Sequence of DPV Potato mop-top virus
Potato mop-top virus isolate 23T TGBp1 gene, partial cds; TGBp2 gene, complete cds; and TGBp3 gene, partial cds.
ACC No: JX889608
Dated: 2013-01-16 | Length: 2008 | CRC: -1169591127
ID JX889608; SV 1; linear; genomic RNA; STD; VRL; 2008 BP.
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AC JX889608;
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DT 16-JAN-2013 (Rel. 115, Created)
DT 16-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Potato mop-top virus isolate 23T TGBp1 gene, partial cds; TGBp2 gene,
DE complete cds; and TGBp3 gene, partial cds.
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KW .
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OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Pomovirus.
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RN [1]
RP 1-2008
RA Osorio I., Gutierrez P.A., Marin M.;
RT "Genetic variability of RNA 2 and 3 in Colombian isolates of PMTV";
RL Unpublished.
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RN [2]
RP 1-2008
RA Osorio I., Gutierrez P.A., Marin M.;
RT ;
RL Submitted (01-OCT-2012) to the INSDC.
RL Escuela de Biociencias, Universidad Nacional de Colombia Sede Medellin,
RL Calle 59A No 63 - 20, Medellin, Antioquia, Colombia
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CC ##Assembly-Data-START##
CC Assembly Method :: Bioedit v. 7.1.3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2008
FT /organism="Potato mop-top virus"
FT /host="Solanum tuberosum subsp. Andigena"
FT /isolate="23T"
FT /mol_type="genomic RNA"
FT /country="Colombia:La Union, Antioquia"
FT /collection_date="2010"
FT /db_xref="taxon:37128"
FT CDS <1. .1368
FT /codon_start=1
FT /product="TGBp1"
FT /note="triple gene block protein 51K"
FT /protein_id="AGC30704.1"
FT /translation="RPHRVKKDLPDRVNPVNTQGSSGTTGNAFRTNNNKKTQNWKPRSG
FT PGNRNEGDQTKNIKSDLQQPSEVHPEEQVRPESSAGESVKQQSEPHRVLEDKKQSGKTA
FT GSSVRIPEEGGGGLGSANYLGKRQLDFVAKLCVESGFKSTGKPLKRYPAEFFKSSGLLE
FT KFDKYLSSRLDKGCNLSQRESEVVLKNLRSKRAEQSFLAGAVTGVPGSGKTTLLRKVQC
FT EGGFNSIVILGNPRSKTEFSNLPSCYTAKEILLLGIAIKCEVLLIDEYTLLTSGEILLL
FT QKITNSRIVILFGDRAQGSSNTLCSPEWLQVPVIFQSLTSRRFGKATANLCRRQGFDFE
FT GSEHEDKVVESPYEGSSPPTDINIVFSESTREDLLECGIESTLVSDVQGKEYNTVTLFI
FT PDEDREYLTNAHLRSVAFSRHKFVLEIRCNPELFMQLINGELASKQQPQTDRYGPE"
FT CDS 1355. .1714
FT /codon_start=1
FT /product="TGBp2"
FT /note="triple gene block protein 13K"
FT /protein_id="AGC30705.1"
FT /translation="MVRNNEIGARPNKYWPVVAAVVAICLFGFLTVTNQKHATQSGDNI
FT HKFANGGQYRDGSKSIKYNCNNPRAYNGSSSNNTFSQLFLPVLLIGAALYAYLWFTRPD
FT CSVTCRGDCCRSYGS"
FT CDS 1569. .>2008
FT /codon_start=1
FT /product="TGBp3"
FT /note="triple gene block protein 21K"
FT /protein_id="AGC30706.1"
FT /translation="MDPPVIIHSPNCSCQFCSSELPSTHTCGSQDRTVPSHVEATAAGH
FT MEAKNFSLQYVLLVAFVSVLLGFSFCVYLKSMSNDEASDMTYYYQDLNSVEIKLGKNPL
FT DPEVIKAIHSFQEFPYGNIPSIRREAEFDVQNDESSAVALSGS"
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SQ Sequence 2008 BP; 596 A; 366 C; 488 G; 558 T; 0 other;
jx889608 Length: 2008 16-JAN-2013 Type: N Check: 137 ..
