Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate BNMX12-04 coat protein gene, complete cds.
ACC No: JX866622
Dated: 2013-04-19 | Length: 714 | CRC: 662562412
ID JX866622; SV 1; linear; genomic RNA; STD; VRL; 714 BP. XX AC JX866622; XX DT 19-APR-2013 (Rel. 116, Created) DT 19-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Pepino mosaic virus isolate BNMX12-04 coat protein gene, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; OC Alphaflexiviridae; Potexvirus. XX RN [1] RC Publication Status: Online-Only RP 1-714 RX PUBMED; 23587202. RA Ling K.S., Li R., Bledsoe M.; RT "Pepino mosaic virus genotype shift in North America and development of a RT loop-mediated isothermal amplification for rapid genotype identification"; RL Virol J 10(1):117-117(2013). XX RN [2] RP 1-714 RA Ling K.-S., Li R., Bledsoe M.; RT ; RL Submitted (23-SEP-2012) to the INSDC. RL Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah RL Highway, Charleston, SC 29414, USA XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR v. Lasergene10 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .714 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="BNMX12-04" FT /mol_type="genomic RNA" FT /db_xref="taxon:112229" FT CDS 1. .714 FT /codon_start=1 FT /product="coat protein" FT /protein_id="AFZ62522.1" FT /translation="MVDNTPVAATSGSPPTAQDAGAKAPADFSNPNTAPSLSDLKKVKY FT VSTVTSVATPTEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 714 BP; 198 A; 201 C; 146 G; 169 T; 0 other; jx866622 Length: 714 19-APR-2013 Type: N Check: 6528 .. 1 atggttgaca ataccccagt tgctgctact tctggttccc ctccaactgc 51 tcaagatgct ggtgccaaag cccctgctga cttttcaaat cctaatacag 101 ctcctagcct cagtgatttg aagaaagtca agtatgtgtc cacagtcact 151 tcagtggcaa caccaactga aatagaagcc ctcggaaaga tcttcaccgc 201 catgggactg gctgctaatg aaactggacc cgctatgtgg gatctagcgc 251 gtgcttatgc tgatgtccaa agttcaaaat ccgcacaact cataggtgcc 301 accccctcaa atccagcact ctcacgccgc gcacttgctg cccaatttga 351 tcgtattaac atcacaccca ggcagttttg catgtatttt gctaaaattg 401 tctggaacat tctgctagac agcaatatcc caccagcaaa ctgggccaag 451 cttggttacc aagaagacac aaaatttgct gctttcgatt tcttcgatgg 501 agtcaccaat ccagcaagtt tgcaaccagc tgacggcctc atccggcaac 551 ccaatgaaaa ggagcttgct gctcactcag ttgctaagta tggcgcacta 601 gccaggcaga aaatttccac tggcaactac ataaccacac ttggagaggt 651 cacacgtgga cacatgggtg gagctaacac catgtacgca attgatgcac 701 ccccagaact ttaa