Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate VFTX12-31 coat protein gene, complete cds.
ACC No: JX866617
Dated: 2013-04-19 | Length: 714 | CRC: -1858929082
ID JX866617; SV 1; linear; genomic RNA; STD; VRL; 714 BP. XX AC JX866617; XX DT 19-APR-2013 (Rel. 116, Created) DT 19-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Pepino mosaic virus isolate VFTX12-31 coat protein gene, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Alphaflexiviridae; Potexvirus. XX RN [1] RC Publication Status: Online-Only RP 1-714 RX PUBMED; 23587202. RA Ling K.S., Li R., Bledsoe M.; RT "Pepino mosaic virus genotype shift in North America and development of a RT loop-mediated isothermal amplification for rapid genotype identification"; RL Virol J 10(1):117-117(2013). XX RN [2] RP 1-714 RA Ling K.-S., Li R., Bledsoe M.; RT ; RL Submitted (23-SEP-2012) to the INSDC. RL Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah RL Highway, Charleston, SC 29414, USA XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR v. Lasergene10 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .714 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="VFTX12-31" FT /mol_type="genomic RNA" FT /db_xref="taxon:112229" FT CDS 1. .714 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AFZ62517.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 714 BP; 195 A; 202 C; 150 G; 167 T; 0 other; jx866617 Length: 714 19-APR-2013 Type: N Check: 4840 .. 1 atgcctgaca caacacctgt tgctgctact tcaagtgcac cacccacagc 51 caaagatgct ggtgccaaag ctccttctga cttctcaaat cccaatacag 101 ctcctagtct cagtgatttg aagaaagtca agtatgtctc cacagtgacc 151 tccgtggcca caccagctga aattgaagcc ctaggcaaaa tcttcaccgc 201 tatgggcctc gctgccaatg agactggtcc ggccatgtgg gatctagctc 251 gtgcatatgc tgacgtgcag agttctaaat cggcacagct gattggagct 301 accccttcca accctgcact atcacgccga gcccttgctg ctcagtttga 351 tcgaatcaat ataaccccaa ggcaattttg catgtacttt gccaaagttg 401 tttggaacat acttctcgac agcaatattc caccagcaaa ttgggccaaa 451 cttggttacc aagaagatac aaaatttgct gcattcgact tcttcgatgg 501 agtcaccaac cctgccagcc tgcagcctgc tgatggtctt atcaggcagc 551 caaatgagaa agaactagct gctcactccg tagctaagta cggcgccttg 601 gctaggcaaa agatctccac aggtaattat attaccacac ttggagaagt 651 cacacgtgga cacatgggag gagctaacac catgtacgcg atagacgcac 701 cccctgaact ttaa