1 agaccacaca gagtgaagaa ggatttgcct gatagagtga atccggttaa
51 cactcaggga tcttctggta cgactggtaa cgcgtttaga acgaataata
101 ataagaaaac acaaaattgg aaacctagga gcggtcctgg taacaggaac
151 gagggcgacc aaacaaaaaa tatcaagtcc gacttacaac aaccaagcga
201 agtgcatcct gaagaacagg tgcgaccaga atcatcagct ggtgagtccg
251 taaagcaaca atcagaacca caccgtgtgc ttgaagataa aaagcagtca
301 gggaaaaccg caggctcaag cgtaagaata cctgaagaag gtggtggtgg
351 tttagggtcg gcgaactacc tcgggaagag gcagctcgac tttgtcgcta
401 aactttgtgt tgaaagtgga ttcaaatcta ctggtaagcc cttgaaaagg
451 tatccggcag agttcttcaa aagttctggt ctgttagaaa aatttgacaa
501 gtacttaagt tcccgtttgg ataaaggttg caacctttcg cagagggaat
551 ctgaagtagt tttaaagaat ttgaggtcga agagggccga acagtcgttt
601 ttggctggtg ccgtgactgg tgttccaggt agcggaaaaa ctactttgct
651 gaggaaagtc cagtgtgaag gaggttttaa ttccattgtg attttgggta
701 accccagatc aaaaactgag ttctcgaatc tgcctagttg ttacacagct
751 aaggagatat tgttactcgg gattgcaatt aagtgtgagg tgcttttaat
801 agacgaatat actcttttga cgagtggaga gatattatta ctgcagaaga
851 ttactaatag taggatagtt atactattcg gagatagagc ccaaggcagt
901 agtaatacat tgtgcagccc ggagtggtta caggtacccg ttatatttca
951 atctctgacg agtaggagat ttggtaaagc tacagcgaat ctgtgcagaa
1001 ggcaaggttt tgacttcgaa ggtagtgaac acgaggacaa ggttgtagaa
1051 agtccctacg aagggagtag tccacccact gatattaaca ttgtgttctc
1101 tgaaagcact cgtgaagatt tacttgagtg cggtatagag tctacgcttg
1151 ttagtgacgt gcaaggaaaa gagtacaaca ctgtgacttt gtttatacct
1201 gacgaggacc gagagtatct gaccaacgcc cacctacgtt ccgtcgcttt
1251 ttcccgacat aagtttgtgc ttgaaatccg ttgtaatcca gaactgttca
1301 tgcagttgat taacggagaa ttggcatcga aacagcaacc acaaacagac
1351 aggtatggtc cggaataacg aaattggagc gcgaccaaat aaatattggc
1401 cggtagttgc ggcagtagtt gctatttgtc ttttcggttt tttaacagtt
1451 accaatcaaa aacacgctac tcaatcaggt gataatatac ataaatttgc
1501 taacggtggc cagtacaggg acggttctaa gagtattaag tataattgta
1551 acaatcccag agcttataat ggatcctcca gtaataatac attctcccaa
1601 ttgttcttgc cagttttgct catcggagct gccctctacg catacttgtg
1651 gttcacaaga ccggactgtt ccgtcacatg tagaggcgac tgctgcaggt
1701 catatggaag ctaaaaattt ttctttgcag tatgttttgt tagtggcttt
1751 tgttagtgtt ttattaggtt tctctttttg tgtgtactta aagagtatgt
1801 ctaatgatga agcttctgat atgacttact attaccagga tttgaattct
1851 gtcgaaatta aactgggaaa gaatccgctt gatccagaag tcattaaggc
1901 tatacacagc tttcaggaat ttccttatgg gaatattcct tcgataagac
1951 gtgaagctga atttgatgtt caaaatgatg agtctagtgc ggtggctttg
2001 tccggttc