Sequence of DPV Macroptilium yellow spot virus
Macroptilium yellow spot virus isolate BR:Oaf9:11 segment DNA-A, complete sequence.
ACC No: KC004123
Dated: 2013-01-23 | Length: 2625 | CRC: -1629878200
ID KC004123; SV 1; circular; genomic DNA; STD; VRL; 2625 BP.
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AC KC004123;
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DT 21-NOV-2012 (Rel. 114, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Macroptilium yellow spot virus isolate BR:Oaf9:11 segment DNA-A, complete
DE sequence.
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KW .
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OS Macroptilium yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2625
RX PUBMED; 23136367.
RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT "Synonymous site variation due to recombination explains higher genetic
RT variability in begomovirus populations infecting non-cultivated hosts";
RL J. Gen. Virol. 94(PT 2):418-431(2013).
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RN [2]
RP 1-2625
RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT ;
RL Submitted (24-OCT-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 4.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2625
FT /organism="Macroptilium yellow spot virus"
FT /segment="DNA-A"
FT /host="Phaseolus vulgaris"
FT /isolate="BR:Oaf9:11"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2011"
FT /clone="RC80-1"
FT /db_xref="taxon:1129034"
FT CDS 202. .957
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AFX60744.1"
FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY
FT RKPRIYRMYITPDVPRGCEGPCKVQSFEQRHDISHVGKVICVSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSILN"
FT CDS complement(954. .1352)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /protein_id="AFX60745.1"
FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINHVEDPLYTTTRIY
FT HVQIRFNHNLRRALALHKAYLNFQVWTTSLRASGTTYLVRFKYLVMLYLDRIGVISLNN
FT VIRAVRFATDKSYVNYVLENHEIKFKFY"
FT CDS complement(1099. .1488)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /protein_id="AFX60747.1"
FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG
FT HGFTHRGTHHCTSGREWRVYLGDIKSPLFQDQPRGGSTIHDNQDIPRPDQIQPQPQESI
FT GSPQGISKFPSLDDIPESFWDDIFS"
FT CDS complement(1439. .2485)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /protein_id="AFX60746.1"
FT /translation="MPQPRRFRIQSKNYFLTYPKCSISKEEALAQLLALETPTNKKYIR
FT VCRELHGNGEPHLHALLQFEGKFTCTNCRFFDLRHPSHSNVCHGKYESCKSSSDAKSYI
FT EKDGDYVEWGDFQIDGRSARGGQQTVNDTYAKALNASSAEEALQIIKEEQPQHFFLQHH
FT NLVANACRIFQKAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENTSLRQWTIHNAQFVFLN
FT SPLYQGST"
FT CDS complement(2071. .2328)
FT /codon_start=1
FT /product="AC4"
FT /protein_id="AFX60748.1"
FT /translation="MGSLISMLCCNSKVSSHARIADSSTCDIPVIQMFVMENTNHASHP
FT PTPNHISRRTEITSNGVIFRSTDDLLEEVNRQLTIHMQRH"
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SQ Sequence 2625 BP; 687 A; 543 C; 599 G; 796 T; 0 other;
kc004123 Length: 2625 23-JAN-2013 Type: N Check: 9962 ..
