Sequence of DPV Potato mop-top virus
Potato mop-top virus isolate BS4T CPRT and CP genes, partial cds.
ACC No: JX889611
Dated: 2013-01-16 | Length: 2569 | CRC: -1383998745
ID JX889611; SV 1; linear; genomic RNA; STD; VRL; 2569 BP.
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AC JX889611;
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DT 16-JAN-2013 (Rel. 115, Created)
DT 16-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Potato mop-top virus isolate BS4T CPRT and CP genes, partial cds.
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KW .
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OS Potato mop-top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Pomovirus.
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RN [1]
RP 1-2569
RA Osorio I., Gutierrez P.A., Marin M.;
RT "Genetic variability of RNA 2 and 3 in Colombian isolates of PMTV";
RL Unpublished.
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RN [2]
RP 1-2569
RA Osorio I., Gutierrez P.A., Marin M.;
RT ;
RL Submitted (01-OCT-2012) to the INSDC.
RL Escuela de Biociencias, Universidad Nacional de Colombia Sede Medellin,
RL Calle 59A No 63 - 20, Medellin, Antioquia, Colombia
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CC ##Assembly-Data-START##
CC Assembly Method :: Bioedi v. 7.1.3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2569
FT /organism="Potato mop-top virus"
FT /host="Solanum tuberosum subsp. Andigena"
FT /isolate="BS4T"
FT /mol_type="genomic RNA"
FT /country="Colombia:Siachoque, Boyaca"
FT /collection_date="2010"
FT /db_xref="taxon:37128"
FT CDS <1. .2405
FT /codon_start=3
FT /transl_except=(pos:447. .449,aa:OTHER)
FT /product="CPRT"
FT /note="cp readthrough protein"
FT /protein_id="AGC30712.1"
FT /translation="VRKFISYDQFSAQLRNWREARLNIIEHATSVLSQVSNLGRTHFYS
FT RTERFGGSSLVGDKLYVCLNETRMKTALNNIIVALQTVNGEGRARRLGPREASANTGGE
FT DSALNVAHQLAEVDDLLTDESFLREAVFTQDKYELVNGLRWAGAXQLTAQAFWFDVNAA
FT IDEIDNRLLAAAALRLLPGQANHVDGLVSINYAQLDRALSVVGGNILPQTLEITRDERK
FT RQLPEVPEVRVIDGERVTIRNKDEATVISNHGQGLPWLLAFLLLLLSVVVVYSTIYLND
FT WLYRLSVVRHGKPGGGAARRLSGVSDWLCSRLRARGALNVNRMRKKQACDPSPTGLRKF
FT LTCYNFSYELWDPTGSYDDAQRRIIAEQNSFVEAVRAIDEGDRELAEACLTNVRRILRR
FT HLNYRPDYFDIIEAKAVYLVTVLTNAMSGPVVGVDDDERRAVVAAFNPSDCGLPNLDSC
FT TLDEIKNFDLSEVVIGEGTNVEQAREYLNLCRNIQCMIETIGTVQFLGVLSSYTGPQYP
FT CISQAFAEDKRIRKERLKDKDNITTADIIAYLVSGVMAAYALVAVSKGGITLFKFMKNY
FT AGGGGDGPGSSRRIRQLEAALPSLPQPEELTMMERLRRLQSSDNDLALRRNPSDMLSQV
FT VRDVVADVDSSDIAEFLNDPARMTEAALENRLTRIMSAEGSPVDVIESGGQELISMQVH
FT GESLTVINAGTDSPTVIRSASLSTRHRRSGIEIGSFAVDKVLPYEVEGENDDHGDAGKK
FT PTVAQALMIGGSAGKGQGNLGVTNGKELLKVLGSSRSIGKMSGKMAV"
FT CDS <1. .449
FT /codon_start=3
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AGC30713.1"
FT /translation="VRKFISYDQFSAQLRNWREARLNIIEHATSVLSQVSNLGRTHFYS
FT RTERFGGSSLVGDKLYVCLNETRMKTALNNIIVALQTVNGEGRARRLGPREASANTGGE
FT DSALNVAHQLAEVDDLLTDESFLREAVFTQDKYELVNGLRWAGA"
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SQ Sequence 2569 BP; 688 A; 462 C; 728 G; 691 T; 0 other;
jx889611 Length: 2569 16-JAN-2013 Type: N Check: 400 ..
