Sequence of DPV Potato mop-top virus
Potato mop-top virus isolate BS4T TGBp1 gene, partial cds; TGBp2 gene, complete cds; and TGBp3 gene, partial cds.
ACC No: JX889609
Dated: 2013-01-16 | Length: 2008 | CRC: 544833604
ID JX889609; SV 1; linear; genomic RNA; STD; VRL; 2008 BP.
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AC JX889609;
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DT 16-JAN-2013 (Rel. 115, Created)
DT 16-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Potato mop-top virus isolate BS4T TGBp1 gene, partial cds; TGBp2 gene,
DE complete cds; and TGBp3 gene, partial cds.
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KW .
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OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Pomovirus.
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RN [1]
RP 1-2008
RA Osorio I., Gutierrez P.A., Marin M.;
RT "Genetic variability of RNA 2 and 3 in Colombian isolates of PMTV";
RL Unpublished.
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RN [2]
RP 1-2008
RA Osorio I., Gutierrez P.A., Marin M.;
RT ;
RL Submitted (01-OCT-2012) to the INSDC.
RL Escuela de Biociencias, Universidad Nacional de Colombia Sede Medellin,
RL Calle 59A No 63 - 20, Medellin, Antioquia, Colombia
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CC ##Assembly-Data-START##
CC Assembly Method :: Bioedit v. 7.1.3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2008
FT /organism="Potato mop-top virus"
FT /host="Solanum tuberosum subsp. Andigena"
FT /isolate="BS4T"
FT /mol_type="genomic RNA"
FT /country="Colombia:Siachoque, Boyaca"
FT /collection_date="2010"
FT /db_xref="taxon:37128"
FT CDS <1. .1368
FT /codon_start=1
FT /product="TGBp1"
FT /note="triple gene block protein 51K"
FT /protein_id="AGC30707.1"
FT /translation="RPHRVKKDLPDRVNPVNTQGSSGTTGNAFRKNNNKKTQNWKPRSG
FT PGNRNEGDQTKNIKSDLQQPSEVHPEEQVRPESSTGESVKQQSEPHRVLEDKKQSGKTA
FT GSSVRIPEEGGGGLGSANYLGKRQLDFVAKLCVESGFKSTGKPLKRYPAEFFKSSGLLE
FT KFVKYLSSRLDKGCNLSQRESEVVLKNLRSKRAEQSFLAGAVTGVPGSGKTTLLRKVQC
FT EGGFNSIVILGNPRSKTEFSNLPSCYTAKEILLLGIAIKCEVLLIDEYTLLTSGEILLL
FT QKITNSRIVILFGDRAQGSSNTLCSPEWLQVPVIFQSLTSRRFGKATANLCRRQGFDFE
FT GGEHEDKVVESPYEGSSPNTDINIVFSESTREDLLECGIESTLVSDVQGKEYNTVTLFI
FT PDEDREYLTNAHLRSVAFSRHKFVLEIRCNPELFMQLINGELASKQQPQTDRYGPE"
FT CDS 1355. .1714
FT /codon_start=1
FT /product="TGBp2"
FT /note="triple gene block protein 13K"
FT /protein_id="AGC30708.1"
FT /translation="MVRNNEIGARPNKYWPVVAAVVAICLFGFLTVTNQKHATQSGDNI
FT HKFANGGQYRDGSKSIKYNCNNPRAYNGSSSNNTFSQLFLPVLLIGAALYAYLWFTRPD
FT CSVTCRGDCCRSYGG"
FT CDS 1569. .>2008
FT /codon_start=1
FT /product="TGBp3"
FT /note="triple gene block protein 21K"
FT /protein_id="AGC30709.1"
FT /translation="MDPPVIIHSPNCSCQFCSSELPSTHTCGSQDRTVPLHVEATAAGH
FT TEAKNFSLQYVLLVAFVSVLLGFSFCVYLKSMSSDEASDMTYYYQDLNSVEIKLGKNPL
FT DPEVIKAIHSFQEFPYGNIPSIRREAEFDVQNDESSAVALSGS"
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SQ Sequence 2008 BP; 596 A; 364 C; 490 G; 558 T; 0 other;
jx889609 Length: 2008 16-JAN-2013 Type: N Check: 7663 ..
