Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl Multan virus isolate JS-Hi-A-3-2, complete genome.
ACC No: JX914662
Dated: 2012-12-28 | Length: 2736 | CRC: -961053025
ID JX914662; SV 1; circular; genomic DNA; STD; VRL; 2736 BP.
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AC JX914662;
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DT 28-DEC-2012 (Rel. 115, Created)
DT 28-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE Cotton leaf curl Multan virus isolate JS-Hi-A-3-2, complete genome.
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KW .
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OS Cotton leaf curl Multan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2736
RA Ji Y., Zhang H., Cai Z., Zhou Y.;
RT "Genomic characterization of cotton leaf curl Multan virus infecting
RT Hibiscus rosa-sinensis in Jiangsu provinces";
RL Unpublished.
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RN [2]
RP 1-2736
RA Ji Y., Zhang H., Cai Z., Zhou Y.;
RT ;
RL Submitted (09-OCT-2012) to the INSDC.
RL Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL Zhongling Street No. 50, Nanjing, Jiangsu 210014, China
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2736
FT /organism="Cotton leaf curl Multan virus"
FT /host="Hibiscus rosa-sinensis"
FT /isolate="JS-Hi-A-3-2"
FT /mol_type="genomic DNA"
FT /country="China:Jiangsu"
FT /collection_date="09-May-2012"
FT /db_xref="taxon:223252"
FT gene 115. .480
FT /gene="V2"
FT CDS 115. .480
FT /codon_start=1
FT /gene="V2"
FT /product="V2 protein"
FT /protein_id="AGA96094.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL
FT ICILRSRNYVEASCRYRHFNARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT EAQNISDVQKSGCSKGL"
FT gene 275. .1045
FT /gene="V1"
FT CDS 275. .1045
FT /codon_start=1
FT /gene="V1"
FT /product="V1 protein"
FT /protein_id="AGA96095.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAVPIVRVTKQQAWT
FT NRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1048. .1452)
FT /gene="C3"
FT CDS complement(1048. .1452)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="AGA96096.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI
FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY"
FT gene complement(1145. .1597)
FT /gene="C2"
FT CDS complement(1145. .1597)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="AGA96097.1"
FT /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPNPVQLQH
FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN"
FT gene complement(1494. .2585)
FT /gene="C1"
FT CDS complement(1494. .2585)
FT /codon_start=1
FT /gene="C1"
FT /product="C1 protein"
FT /protein_id="AGA96098.1"
FT /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK
FT VCRELHEDGSPHLHVLIQFEGKLICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT YSASNQSTAQGSEETQQEEESRS"
FT gene complement(2126. .2428)
FT /gene="C4"
FT CDS complement(2126. .2428)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AGA96099.1"
FT /translation="MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQA
FT QMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN"
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SQ Sequence 2736 BP; 706 A; 545 C; 643 G; 842 T; 0 other;
jx914662 Length: 2736 28-DEC-2012 Type: N Check: 3330 ..