1 ccgtgaggaa gtttatttct tatgatcaat tctcagctca gttaagaaac
51 tggcgcgaag ctaggttaaa tataattgaa catgccacta gcgtgttgag
101 ccaggtgtct aatttaggta gaactcattt ctacagtaga accgaacgct
151 ttggtggaag ttcacttgtt ggtgataaat tgtacgtatg tctgaatgaa
201 accagaatga aaaccgcgtt gaataatata attgtagcgt tgcagacagt
251 gaacggcgaa gggcgggcaa gacgattagg tccgagagaa gcttccgcga
301 acacaggcgg ggaggatagc gctctgaatg tggcacatca actcgcagag
351 gtggacgatt tattaactga tgaaagtttt ttgagagaag ctgtttttac
401 tcaggacaaa tatgagctcg tgaacgggtt acgctgggct ggtgcatagc
451 aattaaccgc tcaggctttt tggtttgacg tcaacgccgc tatcgacgaa
501 attgataatc gactgctagc ggcggctgcg ttaagactat tgcctgggca
551 ggcaaatcac gtggatggtc tagtgtctat aaattacgca caattggata
601 gagcattgag tgttgttggt gggaatattt tacctcagac gttggagata
651 actcgtgacg aaagaaaaag gcaattacct gaggtccctg aggtcagagt
701 tatcgacggc gagcgtgtca ctattcgtaa caaggatgag gcaacggtca
751 ttagcaatca tggtcaggga cttccctggt tattagcgtt tttactgttg
801 ttgttatctg ttgtggtggt gtattctaca atatacctga acgactggtt
851 gtatcggtta agtgtggtaa ggcatggaaa acctggcggt ggtgcagccc
901 gtaggctgtc gggtgtgtcg gactggttgt gcagtcgctt aagggccaga
951 ggcgctttaa atgtgaatag gatgaggaag aagcaagcat gcgatccgtc
1001 gcccactggg ttgcggaagt tccttacttg ttataacttt tcttatgaac
1051 tttgggatcc tactggtagt tatgacgatg cgcagcggag aattatagcg
1101 gaacagaatt cgtttgtgga agccgtgagg gccatagatg aaggtgacag
1151 ggagttggct gaggcgtgtt tgactaatgt tagacggatc ctcaggagac
1201 atcttaatta ccgacctgat tattttgata ttattgaagc gaaggcggta
1251 tatttggtga cagtgctgac aaacgcaatg tcggggccag ttgttggcgt
1301 tgacgatgac gagcgaagag cggtggtggc cgcgtttaat ccgtcagact
1351 gtgggttacc gaatttggat agttgcactt tggacgaaat taagaatttt
1401 gatttgtccg aagtggtgat cggtgagggt accaatgttg aacaagcaag
1451 agagtatctt aatctttgta gaaatattca gtgtatgatt gagacaattg
1501 gcaccgtcca atttcttggt gtgttgtcgt cgtatacagg tcctcagtat
1551 ccttgtatat cccaggcttt tgctgaagat aagaggataa gaaaagaaag
1601 gctgaaagat aaggacaata taacgacagc agatattatt gcctatttgg
1651 tgagtggggt aatggcagcc tacgctcttg tggcagtaag taaaggaggg
1701 atcacactgt ttaagtttat gaagaattat gcgggtggag gtggcgatgg
1751 gcctggttca agtagaagaa taagacagtt agaggccgct ttgccctccc
1801 ttccgcaacc agaagaactg accatgatgg aacgtttgag gagacttcaa
1851 tcttccgata acgatttagc tttgagaagg aacccgtccg atatgcttag
1901 tcaggtcgta cgtgacgttg tagccgatgt agactccagc gatatcgctg
1951 agtttttgaa tgatcctgct aggatgaccg aagcggctct ggagaaccga
2001 ttgaccagaa taatgagtgc tgaaggttca ccggtggatg taattgagtc
2051 agggggccag gaacttattt ccatgcaagt gcatggagaa agtctaaccg
2101 tcataaatgc cggcaccgac tctcccacag tgatcagatc cgcgtccttg
2151 tcgacgcggc accgtagatc tggtatagaa atcggttctt ttgcagtgga
2201 taaagtgctg ccttacgagg tggaaggcga aaacgacgat cacggtgacg
2251 ccggtaagaa acccactgtc gcccaagctt tgatgattgg gggtagtgcg
2301 ggtaaaggac agggtaatct gggtgttact aatggtaaag aactcttgaa
2351 ggtattaggt agctctcgat ctatagggaa gatgtcgggt aagatggctg
2401 tttaaaccga gtgcgtgtga caggtttacc tctctaaaag tcacaccgtg
2451 gatactacga caagtatcag tgcttacagg acttatgtct gtggttcact
2501 taaatcgaac cattggagca atccaacgtt aatactacgt taagtattag
2551 tgcttacagg gttaaaccg