Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate sx186 av2 protein (av2), av1 protein (av1), ac3 protein (ac3), ac2 protein (ac2), ac1 protein (ac1), and ac4 protein (ac4) genes, complete cds.
ACC No: JX997803
Dated: 2013-01-29 | Length: 2781 | CRC: -1209749891
ID JX997803; SV 1; linear; genomic DNA; STD; VRL; 2781 BP.
XX
AC JX997803;
XX
DT 29-JAN-2013 (Rel. 115, Created)
DT 29-JAN-2013 (Rel. 115, Last updated, Version 1)
XX
DE Tomato yellow leaf curl virus isolate sx186 av2 protein (av2), av1 protein
DE (av1), ac3 protein (ac3), ac2 protein (ac2), ac1 protein (ac1), and ac4
DE protein (ac4) genes, complete cds.
XX
KW .
XX
OS Tomato yellow leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Ruan T., Qing L.;
RT ;
RL Submitted (24-OCT-2012) to the INSDC.
RL Plant Pathology, College of Plant Protection, Tiansheng Road 2, Chongqing
RL 400716, China
XX
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus"
FT /host="hollyhock"
FT /isolate="sx186"
FT /mol_type="genomic DNA"
FT /country="China:Shanxi"
FT /collected_by="Tao Ruan"
FT /collection_date="18-Jul-2012"
FT /db_xref="taxon:10832"
FT gene 148. .498
FT /gene="av2"
FT CDS 148. .498
FT /codon_start=1
FT /gene="av2"
FT /product="av2 protein"
FT /protein_id="AGC96506.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 308. .1084
FT /gene="av1"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="av1"
FT /product="av1 protein"
FT /protein_id="AGC96507.1"
FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="ac3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="ac3"
FT /product="ac3 protein"
FT /protein_id="AGC96511.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNNDI
FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLYSLGVISINN
FT VIRAVDHVLYDVLDNTINVTATHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="ac2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="ac2"
FT /product="ac2 protein"
FT /protein_id="AGC96510.1"
FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYMGDKQSPLFQDNRTQSAAISNEQRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="ac1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="ac1"
FT /product="ac1 protein"
FT /protein_id="AGC96508.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYISPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="ac4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="ac4"
FT /product="ac4 protein"
FT /protein_id="AGC96509.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 760 A; 530 C; 609 G; 882 T; 0 other;
jx997803 Length: 2781 29-JAN-2013 Type: N Check: 3173 ..
1 accggatggc cgcgccttct ctttttatgt ggtccctacg agggttccac
51 atacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtagtctgtc ttgcaatatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt tgctgttaca tttattgtgt tatcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
1201 atataaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgttg ttcattagaa atggccgctg actgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccatataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaagattg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa tataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgctatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca ttgcaattca acattcaaaa ttcaaaaatc
2751 aaatcaataa agcggccatc cgtataatat t