1 agaccacaca gagtgaagaa ggatttgcct gatagagtga atccggttaa
51 cactcaggga tcttctggta caactggtaa cgcgtttaga aagaataata
101 ataagaaaac acaaaattgg aaacctagga gcggtcctgg aaacaggaac
151 gagggcgacc aaacaaaaaa tatcaagtcc gacttacaac aaccaagcga
201 agtgcaccct gaagaacagg tgcgaccaga atcatcaact ggtgagtccg
251 taaagcaaca atcagaacca caccgtgtgc ttgaagataa aaagcaatca
301 gggaaaaccg caggctcaag cgtgagaata cctgaagaag gtggtggtgg
351 tttagggtcg gcaaactacc tcgggaaaag gcagctcgac tttgtcgcta
401 aactttgtgt tgaaagtgga ttcaaatcta ctggtaagcc cttgaaaagg
451 tatccggcgg agtttttcaa aagttctggt ttgctagaaa aatttgtcaa
501 gtacttaagt tcccgtttgg ataaaggttg caacctttcg cagagggaat
551 ctgaagtagt tttaaagaat ttgaggtcga agagggccga acagtcgttt
601 ttggctggtg ccgtgactgg tgttccaggt agcggaaaaa ctactttgct
651 gaggaaagtc cagtgtgaag gaggttttaa ttccattgtg attttgggta
701 atcccagatc aaagactgaa ttctcgaatc tgcctagttg ttatacagct
751 aaggagatat tgttactcgg gattgcaatt aagtgtgagg tgcttttaat
801 cgacgaatat actcttttga cgagtggtga aatattatta ctgcagaaga
851 tcactaatag tcggatagtt atactattcg gagatagagc ccaaggcagt
901 agtaatacat tgtgcagccc ggagtggtta caggtacccg ttatatttca
951 gtctctgacg agtaggagat ttggtaaagc tacagcgaat ctgtgcagaa
1001 ggcaaggttt tgactttgaa ggtggtgaac acgaggacaa ggttgtagaa
1051 agtccctacg aagggagtag tccaaacact gatattaaca ttgtgttctc
1101 tgaaagcact cgggaagatt tacttgagtg cggtatagag tctacgcttg
1151 ttagtgacgt gcaaggaaaa gagtacaaca ctgtgacttt gtttatacct
1201 gacgaggacc gagagtatct gaccaacgcc cacctacgtt ccgtcgcttt
1251 ttcccgacat aagtttgtgc ttgaaatccg ttgtaatcca gaactgttca
1301 tgcagttgat taacggagaa ttggcatcga aacagcaacc acaaacagat
1351 aggtatggtc cggaataacg aaattggagc gcgaccaaat aaatattggc
1401 cggtagttgc ggcagtagtt gcgatttgtc ttttcggttt tttaacagtt
1451 accaatcaaa aacacgctac tcaatcaggt gataatatac ataaatttgc
1501 taacggtggc cagtacaggg acggttctaa gagtattaag tataattgta
1551 ataatcccag agcttataat ggatcctcca gtaataatac attctcccaa
1601 ttgttcttgc cagttttgct catcggagct gccctctacg catacttgtg
1651 gttcacaaga ccggactgtt ccgttacatg tagaggcgac tgctgcaggt
1701 catacggagg ctaaaaattt ttctttgcag tatgttttgt tagtggcttt
1751 cgtcagtgtt ttattaggtt tctctttttg tgtgtattta aagagtatgt
1801 ctagtgatga agcttctgat atgacttact attaccagga tttgaattct
1851 gtcgaaatta aactgggaaa gaacccgctt gatccagaag tcattaaggc
1901 tatacacagc tttcaggaat tcccttatgg gaatattcct tcgataagac
1951 gtgaagctga atttgatgtt caaaatgatg agtctagtgc ggtggctttg
2001 tccggttc