Sequence of DPV Macroptilium yellow spot virus

Macroptilium yellow spot virus isolate BR:Oaf4:11 segment DNA-A, complete sequence.

ACC No: KC004119

Dated: 2013-01-23 | Length: 2650 | CRC: -1605466401

                
ID   KC004119; SV 1; circular; genomic DNA; STD; VRL; 2650 BP.
XX
AC   KC004119;
XX
DT   21-NOV-2012 (Rel. 114, Created)
DT   23-JAN-2013 (Rel. 115, Last updated, Version 2)
XX
DE   Macroptilium yellow spot virus isolate BR:Oaf4:11 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Macroptilium yellow spot virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
XX
RN   [1]
RP   1-2650
RX   PUBMED; 23136367.
RA   Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J.,
RA   Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT   "Synonymous site variation due to recombination explains higher genetic
RT   variability in begomovirus populations infecting non-cultivated hosts";
RL   J. Gen. Virol. 94(PT 2):418-431(2013).
XX
RN   [2]
RP   1-2650
RA   Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J.,
RA   Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT   ;
RL   Submitted (24-OCT-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 4.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2650
FT                   /organism="Macroptilium yellow spot virus"
FT                   /segment="DNA-A"
FT                   /host="Phaseolus vulgaris"
FT                   /isolate="BR:Oaf4:11"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2011"
FT                   /clone="RC71-2B"
FT                   /db_xref="taxon:1129034"
FT   CDS             223. .978
FT                   /codon_start=1
FT                   /product="CP"
FT                   /note="coat protein"
FT                   /protein_id="AFX60724.1"
FT                   /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY
FT                   RKPRIYRMYRTSDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSILN"
FT   CDS             complement(975. .1373)
FT                   /codon_start=1
FT                   /product="REN"
FT                   /note="replication-enhancer protein"
FT                   /protein_id="AFX60725.1"
FT                   /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINNVEDPLHTMTRIY
FT                   HVQIRFNHNLRKALALHKAYLNFQVWTISLRASGTTYLVRFKYLVMLYLERIGVISLNN
FT                   VIRAVRFATDKSYVNYVLENHEIKFKFY"
FT   CDS             complement(1120. .1509)
FT                   /codon_start=1
FT                   /product="TRAP"
FT                   /note="transactivating protein"
FT                   /protein_id="AFX60727.1"
FT                   /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG
FT                   HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQQRRGSTSHNDQNIPRPDQVQPQPEESI
FT                   GSPQGISQFPSLDNIPESFWDDIFS"
FT   CDS             complement(1460. .2506)
FT                   /codon_start=1
FT                   /product="REP"
FT                   /note="replication-associated protein"
FT                   /protein_id="AFX60726.1"
FT                   /translation="MPLPKSFRINAKNYFLTYPQCSLTKEEALSQLLNLSVPTNKKFIK
FT                   IARELHENGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIDWGEFQVDGRSARGGCQTINDTYAKALNASSAEEALQIIKEEQPQHFFLQHH
FT                   NLVANASRIFQKAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG
FT                   DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAKFVFLN
FT                   SPLYQGST"
FT   CDS             complement(2092. .2355)
FT                   /codon_start=1
FT                   /product="AC4"
FT                   /protein_id="AFX60728.1"
FT                   /translation="MKMGSLISTSSSSSKGNSSARITDSSTWYPQQGQHISIRTFRELN
FT                   QAPTSSPTSRRTETQSIGGNFRSTAEVLEEVARRLTTHMPRR"
XX
SQ   Sequence 2650 BP; 682 A; 541 C; 613 G; 814 T; 0 other;

kc004119 Length: 2650  23-JAN-2013  Type: N  Check: 3118  ..

