Sequence of DPV Euphorbia yellow mosaic virus
Euphorbia yellow mosaic virus isolate BR:Vic9:10 segment DNA-A, complete sequence.
ACC No: JX871379
Dated: 2013-02-04 | Length: 2609 | CRC: -982712799
ID JX871379; SV 1; circular; genomic DNA; STD; VRL; 2609 BP.
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AC JX871379;
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DT 04-FEB-2013 (Rel. 115, Created)
DT 04-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE Euphorbia yellow mosaic virus isolate BR:Vic9:10 segment DNA-A, complete
DE sequence.
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KW .
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OS Euphorbia yellow mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2609
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT "Further molecular characterization of weed-associated begomoviruses in
RT Brazil with an emphasis on Sida spp.";
RL Unpublished.
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RN [2]
RP 1-2609
RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA Assuncao I.P., Zerbini F.M.;
RT ;
RL Submitted (26-SEP-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman6.0 v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2609
FT /organism="Euphorbia yellow mosaic virus"
FT /segment="DNA-A"
FT /host="Sida santaremensis"
FT /isolate="BR:Vic9:10"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2010"
FT /db_xref="taxon:598494"
FT CDS 206. .955
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGD98597.1"
FT /translation="MPKRDAPWRSMAGTSKVSRNVNYSPRGGPKIDKASSWVNRPMYRK
FT PRIYRMYRGPDVPKGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRFCI
FT KSVYIIGKIWMDETIKLKNHTNSVMFWLVRDRRPYSSPMDFAQVFNMFDNEPSTATVKN
FT DLRDRFQVMHKFYAKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENALLL
FT YMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(952. .1350)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGD98598.1"
FT /translation="MDLSTGEFITVSQAENSVFIWEVPNPLYFKIIGVEDPIYTSLRIY
FT HIQIRFNYNLRRTLNLRKAFLNFQVWTTSIRASGMTYLSRFRHLVLMYLDQLGVVGLNH
FT VIRAVRFATDRSYVNDVLENHEIKFNFY"
FT CDS complement(1097. .1486)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGD98599.1"
FT /translation="MLNSSSSTPPSIKAQHRIAKRRAIRRRRIDLNCGCSIFLHIDCAD
FT YGFKHRGVHHCVSGREFRFYLGGSKSPLFQDHRGGGPDIHVTPDIPHPDPVQLQPQENT
FT ESTQSFPELPSLDDIDSSFWDDIFK"
FT CDS complement(1398. .2477)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGD98600.1"
FT /translation="MPRNPNSFRLTAKNIFLTYPRCDIPKDEVLQLLRDLPWSVVKPTY
FT IRVARELHADGFPHLHCLIQLSGKSNIKDARFFNLTHPRRSAEFHPNAQSAKDANAVKN
FT YITKEGDYCESGQYKVSGGSKSNKDDVYHNAVNAATAGEALDIIRAGDPKTFIVNYHNV
FT KANVERLFLKPPLPWVPPFQLSSFTNVPSDLQEWADAYFGRGAAARPDRPISIVVEGDS
FT RTGKTMWARALGPHNYLSGHFDFNSRVYSNDVEYNVIDDVAPHYLKLKHWKELIGAQRD
FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRAWTIKNAKFIFLHAP
FT LYQSTAPNSQEESYTSTTD"
FT CDS complement(2036. .2314)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGD98601.1"
FT /translation="MGSPISTVLFNSPASPTSRMLGFSTSLTPDGLPNFTQMRNRPRTP
FT TPSRITSPKRVIIVNPANIRCLGVPSPIKMTSTTTLSMQQLQERLST"
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SQ Sequence 2609 BP; 706 A; 574 C; 622 G; 707 T; 0 other;
jx871379 Length: 2609 04-FEB-2013 Type: N Check: 9664 ..
