Sequence of DPV Macroptilium yellow spot virus
Macroptilium yellow spot virus isolate BR:Oaf2:11 segment DNA-A, complete sequence.
ACC No: KC004114
Dated: 2013-01-23 | Length: 2650 | CRC: 1442863608
ID KC004114; SV 1; circular; genomic DNA; STD; VRL; 2650 BP. XX AC KC004114; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf2:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2650 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(PT 2):418-431(2013). XX RN [2] RP 1-2650 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2650 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Phaseolus vulgaris" FT /isolate="BR:Oaf2:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC66-1B" FT /db_xref="taxon:1129034" FT CDS 223. .978 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /protein_id="AFX60699.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(975. .1373) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /protein_id="AFX60700.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINNVEDPLHTMTRIY FT HVQIRFNHNLRKALALHKAYLNFQVWTISLRASGTTYLVRFKYLVMLYLERIGVISLNN FT VIRAVRFATDKSYVNYVLENHEIKFKFY" FT CDS complement(1120. .1509) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /protein_id="AFX60702.1" FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQQRRGSTSHNDQNIPRPDQVQPQPEESI FT GSPQGISQFPSLDNIPESFWDDIFS" FT CDS complement(1460. .2506) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /protein_id="AFX60701.1" FT /translation="MPLPKSFRINAKNYFLTYPQCSLTKEEALSQLLNLSVPTNKKFIK FT IARELHENGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV FT EKDGDTIDWGEFQVDGRSARGGCQTINDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANASRIFQKAPEPWVPPFHLSSFTNVPEEMQVWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAKFVFLN FT SPLYQGST" FT CDS complement(2092. .2355) FT /codon_start=1 FT /product="AC4" FT /protein_id="AFX60703.1" FT /translation="MKMGSLISTSSSSSKGNSSARIIDSSTWYPQPGQHISIRTFRELN FT QAPTSSPTSRRTETQSIGGNFRSTEEVLEEVARRLTTHMPRR" XX SQ Sequence 2650 BP; 684 A; 542 C; 611 G; 813 T; 0 other; kc004114 Length: 2650 23-JAN-2013 Type: N Check: 1559 .. 1 accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct 51 tttggaccga gtgtatttga attaaagtca ttgttatttg aattaaagtc 101 agttatttta tttggtccaa tgaatatgcg tctgactagc ttagataatg 151 acaacttggt ccccaagttg gtggctaacg ggtatatatg ttaagaataa 201 ctgactactt ctttaattca gaatggttaa gcgggacgcc ccatggcgcc 251 acatggcagg aacctcaaag gtttcccgca ataacaacta ttctcctcgt 301 ggaggtggag gtccaaaaaa caacagggcc tctgaatggg ttaataggcc 351 catgtacaga aagcccagga tatatcggat gtatagaacc cccgatgtgc 401 ctagggggtg tgaaggccca tgtaaggttc aatcgtttga acagcgtcac 451 gatatatccc atgttggtaa ggttatatgt atgtctgacg tgacaagagg 501 taatggtatt acccatcgtg taggaaaacg tttttgtgtt aagtctgtat 551 atattctagg taagatatgg atggacgaga acatcaagtt gaagaatcac 601 acgaacagtg tgatgttttg gttggtcaga gaccggagac cctatagctc 651 ccctatggac tttggccaag tgttcaacat gtttgacaat gagcccagta 701 ctgctacggt taagaacgat cttcgtgatc gttttcaagt tatgcatcga 751 ttctatgcca aagtcactgg tggacagtat gcgagcaacg agcaagcaat 801 tgtgaggcgt ttttggaagg tcaacaatca tgttgtctac aaccaccaag 851 aagcagggaa atacgagaat catacggaga acgcactact actgtatatg 901 gcatgtactc atgcctctaa ccccgtgtat gcaaccttaa aaattcggat 951 ctatttttac gattcgatac tcaattaata aaatttgaat tttatttcat 1001 gattctccag tacataattt acatatgatt tgtctgttgc aaatcgaaca 1051 gctctgatta cattgttaag cgaaataaca cctattcgtt ctaagtacaa 1101 catgactaag tatttaaatc taactaaata tgtcgtccca gaagctctca 1151 gggatattgt ccaaacttgg aaattgagat atgccttgtg gagagccaat 1201 gctttcctca ggttgtggtt gaacctgatc tggacgtggt atattctggt 1251 cattgtgtga agtggatcct ctacgttgtt gatcttgaaa taaaggggat 1301 ttgatatctc ccagatatag acgccactct ctgcctgatg tgcagtgatg 1351 agttcccctg tgcgtgaatc catgtcctct gcagttgata tggacgtata 1401 tggagcaccc gcaatctatg tcaattcgtc ttcgcctgat tgctctcttc 1451 ttggccgctc tatgttgaac cttgatagag gggggagttg aggaagacga 1501 atttcgcatt gtgtattgtc cactgtctaa gtgatgcgtt ttcctctttg 1551 tcgaggaatg atttatagct ggcgccctcg ccaggattgc aaagcacaat 1601 gcatgggatt ccacctttaa tttgaactgg cttcccgtat ttgcaatttg 1651 attgccagtc cttttgagca cctatcaatt ctttccagtg ctttaacttt 1701 agatattgcg gtgcgatgtc atctatcacg ttatactgca catcatttga 1751 atagaccttt gaattgaaat cgaggtgacc actcaagtaa ttatgggacc 1801 ccaatgcacg tgcccacatg gtcttgcccg ttcgagagtc accctcgatg 1851 attatactaa ttggtctctc cggccgcgca gcggcacctc tcccaaaata 1901 gtcatctgcc caaacttgca tctcctctgg gacgttagtg aacgaggaga 1951 ggtgaaacgg aggaacccac ggttctggag ccttctggaa aatgcgagaa 2001 gcatttgcca ccaagttatg atgttggaga aagaagtgct gtggttgctc 2051 ctctttaatt atttgcagtg cttcttctgc agaagaagcg tttaacgcct 2101 tggcatatgt gtcgttaatc gtctggcaac ctcctctagc acttcttccg 2151 tcgacctgaa attcccccca atcgattgtg tctccgtcct tctcgacgta 2201 ggacttgacg tcggagcttg atttagctcc ctgaatgttc ggatggaaat 2251 gtgctgacct ggttggggat accaggtcga agaatctatt attcttgcac 2301 tggaatttcc cttcgaactg gatgaggacg tggagatgag gctgcccatt 2351 ttcatgaagc tctctggcta ttttgatgaa tttcttatta gtgggaactg 2401 ataggtttaa taattgggac agtgcttcct cttttgtaag agagcactgt 2451 ggataagtaa ggaaataatt tttggcattt attctaaaag actttgggag 2501 tggcatattt tgtaaataag gcttggacac cgatcggggt ctctcaactt 2551 ctgtgatatg caattggtgt ctggtgtctt atttatacta gaaccctcaa 2601 tagaactttg gatctcaatc accaacgtgg cggccatccg atataatatt