Sequence of DPV Tomato severe rugose virus
Tomato severe rugose virus isolate BR:Vic09:10 segment DNA-A, complete sequence.
ACC No: JX865623
Dated: 2013-01-23 | Length: 2594 | CRC: 1570416807
ID JX865623; SV 1; circular; genomic DNA; STD; VRL; 2594 BP.
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AC JX865623;
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DT 19-DEC-2012 (Rel. 115, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Tomato severe rugose virus isolate BR:Vic09:10 segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato severe rugose virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2594
RA Gonzalez-Aguilera J., Tavares S.S., Sobrinho R.R., Xavier C.A.D.,
RA Duenas-Hurtado F., Lara-Rodrigues R.M., da Silva D.J.H., Zerbini F.M.;
RT "Genetic structure of a Brazilian population of the begomovirus Tomato
RT severe rugose virus (ToSRV)";
RL Trop Plant Pathol 37(5):346-353(2012).
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RN [2]
RP 1-2594
RA Gonzalez-Aguilera J., Tavares S.S., Ramos-Sobrinho R., Xavier C.A.D.,
RA Duenas-Hurtado F., Lara-Rodrigues R.M., Silva D.J.H., Zerbini F.M.;
RT ;
RL Submitted (25-SEP-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P. H. Rolfs,
RL s/n, Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMan v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2594
FT /organism="Tomato severe rugose virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Vic09:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /db_xref="taxon:158463"
FT CDS 172. .927
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AGA16359.1"
FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY
FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(924. .1322)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /protein_id="AGA16361.1"
FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY
FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN
FT VIRAVRFATDKSYVNAVLENHSIKFKFY"
FT CDS complement(1069. .1458)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /protein_id="AGA16357.1"
FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQSQPEESI
FT ASPQELPQLPDMDDFTDSFWDDIFN"
FT CDS complement(1400. .2458)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /protein_id="AGA16360.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF
FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTTVPREMQAWADDYFGRGAAARPERPISIIIE
FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA
FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL
FT NTPLYQGTTQSC"
FT CDS complement(2041. .2304)
FT /codon_start=1
FT /product="AC4"
FT /note="AC4 protein"
FT /protein_id="AGA16358.1"
FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS
FT HRPTSNPMSTRTEILSSGGNSKSTEEVQEAVARQLTTLPQKP"
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SQ Sequence 2594 BP; 661 A; 530 C; 599 G; 804 T; 0 other;
jx865623 Length: 2594 23-JAN-2013 Type: N Check: 7250 ..
1 accggatggc cgcgcgattt ttcaccccct ttagtttcaa ttaaagtaaa
51 gtgattgtct gtggcccaat catattgggc ctgtcgagct tagatatttg
101 taacaactta aggcccaagt tgttaaacgg ctataaattg aacatacact
151 ttactttttc tttaattcaa aatgcctaag cgtgatgccc catggcgttt
201 aacggcggga acttcaaagg tttcccgctc tgtcaatttt tctccccgtg
251 caggatatgg acccaaatat aacaaggccg ctgagtgggt gaacaggccc
301 atgtacagga agcctaggat ctaccgtact ttgagaggcc cagatgttcc
351 tagaggctgt gaagggcctt gtaaggttca gtcttacgag tctcgtcatg
401 atgtttccca tgtcgggaag gtgatttgtg tgtctgacgt tacacgtggt
451 aacggtatta ctcaccgtgt tggtaagcgt ttctgcgtga agtctgtata
501 tattttaggg aaggtatgga tggacgagag catcaagttg aagaatcaca
551 caaatagtgt gatgttctgg ttggttagag atcggagacc ttattcgaca
601 cctatggatt ttggccaggt gtttaacatg tttgacaacg agcctagcac
651 tgcaactgtt aagaacgatc ttcgggatcg ttttcaggtc atgcacaagt
701 tttatgccaa ggttactggt ggacagtatg ccagtaatga gcaggcatta
751 gtgaagcgct tttggaaggt caacaaccac gtagtctaca accatcagga
801 ggcagggaaa tacgagaatc atactgagaa cgccttgcta ttgtatatgg
851 catgtactca tgcctctaac cccgtgtatg ctacattgaa aattcggatc
901 tatttttatg attcgattac taattaataa aatttaaatt ttattgaatg
951 attttcgagt acagcattta catatgattt gtctgttgcg aaacgaacag
1001 ctctgattac attattaatg gaaataacgc ctaaacgatc tagatacaat
1051 aagactaaat atttaaatct agttaaatat gtcgtcccag aagctgtcag
1101 tgaagtcgtc catatctgga agttgaggaa gctcttgtgg agatgcaatg
1151 ctctcctcag gttgtgattg aaccgtattt ggacgtggta gactctgctc
1201 gcggtgtaca ttggatcctc cactctgttt atcttgaaat agaggggatt
1251 tgatatctcc caaatataga cgccattctc tgcctgacgt gcagtgatga
1301 gttcccctgt gcgtgaatcc atgtcctctg cagtcgatgt gtacgtaaat
1351 agagcacccg cactctatat caattcgtcg tctcctgatt cctcgttttt
1401 tagcagctct gtgttgtacc ttgatagagg ggggtgttaa ggaagacgaa
1451 tttcgcattg tgctttgtcc aattatttag acttgcattt tcttctttgt
1501 cgaggaaaca tttatagctg gccccctcgc caggattgca aagcacgatg
1551 catgggatac cacctttaat ttgaactggc tttccgtatt tgcagtttga
1601 ttgccaatcc ttttgggccc caagcaattc tttccaatgc tttaatttta
1651 gatagtgcgg tgcgatgtca tcaatgacgt tatattcaac atgatttgaa
1701 taaaccctag gattgaaatc taggtgtcca ctcaaataat tatgggcccc
1751 taatgcacgt gcccacatcg tctttcccgt tcgagaatca ccttcaatga
1801 tgatactaat aggtcgttcc ggccgcgcag cggcacctct cccaaaatag
1851 tcatctgccc aagcttgcat ctctctcggt acggtagtga aagaggagag
1901 gggaaacgta ggggcccatg gctccggagc ccttgtaaat atcctatcta
1951 aattactatt tagattgtga aactgaaata agaacttttc aggcagcttc
2001 tcacggatta tctgcaaggc gacgtctttg gaaggtgcgt tcaaggcttc
2051 tgcggcagcg tcgttagctg tctggcaacc gcctcttgca cttcttccgt
2101 cgatttggaa ttccccccac tcgatagtat ctccgtcctt gtcgacatag
2151 gatttgacgt cggacgatga cttagctctc tgaatgttcg gatggaaatg
2201 tgttgacctt gttggggaga ccaggtcgaa gaatcgttga ttttggcagc
2251 agtagttgcc ctcaaattga agaagcacgt ggagatgagg ctccccattt
2301 tcatggagct ccctgcaaac cttgatgaac tttttatttg taggagtgtt
2351 tagggttttt aattgggaaa gtgcttcttc tttcgataat gagcatttgg
2401 gatatgtgag gaaataattc ttcgctttta tttgaaagcg ctttggagct
2451 gatggcatat ttgtaaatat gactcctact accaattggt agctgctcta
2501 aaactcatat gaattggtag ttatggtagc tcttatatag tataagttct
2551 ctttaaggag attgctacac gtggcggcca tccgttataa tatt