1 accggatggc cgcgattttt tggtgtcctc taccccggcc caggcccaaa
51 cgcatttagt tttgtccggg accacacaca gcaactaaag ctgaccaatc
101 acatcaatgc tgacgagtct atataatttt gggcctactt ggccgataag
151 ttgtggtccc tatatatttt aaataattga cattattcga tatctttaat
201 ttgaaatgcc taagcgagat gccccatggc gatcaatggc agggacctct
251 aaggtcagtc gtaatgtcaa ttattcgccc cgtggtggtc ctaaaataga
301 caaggcctct tcatgggtga acaggcccat gtacagaaag cccaggatct
351 atcgcatgta tagaggccca gatgttccga agggatgtga agggccttgt
401 aaagttcagt cgtacgagtc tcgtcatgat gtttcccatg ttgggaaagt
451 gatatgtgta tctgacgtga cacggggcaa tggtattacg catcgtgtgg
501 gtaagcgatt ctgcatcaag tctgtgtaca ttatagggaa gatctggatg
551 gatgagacca tcaagttgaa gaaccacacg aatagcgtca tgttttggtt
601 ggtgcgagat cgtcgaccat atagcagtcc tatggatttt gcccaagtgt
651 tcaacatgtt cgacaacgaa cccagtacag ctaccgtgaa gaacgatctc
701 cgcgatcgct tccaagtgat gcacaagttt tacgcgaagg tcactggtgg
751 acaatatgcg agcaacgagc aggcgatcgt caagcgtttt tggaaggtca
801 ataactatgt ggtgtataac caccaagagg cagggaaata cgagaatcat
851 acggagaacg cgttactatt gtatatggca tgtactcatg cctctaatcc
901 tgtttatgcg acgttgaaaa ttcggatcta tttttatgat tcgataacaa
951 attaataaaa attgaatttt atttcatgat tctcgagtac atcatttaca
1001 tatgaacgat cagttgcgaa acgaacagcc ctaattacat gattaagacc
1051 tacgacaccc aattgatcta aatacattaa aactaaatgc ctgaatctac
1101 ttaaatatgt catcccagaa gctcgaatcg atgtcgtcca gacttggaag
1151 ttcaggaaag ctttgcgtag attcagtgtt ctcctgaggt tgtaattgaa
1201 ccggatctgg atgtggtata tccggagtga cgtgtatatc gggtcctcca
1251 ccccgatgat cttgaaatag aggggatttg gaacctccca aataaaaacg
1301 gaattctctg cctgagacac agtgatgaac tccccggtgc ttaaatccat
1351 aatctgcaca gtcgatatgg agaaatatgg aacagccgca gttcaagtca
1401 atccgtcgtc gacgtatagc tctcctcttg gctattcggt gctgtgcttt
1451 gatagagggg ggcgtggagg aagatgaatt tagcattctt gatggtccaa
1501 gctctcaaag atgcgttctc ttctttattg aggaagtctt tatagctagc
1551 cccctcgcct ggattgcaca gcacgattga tggtataccg cctttaattt
1601 gaaccggctt tccatattta cagttggact gccagtccct ttgggcccca
1651 atcaactctt tccaatgctt taactttaga taatgcggag cgacatcatc
1701 aatgacgtta tattccacgt catttgagta aaccctagaa ttgaaatcga
1751 aatgcccact aagataatta tgtgggccta aagccctagc ccacatggtc
1801 ttacccgttc gactatcccc ctcaactacg atactaatag gtctatctgg
1851 ccgcgcagcg gcaccccttc caaaataagc atcagcccat tcttgcaaat
1901 cagacgggac attggtaaat gacgacagct gaaaaggagg aacccaagga
1951 aggggtggct ttagaaagag gcgctcgacg ttagctttga cgttatgata
2001 attcacgatg aacgtcttcg gatcaccagc ccttattatg tcgagagcct
2051 ctcctgcagt tgctgcattg acagcgttgt ggtagacgtc atctttattg
2101 gacttggaac ccccagacac cttatattgg ccggattcac aataatcacc
2151 ctctttggtg atgtaattct tgacggcgtt ggcgtccttg gccgattgcg
2201 catttgggtg aaattcggca gaccgtctgg ggtgagtgag gttgaaaaac
2251 ctagcatcct tgatgttgga cttgccggag agttgaataa gacagtggag
2301 atgggggaac ccatcggcgt ggagctctcg agcgactcgg atgtacgtcg
2351 gcttgacgac agaccatggc aagtcccgaa gcaactgcag aacttcatct
2401 tttggaatat cgcaccgggg ataagtgagg aatatatttt tggccgttag
2451 gcgaaatgaa ttaggattcc gtggcataat tgtaaatata agtcaggaca
2501 ccagatggag tcctctctaa aacctatttt ttgtggtgtc ctggtgtccc
2551 atttatacta aaagcctcta ggacaccagg gggtacgtgg cggccatccg
2601 tataatatt