Sequence of DPV Tomato leaf curl China virus

Leaf curl China virus - OX2, complete sequence.

ACC No: JX972142

Dated: 2013-05-08 | Length: 2744 | CRC: -859984611

                
ID   JX972142; SV 1; circular; genomic DNA; STD; VRL; 2744 BP.
XX
AC   JX972142;
XX
DT   08-MAY-2013 (Rel. 116, Created)
DT   08-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Leaf curl China virus - OX2, complete sequence.
XX
KW   .
XX
OS   Leaf curl China virus - OX2
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2744
RA   Li Z., Qin B., Cai J.;
RT   "Molecular Identification of Geminiviruses Infecting Oxalis corniculata
RT   L.";
RL   Unpublished.
XX
RN   [2]
RP   1-2744
RA   Li Z., Qin B., Cai J.;
RT   ;
RL   Submitted (15-OCT-2012) to the INSDC.
RL   Institute of Plant Protection, Guangxi Academy of Agricultural Sciences,
RL   174 Daxue East Road, Nanning, Guangxi 530007, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2744
FT                   /organism="Leaf curl China virus - OX2"
FT                   /segment="DNA A"
FT                   /host="Oxalis corniculata"
FT                   /strain="OX2"
FT                   /mol_type="genomic DNA"
FT                   /country="China:Nanning"
FT                   /collected_by="Zhanbiao Li"
FT                   /identified_by="Zhanbiao Li"
FT                   /db_xref="taxon:1329381"
FT   gene            129. .479
FT                   /gene="AV2"
FT   CDS             129. .479
FT                   /codon_start=1
FT                   /gene="AV2"
FT                   /product="AV2 protein"
FT                   /note="coat protein"
FT                   /protein_id="AGK90093.1"
FT                   /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT                   ILVVRARDYVEASRRYSHFHSRIQGASPVELRQPLYQPCCCPHCPRHKQKEIMGQSAHV
FT                   SKAQDVQDVQKP"
FT   gene            289. .1062
FT                   /gene="AV1"
FT   CDS             289. .1062
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="AV1 protein"
FT                   /protein_id="AGK90094.1"
FT                   /translation="MSKRPADIVISTPASKVRRRLNFDSPYTSRAAAPTVLVTNKRKSW
FT                   VNRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGVGLTH
FT                   RVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPSDFQQVFNVYDNE
FT                   PSTATVKNDQRDRYQVIRRFQATVTGGQYAAKEQAIIRRFYRVNNYVVYNHQEAGKYEN
FT                   HTENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT   gene            complement(1059. .1463)
FT                   /gene="AC3"
FT   CDS             complement(1059. .1463)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="AC3 protein"
FT                   /protein_id="AGK90095.1"
FT                   /translation="MDSRTGELITATQAENGVFIWEITNPLYFKITELQNRPFLSNNDI
FT                   VKVRIQFNYNLRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLNNLGVISLNN
FT                   VIRAVNYVLWDALTQTTFVQSSHVIKFNLY"
FT   gene            complement(1204. .1611)
FT                   /gene="AC2"
FT   CDS             complement(1204. .1611)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="AC2 protein"
FT                   /protein_id="AGK90096.1"
FT                   /translation="MQSSSASPNQCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSSL
FT                   NCANHGFTHRGTHHCHSGREWRFYLGDNKSPVFQDNGTTKQALPVEQRHSEGQDPIQLQ
FT                   PEESTGDAPMFSGLPDMDELTPSDWSFLKSI"
FT   gene            complement(1511. .2596)
FT                   /gene="AC1"
FT   CDS             complement(1511. .2596)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="AC1 protein"
FT                   /protein_id="AGK90097.1"
FT                   /translation="MPQPKKFIINARNYFLTYPHCSLTKEETLSQILALATPINKLFIR
FT                   ICRELHEDGSPHLHVLIQFEGKYKCQNKRFFDLTSPTRSAHFHPNIQAAKSSTDVKSYM
FT                   DKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALSILREKAPKDYVLQYH
FT                   NLNNNLDKIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSARPLRPISIVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAIFVSITEPMY
FT                   SGTHQSPAQDSQEENNQETED"
FT   gene            complement(2146. .2439)
FT                   /gene="AC4"
FT   CDS             complement(2146. .2439)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="AC4 protein"
FT                   /protein_id="AGK90098.1"
FT                   /translation="MGLLTCMCSSNLKANTNAKTKDSSISHPQPGQHISIRTFRQLKAQ
FT                   QMSSPTWTKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSVY"
XX
SQ   Sequence 2744 BP; 726 A; 569 C; 611 G; 838 T; 0 other;

jx972142 Length: 2744  08-MAY-2013  Type: N  Check: 5968  ..