       1  accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct
      51  tttggaccga gtgtatttga attaaagtca ttgttatttg aattaaagtc
     101  agttatttta tttggtccaa tgaatatgcg tctgactagc ttagataatg
     151  acaacttggt ccccaagttg gtggctaacg ggtatatatg ttaagaataa
     201  ctgactactt ctttaattca gaatggttaa gcgggacgcc ccatggcgcc
     251  acatggcagg aacctcaaag gtttcccgca ataacaacta ttctcctcgt
     301  ggaggtggag gtccaaaaaa caacagggcc tctgaatggg ttaataggcc
     351  catgtacaga aagcccagga tatatcggat gtatagaacc tccgatgtgc
     401  ctagggggtg tgaaggccca tgtaaggttc aatcgtttga acagcgtcac
     451  gatatatccc atgttggtaa ggttatatgt atgtctgacg tgacaagagg
     501  taatggtatt acccatcgtg taggaaaacg tttttgtgtt aagtctgtat
     551  atattctagg taagatatgg atggacgaga acatcaagtt gaagaatcac
     601  acgaacagtg tgatgttttg gttggtcaga gaccggagac cctatagctc
     651  ccctatggac tttggccaag tgttcaacat gtttgacaat gagcccagta
     701  ctgctacggt taagaacgat cttcgtgatc gttttcaagt tatgcatcga
     751  ttctatgcca aagtcactgg tggacagtat gcgagcaacg agcaagcaat
     801  tgtgaggcgt ttttggaagg tcaacaatca tgttgtctac aaccaccaag
     851  aagcagggaa atacgagaat catacggaga acgcactact actgtatatg
     901  gcatgtactc atgcctctaa ccccgtgtat gcaaccttaa aaattcggat
     951  ctatttttac gattcgatac tcaattaata aaatttgaat tttatttcat
    1001  gattctccag tacataattt acatatgatt tgtctgttgc aaatcgaaca
    1051  gctctgatta cattgttaag cgaaataaca cctattcgtt ctaagtacaa
    1101  catgactaag tatttaaatc taactaaata tgtcgtccca gaagctctca
    1151  gggatattgt ccaaacttgg aaattgagat atgccttgtg gagagccaat
    1201  gctttcctca ggttgtggtt gaacctgatc tggacgtggt atattctggt
    1251  cattgtgtga agtggatcct ctacgttgtt gatcttgaaa taaaggggat
    1301  ttgatatctc ccagatatag acgccactct ctgcctgatg tgcagtgatg
    1351  agttcccctg tgcgtgaatc catgtcctct gcagttgata tggacgtata
    1401  tggagcaccc gcaatctatg tcaattcgtc ttcgcctgat tgctctcttc
    1451  ttggccgctc tatgttgaac cttgatagag gggggagttg aggaagacga
    1501  atttcgcatt gtgtattgtc cactgtctaa gtgatgcgtt ttcctctttg
    1551  tcgaggaatg atttatagct ggcgccctcg ccaggattgc aaagcacaat
    1601  gcatgggatt ccacctttaa tttgaactgg cttcccgtat ttgcaatttg
    1651  attgccagtc cttttgagca cctatcaatt ctttccagtg ctttaacttt
    1701  agatattgcg gtgcgatgtc atctatcacg ttatactgca catcatttga
    1751  atagaccttt gaattgaaat cgaggtgacc actcaagtaa ttatgggacc
    1801  ccaatgcacg tgcccacatg gtcttgcccg ttcgagagtc accctcgatg
    1851  attatactaa ttggtctctc cggccgcgca gcggcacctc tcccaaaata
    1901  gtcatctgcc caagcttgca tctcctctgg gacgttagtg aacgaggaga
    1951  ggtgaaacgg aggaacccac ggttctggag ccttctggaa aatgcgagaa
    2001  gcatttgcca ccaagttatg atgttggaga aagaagtgct gtggttgctc
    2051  ctctttaatt atttgcagag cttcttctgc agaagaagcg tttaacgcct
    2101  tggcatatgt gtcgttaatc gtctggcaac ctcctctagc acttctgccg
    2151  tcgacctgaa attcccccca atcgattgtg tctccgtcct tctcgacgta
    2201  ggacttgacg tcggagcttg atttagctcc ctgaatgttc ggatggaaat
    2251  gtgctgacct tgttggggat accaggtcga agaatctgtt attcttgcac
    2301  tggaatttcc cttcgaactg gatgaggacg tggagatgag gctgcccatt
    2351  ttcatgaagc tctctggcta ttttgatgaa ttttttatta gtgggaactg
    2401  ataggtttaa taattgggac agtgcttcct cttttgtaag agagcactgt
    2451  ggataagtaa ggaaataatt tttggcattt attctaaaag actttgggag
    2501  tggcatattt tgtaaataag gcttggacac cgatcggggt ctctcaactt
    2551  ctgtgatatg caattggtgt ctggtgtctt atttatacta gaaccctcaa
    2601  tagaactttg gatctcaatc acccacgtgg cggccatccg atataatatt