1 accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct
51 tttggaccga gtgaatttga attaaagtca gttattttgt tttgtccaat
101 gaatatgcgt ctgactagct tagataatga caacttggtc cccaagttgg
151 tggctaacgg gtataaatgt taagaataac tgactatttc tttaattcag
201 aatggttaag cgggacgccc catggcgcca catggcagga acctcaaagg
251 tttcccgcaa taacaactat tctcctcgtg gaggtggagg tccaaaaaac
301 aacagggcct ctgaatgggt taataggccc atgtacagaa agcccaggat
351 atatcggatg tacataaccc ctgatgtgcc tagagggtgt gaaggcccat
401 gtaaggttca gtcttttgaa cagcgtcacg atatatccca tgttggtaag
451 gttatatgtg tgtctgacgt gacaagaggt aatggtatta cccatcgtgt
501 aggaaaacgt ttttgtgtta agtctgtata tattctaggt aagatatgga
551 tggacgagaa catcaagttg aagaatcaca cgaacagtgt gatattctgg
601 ttggtcagag accggcgacc ctatagctcc ccgatggact ttggccaagt
651 gttcaacatg tttgacaatg agcccagtac tgctacggtt aagaacgatc
701 ttcgtgatcg ttttcaagtc atgcatcgat tctatgccaa agtcactggt
751 ggacagtatg cgagcaacga gcaagcaatt gtgaggcgtt tttggaaggt
801 caacaatcat gttgtctaca accaccaaga agcagggaaa tacgagaatc
851 atacggagaa cgcactacta ctgtatatgg catgtactca tgcctctaac
901 cccgtgtatg caaccttaaa aattcggatc tatttttacg attcgatact
951 caattaataa aatttgaatt ttatttcatg attctctagt acataattta
1001 catatgattt gtctgttgca aatcgaacag cacggattac attgttaagc
1051 gaaataacac ctattcggtc taagtacaac atgactaagt atttaaacct
1101 aactaaatat gtcgtcccag aagctctcag ggatgtcgtc cagacttgga
1151 aatttagata tgccttgtgg agagccaatg ctctcctgag gttgtggttg
1201 aatctgatct ggacgtggta tatcctggtt gtcgtgtata gtggatcctc
1251 cacgtggttg atcttgaaat aaaggggatt tgatatctcc cagatataca
1301 cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc
1351 atgtcctctg cagttgatat ggacgtatat ggagcacccg caatctatgt
1401 caattcgtct tctcctgatt gctctcttct tggccgctct atgttgaacc
1451 ttgatagagg ggggagttga ggaagacgaa ttgcgcattg tgtatcgtcc
1501 actgtctaag tgatgtgttt tcctctttgt cgaggaatga tttatagctg
1551 gcgccctcgc caggattgca aagcacaatg catgggattc cacctttaat
1601 ttgaactggc ttcccgtatt tgcaatttga ttgccagtct ttttgagcac
1651 ctatcaattc tttccagtgc tttaacttta gatattgcgg tgcgatgtca
1701 tctatcacgt tgtactgcac atcatttgaa tagacctttg aattgaaatc
1751 gaggtgacca cttaagtaat tatgggaccc caatgcacgt gcccacatgg
1801 tcttgcccgt tcgagagtca ccctcgatga ttatactaat tggtctttcc
1851 ggccgcgcag cggcacctct cccaaaataa tcatctgccc aagcttgcat
1901 ctcctctggg acgttagtga acgaggagag gtgaaacgga ggaacccacg
1951 gttctggagc cttttgaaaa atgcgacaag catttgccac caagttatga
2001 tgttggagaa agaagtgctg tggttgttcc tcctttatta tttgaagtgc
2051 ttcttcagca gaagaagcat ttaatgcctt tgcatatgta tcgttaactg
2101 tctgttgacc tcctcgagca gatcgtccgt cgatctgaaa atcaccccat
2151 tcgacgtaat ctccgtcctt ctcgatatat gatttggcgt cggaggatga
2201 cttgcatgat tcgtattttc catgacaaac atttgaatga ctgggatgtc
2251 gcaagtcgaa gaatctgcaa ttcgtgcatg tgaacttacc ttcgaattgc
2301 agcaaagcat ggagatgagg ctccccattt ccgtgtaatt ctctgcatac
2351 acggatatat tttttgttcg tgggtgtttc taaggctaga agttgagcaa
2401 gtgcctcttc tttggagata gagcacttgg gataagtaag gaaataattt
2451 ttggactgaa ttctaaaacg tctgggttgt ggcatatttg taaataaaaa
2501 gatgtctcta gttccgctcc gctcaaactt gctctatcta ttggagactg
2551 gagtcaattt atactagaac cctcaataga acttctaatc gtgttcgcac
2601 acgtggcggc catccgtata atatt