       1  accggaaggc cccccaattt tttaaagtgg tcccccccac tcagtaatgt
      51  ccaatcatga ccgcgcctca aagcttaatt attatgtggt cctgtatata
     101  acttcggccc caaggagtca ttttaaacat gtgggatcca ttgttaaacg
     151  agttcccaga aaccgtacat ggtttcaggt gtatgctcgc cattaagtat
     201  ttgcagttgg tagaaaatac atactctccg gatacgttag ggtacgattt
     251  aattcgtgat ttaattttag ttgttcgtgc tcgagattat gtcgaagcgt
     301  cccgcagata tagtcatttc cactcccgca tccaaggtgc gtcgccggtt
     351  gaacttcgac agcccttata ccagccgtgc tgctgccccc actgtcctcg
     401  tcacaaacaa aaggaaatca tgggtcaatc ggcccatgta tcgaaagccc
     451  aggatgtaca ggatgttcag aagccctgat gttccacgag gctgtgaggg
     501  tccgtgtaag gtccaatctt tcgatgcaaa gaatgatatc ggtcacatgg
     551  gtaaggtcat atgtctgtct gatgttacaa ggggagtggg tttgacccat
     601  cgtgttggta aacgtttctg cgttaagtca ctgtattttg ttggcaagat
     651  ttggatggat gaaaacatca aggtgaagaa ccacactaac accgttatgt
     701  tctggatagt gagggataga cgtcctagtg gcacccctag tgattttcag
     751  caggtcttta atgtttatga taacgagccg tctaccgcta ctgttaagaa
     801  cgatcagcgc gatcgttacc aagtgatacg caggtttcag gcaacggtca
     851  ctggtggaca atatgcagct aaggaacagg cgataattag aagattttat
     901  cgtgttaata attacgtagt gtataatcac caggaagctg ggaagtacga
     951  gaaccatact gaaaatgctc tgttgttgta tatggcatgt acgcatgcct
    1001  ctaatcccgt gtatgctact ttgaaagtga ggagttattt ctatgactca
    1051  gtcacgaatt aataaagatt aaattttatt acatgagaac tttgtacaaa
    1101  tgttgtttgc gttaatgcgt cccataatac ataattcact gctctaatta
    1151  cattattcaa actaattaca cccaaattat tgagaaactt caaaacttgt
    1201  gtcctaaata ctcttaagaa acgaccagtc tgaaggtgtg agttcgtcca
    1251  tatccggaag tccagaaaac attggtgcat ccccagtgct ttcctcaggt
    1301  tgtagttgaa ttggatcctg accttcacta tgtcgttgtt cgacaggaag
    1351  ggcctgtttt gtagttccgt tatcttgaaa tacaggggat ttgttatctc
    1401  ccagataaaa acgccattct ctgcctgagt ggcagtgatg agttcccctg
    1451  tgcgtgaatc catggttggc gcagttaagt gagctgaaat aagaacaacc
    1501  acagggaagg tcaatcctcc gtctcctggt tattttcttc ttggctatcc
    1551  tgtgctggac tttgatgggt acctgagtac attggttcgg tgatgctgac
    1601  gaagattgca ttctttattg cccacgactt taatgctgtg ttcttttcct
    1651  cgtctaggta ctctttatag ctggaattgg gccctggatt gcacaggaag
    1701  atagcgggaa tgccaccttt aatttgaacc ggctttccgt acttggtatt
    1751  tgattgccag tccctttggg cccccatgaa ttctttaaaa tgttttagat
    1801  agtgcggatc gacgtcatca atgacgttgt accaggcatc attattgtat
    1851  acctttggac ttaaatcaag atgaccacac aaataattat ggggtcctaa
    1901  tgacctggcc cacattgtct tccccgtccg gctatctcct tcgataacta
    1951  tacttatcgg tcttaatggc cgcgcagaac tgacaacgtt ctctgcagcc
    2001  cactcttcga gttcctccgg aactcgatca aacgaagaag aagaaaaagg
    2051  cgaaacataa acctccatcg gaggtgtaaa aatcttatct aaattattat
    2101  ttaaattatg atactgtaaa acataatctt taggagcttt ctcccttagt
    2151  atactgaggg ccgaagcttt ggaccctgaa ttgattgcct cggcatatgc
    2201  gtcgttggca gattggcaac ctcctctagc cgatcttcca tcgatctgga
    2251  aaactccatg atcaagcacg tctccgtctt tgtccatgta ggacttgaca
    2301  tctgttgagc ttttagctgc ctgaatgttc ggatggaaat gtgctgacct
    2351  ggttggggat gtgagatcga agaatctttt gttttggcat ttgtatttgc
    2401  cttcaaattg gatgagcaca tgcaggtgag gagacccatc ttcgtgtaac
    2451  tctctgcaga ttcttatgaa taatttatta ataggtgttg ctagggctaa
    2501  aatttgggaa agtgtttctt ctttggtcag ggagcagtgt ggatatgtga
    2551  ggaaataatt ccttgcattt attataaatt tttttggttg aggcatttga
    2601  cttggtcaaa cgggtcctct caaacttccc tatgcaatcg gggaatgggt
    2651  ccttatttat atgtgaggac ctaaatggca ctattgtaaa tagtttaaag
    2701  aaattcaaaa ttcaaaatcc aaaagcggcc atccgtataa tatt