggcc aggtgtttaa catgttcgac aatgagccca 651 gtaccgccac cgtgaagaac gatcttcgag atcgttttca ggttatgcat 701 aggttctatg ctaaggtcac gggaggtcag tatgccagta acgagcaggc 751 tctggtgagg cgcttttgga aggtcaacaa ccatgtggtc tacaaccatc 801 aggaagctgg gaaatacgag aaccatacgg agaacgccct attattgtac 851 atggcatgta ctcatgcctc taaccctgtg tatgctacgt tgaaaatacg 901 tagctatttt tatgactcaa taacaaatta ataaagatta atttttattg 951 aatgattctc aagtacatga tttacatatg gtttatctgt tgcaaatcga 1001 acagatctaa ttacattgtt aattgaaata actcctaaat tatctaagta 1051 aaataaaact aaatgtctaa atctatttaa atatgtcgtc ccagaagctt 1101 gaactgatgt cgtccagact tggaagttca agaaggcttt gtgtagttga 1151 agcgccttcc tcaggttgtg gttgaatcgt atttggatgt ggtatactct 1201 cgtcgttgtg gacggtatgt cctccacgtt gtgtatcttg aaatacaggg 1251 gatttggtac ttcccagata aaaacggaat tctctgcctg atgcacagtg 1301 atgttctccc cggtgcgtga atccattatt aacacagtta atgtgcagga 1351 agaatgagca gccacagtct aggtctatac gtttccttct gatgggcttt 1401 gccttggcaa tcttatgcct cggtttgata gagggaggag ttgaggaaga 1451 tgaattttgc attgtggagt gtccacgctc ttaaagctgc attctcctct 1501 ttctcaagga agtctttata gctgtgtccc tctcctggat tgcagagcac 1551 gatagagggt atgccacctt taatttgaat tggctttccg tatttacagt 1601 ttgattgcca atccttctgg gcccctatca gctctttcca atgtttcatc 1651 tttaaatatt gcggactgac gtcatcaatg acgttatagt ccgctccatt 1701 tgaataaact ttggaattaa aatccaggtg tccactcaga taattatgtg 1751 ggcctagtgc acgagcccac atagtcttcc ctgtccttga acatccctct 1801 attattatac tgataggtct ttcccgccgc gcagcggcac ccctaccaaa 1851 ataatcatca gcccattctt gcatctcctc cgggacgtta gtgaaggagg 1901 agagtggaaa cggaggagac catggctccg gagcctttga gaaaatcttc 1951 tctaggttcg ctcttagatt atggtgctgc aacacataat ccttgggttg 2001 ttcttccttt aagacggcaa gtgctgcatg taaatcgcca gcgtttaacg 2051 ctttggcgta actgtcgtta gcagtttggc agcctcctct agcacttctg 2101 ccgtcgattt ggaactctcc ccattcaagg gtgtcaccgt ccttgtcaat 2151 ataggacttg acgtcggagc tggatttagc tccctgtatg ttcggatgga 2201 aatgtgctga cctggtaggg gataccaggt cgaagaatcg ttgattcttg 2251 cagttgtatt tcccttcgaa ctggataagc acgtggagat gatgttcccc 2301 attttcgtgc agttctctgc aaattttgat gtatttcttg ttaattgggg 2351 tgtttaggtt ttggaattgg gaaagtgctt cttcctttga taacgagcag 2401 tgaggatatg taaggaaata atttttggca gatatttgaa agcgtttagg 2451 cgggggcatt ttggtaattg ttggattggt taccaattga ggtctctcaa 2501 aaactctata tgaattggta gaacggtaac caatttatac tagaaccctc 2551 tttgctaaaa tctccacgtg gcggccatcc gttataatat t