1 accggatggc cgcgcgattt tttgtgggcc ccctatttat gagattgctc
51 cctcaaagct aaataacgct cccgcccact ataagtactt gcgcactaag
101 tttcaaattc aaacatgtgg gatccattgt taaacgaatt tcctgatacg
151 gtgcacgggt ttcggtgtat gctttctgtc aaatatttgc aacttttgtc
201 gcaggattat tcaccggata ccctaggtta cgatttaata cgggatttaa
251 tctgtattct acgttcccgt aattatgtcg aagcgagctg cagatatcgt
301 catttcaacg cccgcgtcga aagtacgtcg gcgtctgaac ttcggcagcc
351 catacaccaa ccgtgttgct gtccccattg tccgcgtcac aaaacaacag
401 gcatggacaa acaggcctat gaacaggaag cccagaatat atcggatgta
451 cagaagtccg gatgttccaa agggttgtga aggcccatgt aaggtacagt
501 cttttgagtc cagacatgat gttgttcata ttggtaaggt aatgtgtatt
551 tctgatgtta ctcgtggtgt cggtttgacc catcgtattg gtaaacgttt
601 ttgtgtcaag tcagtttatg ttttaggtaa gatatggatg gatgaaaata
651 taaagaccag gaatcacacg aattcggtca tgttcttttt agttcgcgat
701 cgacgacctg ttgacaaacc tcaggatttt ggtgaggtat tcaatatgtt
751 tgataacgaa cccagtacag caactgtgaa gaatagtcat agggaccgtt
801 atcaggtgtt gaggaaatgg catgcaaccg ttacgggtgg tcaatatgcg
851 agtaaggaac aggctttggt caagaagttt gtcagagtta acaattatgt
901 tgtttacaat caacaggaag caggaaaata cgagaatcat acggaaaatg
951 cgttaatgct ttatatggct tgtacccacg ctagcaaccc tgtttatgct
1001 acgttgaaga ttaggatata tttttatgac tctgtaacga attgatgtta
1051 ataaagtttg aattctattt ctgaatattg atctacatac atagtttgtt
1101 ggattacatt gtacaataca tgttctacag ctttaataac taaattaatt
1151 gaaattacac cgagattgtt cagatatttg aggacttggg ttttgaatac
1201 ccttaagaaa agaccagtct gagggtgtaa ggtcgtccag attcggaagg
1251 ttagaaaaca cttgtgcagt cccagagctt tccgagtgtt gtagttgaac
1301 tggattcgga tcgtgagtat gtccatattc gtcgtgaatg gacggttgaa
1351 gtggctgatt atcttgaaat aaaggggatt tggaacctcc cagatatatg
1401 cgccattccc tgcttgagct gcagtgatgg gttcccctgt gcgtgaatcc
1451 atggttgtgg cagttgattg acagataata agaacacccg cattcaagat
1501 ctactctcct cctcctgttg cgtctcttcg cttccctgtg ctgtactttg
1551 attggaagct gagtacagtg gtccttcgag agtgatgaag atcgcatttt
1601 ttagggccca attctttaat gctgtgtttt tttcctcgtt gaggaattcc
1651 ttataactgc tgttgggacc aggattgcac aagaagattg tcggtattcc
1701 gcctttaatt tgaactggct taccgtattt tgtgttggac tgccagtctc
1751 tttgggcccc catgaactct ttaaagtgtt tgaggaaatg cgggtcgacg
1801 tcatcaatga cgttgtacca ggcgtcgtta ctgtatactt tgggactcag
1851 gtccagatgt ccgcacaaat agttatgtgg tcccaatgac ctagcccaca
1901 tcgtctttcc cgtacgacta tctccctcaa ttactatact ccgaggtcta
1951 aggggccgcg cagcggcatc gacaacgtta tccaacgccc aaacttgaag
2001 ttcttctgga acttgatcga acgaagaaaa agaaaaagga gaaacataag
2051 gagctggtgg ctcctgaaag atcctgtcta gatttgcatt taaattatga
2101 aattgtagta caaaatcttt aggagctagt tccttaatga ctctaagagc
2151 ctctgactta cttcccgcgt taagcgctgc ggcgtaagcg tcgttggctg
2201 tctgttgtcc tcctcttgct gatcttccat cgatctgaaa ctctccccac
2251 tcgagagtgt ccccgtcctt gtcgatgtag tccttgacat ctgagcttga
2301 tttagctccc tgaatgttcg gatggaaatg tgctgacctg gttggggata
2351 ccaggtcgaa gaatctgtta ttcgtgcaga tgagtttgcc ctcgaactgg
2401 atgagcacat ggagatgagg gctcccatct tcgtgtaact ctctgcagac
2451 tttgatgtat tttttattcg agggtgtgtt gatggcttga atttgggaaa
2501 gtgcttcctc tttagtgagt gagcactgtg gataagtgag gaaataattt
2551 ttggcttgta ttttaaaacg tttgggggga gccattgact ttggtcaatt
2601 ggagacaact gattggattt tactctggca attggagact ggagacaatt
2651 tatagtgtct ccaaatggca ttatcgtaat ttgagaaatc atttcaaaat
2701 cctcacgctc caaaaagcgg ccatccgtat aatatt