Sequence of DPV Macroptilium yellow spot virus
Macroptilium yellow spot virus isolate BR:Oaf9:11 segment DNA-A, complete sequence.
ACC No: KC004123
Dated: 2013-01-23 | Length: 2625 | CRC: -1629878200
ID KC004123; SV 1; circular; genomic DNA; STD; VRL; 2625 BP. XX AC KC004123; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf9:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2625 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(PT 2):418-431(2013). XX RN [2] RP 1-2625 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2625 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Phaseolus vulgaris" FT /isolate="BR:Oaf9:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC80-1" FT /db_xref="taxon:1129034" FT CDS 202. .957 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /protein_id="AFX60744.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY FT RKPRIYRMYITPDVPRGCEGPCKVQSFEQRHDISHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(954. .1352) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /protein_id="AFX60745.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINHVEDPLYTTTRIY FT HVQIRFNHNLRRALALHKAYLNFQVWTTSLRASGTTYLVRFKYLVMLYLDRIGVISLNN FT VIRAVRFATDKSYVNYVLENHEIKFKFY" FT CDS complement(1099. .1488) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /protein_id="AFX60747.1" FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRVYLGDIKSPLFQDQPRGGSTIHDNQDIPRPDQIQPQPQESI FT GSPQGISKFPSLDDIPESFWDDIFS" FT CDS complement(1439. .2485) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /protein_id="AFX60746.1" FT /translation="MPQPRRFRIQSKNYFLTYPKCSISKEEALAQLLALETPTNKKYIR FT VCRELHGNGEPHLHALLQFEGKFTCTNCRFFDLRHPSHSNVCHGKYESCKSSSDAKSYI FT EKDGDYVEWGDFQIDGRSARGGQQTVNDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANACRIFQKAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENTSLRQWTIHNAQFVFLN FT SPLYQGST" FT CDS complement(2071. .2328) FT /codon_start=1 FT /product="AC4" FT /protein_id="AFX60748.1" FT /translation="MGSLISMLCCNSKVSSHARIADSSTCDIPVIQMFVMENTNHASHP FT PTPNHISRRTEITSNGVIFRSTDDLLEEVNRQLTIHMQRH" XX SQ Sequence 2625 BP; 687 A; 543 C; 599 G; 796 T; 0 other; kc004123 Length: 2625 23-JAN-2013 Type: N Check: 9962 .. 1 accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct 51 tttggaccga gtgaatttga attaaagtca gttattttgt tttgtccaat 101 gaatatgcgt ctgactagct tagataatga caacttggtc cccaagttgg 151 tggctaacgg gtataaatgt taagaataac tgactatttc tttaattcag 201 aatggttaag cgggacgccc catggcgcca catggcagga acctcaaagg 251 tttcccgcaa taacaactat tctcctcgtg gaggtggagg tccaaaaaac 301 aacagggcct ctgaatgggt taataggccc atgtacagaa agcccaggat 351 atatcggatg tacataaccc ctgatgtgcc tagagggtgt gaaggcccat 401 gtaaggttca gtcttttgaa cagcgtcacg atatatccca tgttggtaag 451 gttatatgtg tgtctgacgt gacaagaggt aatggtatta cccatcgtgt 501 aggaaaacgt ttttgtgtta agtctgtata tattctaggt aagatatgga 551 tggacgagaa catcaagttg aagaatcaca cgaacagtgt gatattctgg 601 ttggtcagag accggcgacc ctatagctcc ccgatggact ttggccaagt 651 gttcaacatg tttgacaatg agcccagtac tgctacggtt aagaacgatc 701 ttcgtgatcg ttttcaagtc atgcatcgat tctatgccaa agtcactggt 751 ggacagtatg cgagcaacga gcaagcaatt gtgaggcgtt tttggaaggt 801 caacaatcat gttgtctaca accaccaaga agcagggaaa tacgagaatc 851 atacggagaa cgcactacta ctgtatatgg catgtactca tgcctctaac 901 cccgtgtatg caaccttaaa aattcggatc tatttttacg attcgatact 951 caattaataa aatttgaatt ttatttcatg attctctagt acataattta 1001 catatgattt gtctgttgca aatcgaacag cacggattac attgttaagc 1051 gaaataacac ctattcggtc taagtacaac atgactaagt atttaaacct 1101 aactaaatat gtcgtcccag aagctctcag ggatgtcgtc cagacttgga 1151 aatttagata tgccttgtgg agagccaatg ctctcctgag gttgtggttg 1201 aatctgatct ggacgtggta tatcctggtt gtcgtgtata gtggatcctc 1251 cacgtggttg atcttgaaat aaaggggatt tgatatctcc cagatataca 1301 cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc 1351 atgtcctctg cagttgatat ggacgtatat ggagcacccg caatctatgt 1401 caattcgtct tctcctgatt gctctcttct tggccgctct atgttgaacc 1451 ttgatagagg ggggagttga ggaagacgaa ttgcgcattg tgtatcgtcc 1501 actgtctaag tgatgtgttt tcctctttgt cgaggaatga tttatagctg 1551 gcgccctcgc caggattgca aagcacaatg catgggattc cacctttaat 1601 ttgaactggc ttcccgtatt tgcaatttga ttgccagtct ttttgagcac 1651 ctatcaattc tttccagtgc tttaacttta gatattgcgg tgcgatgtca 1701 tctatcacgt tgtactgcac atcatttgaa tagacctttg aattgaaatc 1751 gaggtgacca cttaagtaat tatgggaccc caatgcacgt gcccacatgg 1801 tcttgcccgt tcgagagtca ccctcgatga ttatactaat tggtctttcc 1851 ggccgcgcag cggcacctct cccaaaataa tcatctgccc aagcttgcat 1901 ctcctctggg acgttagtga acgaggagag gtgaaacgga ggaacccacg 1951 gttctggagc cttttgaaaa atgcgacaag catttgccac caagttatga 2001 tgttggagaa agaagtgctg tggttgttcc tcctttatta tttgaagtgc 2051 ttcttcagca gaagaagcat ttaatgcctt tgcatatgta tcgttaactg 2101 tctgttgacc tcctcgagca gatcgtccgt cgatctgaaa atcaccccat 2151 tcgacgtaat ctccgtcctt ctcgatatat gatttggcgt cggaggatga 2201 cttgcatgat tcgtattttc catgacaaac atttgaatga ctgggatgtc 2251 gcaagtcgaa gaatctgcaa ttcgtgcatg tgaacttacc ttcgaattgc 2301 agcaaagcat ggagatgagg ctccccattt ccgtgtaatt ctctgcatac 2351 acggatatat tttttgttcg tgggtgtttc taaggctaga agttgagcaa 2401 gtgcctcttc tttggagata gagcacttgg gataagtaag gaaataattt 2451 ttggactgaa ttctaaaacg tctgggttgt ggcatatttg taaataaaaa 2501 gatgtctcta gttccgctcc gctcaaactt gctctatcta ttggagactg 2551 gagtcaattt atactagaac cctcaataga acttctaatc gtgttcgcac 2601 acgtggcggc catccgtata atatt