Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:C6], complete genome.
ACC No: KC106652
Dated: 2013-06-27 | Length: 2779 | CRC: -403420988
ID KC106652; SV 1; circular; genomic DNA; STD; VRL; 2779 BP. XX AC KC106652; XX DT 27-JUN-2013 (Rel. 117, Created) DT 27-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:C6], complete DE genome. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2779 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT "Genomic diversity of the severe strain isolates of Tomato yellow leaf curl RT virus (TYLCV-IL) in Iran"; RL Unpublished. XX RN [2] RP 1-2779 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT ; RL Submitted (31-OCT-2012) to the INSDC. RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran XX CC ##Assembly-Data-START## CC Assembly Method :: Chromas v. Lite 2.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2779 FT /organism="Tomato yellow leaf curl virus - Il" FT /host="tomato" FT /isolate="TYLCV-IL[IR:Boj:C6]" FT /mol_type="genomic DNA" FT /country="Iran:Bojnurd" FT /collection_date="20-Aug-2011" FT /db_xref="taxon:66366" FT gene 146. .496 FT /gene="V2" FT CDS 146. .496 FT /codon_start=1 FT /gene="V2" FT /product="movement-like protein" FT /protein_id="AGO02144.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT SKAQNIQNVSEP" FT gene 306. .1082 FT /gene="V1" FT CDS 306. .1082 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /protein_id="AGO02145.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1079. .1483) FT /gene="C3" FT CDS complement(1079. .1483) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /protein_id="AGO02147.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLKNTINVTETHDIKYKFY" FT gene complement(1224. .1631) FT /gene="C2" FT CDS complement(1224. .1631) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /protein_id="AGO02148.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1561. .2613) FT /gene="C1" FT CDS complement(1561. .2613) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /protein_id="AGO02146.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHIDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKTWALKNATFVTLYEPLFA FT SINQGQTQDI" FT gene complement(2169. .2477) FT /gene="C4" FT CDS complement(2169. .2477) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /protein_id="AGO02149.1" FT /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2779 BP; 772 A; 528 C; 608 G; 871 T; 0 other; kc106652 Length: 2779 27-JUN-2013 Type: N Check: 3509 .. 1 accggatggc cgcgcttttt ttttatgtgg tccccacgag tgttccgcag 51 acgtcactgt caaccaatca aattgcatcc tcaaacgtta gataagtgtt 101 catttgtcta tatatacttg gtccccaagt attttgtatt gcaatatgtg 151 ggacccactt ctaaatgaat ttcctgaatc tgttcacgga tttcgttgta 201 tgttagctat taaatatttg cagtccgttg aggaaactta cgagcccaat 251 acattgggcc acgatttagt tagggatctt atatctgttg taagggcccg 301 tgactatgtc gaagcgacca ggcgatataa tcatttccac gcccgtctcg 351 aaggttcgcc gaaggctgaa cttcgacagc ccatacagca gccgtgctgc 401 tgtccccatt gtccaaggca caaacaagcg acgatcatgg acgtacaggc 451 ccatgtatcg aaagcccaga atatacagaa tgtatcggag ccctgatgtt 501 ccccgtggat gtgaaggccc atgtaaagtc cagtcttatg agcaacggga 551 tgatattaag catactggta ttgttcgttg tgttagtgat gttactcgtg 601 gatctggaat tactcacaga gtgggtaaga ggttctgtgt taaatcgata 651 tattttttag gtaaagtctg gatggatgaa aatatcaaga agcagaatca 701 cactaatcag gtcatgttct tcttagtccg tgatagaagg ccctatggaa 751 acagcccaat ggattttgga caggttttta atatgttcga taatgagccc 801 agtaccgcaa ccgtgaagaa tgatttgcgg gataggtttc aagtgatgag 851 gaaatttcat gctacagtta ttggtgggcc ctctggaatg aaggaacagg 901 cattagttaa gagatttttt aaaattaaca gtcatgtaac ttataatcat 951 caggaggcag ccaagtacga gaaccatact gaaaatgcct tgttattgta 1001 tatggcatgt acgcatgcct ctaatccagt gtatgcaact atgaaaatac 1051 gcatctattt ctatgattca atatcaaatt aataaaattt atattttata 1101 tcatgagttt ctgttacatt tattgtgttt ttaagtacat catacaatac 1151 atgatcaact gctctgatta cattgttaat ggaaattaca ccaagactat 1201 ctaaatactt aagaacttca tagctaaata ctcttaagaa acgaccagtc 1251 tgaggctgta atgtcgtcca aattcggaag ttgagaaaac atttgtgaat 1301 ccccattacc ttcctgatgt tgtggttgaa tcttatctga atggaaatga 1351 tgtcgtggtt cattagaaat ggcctctggc tgtgttctgt tatcttgaaa 1401 tagaggggat tgtttatctc ccagataaaa acgccattct ctgcttgagg 1451 agcagtgatg agttcccctg tgcgtgaatc catgattatt gcagttgagg 1501 tggaggtagt atgagcagcc acagtctagg tctacacgct tacgccttat 1551 tgttttcttc ttagatatct tgtgtttgac cttgattgat acttgcgaac 1601 agtggctcgt agagggtgac gaaggttgca ttcttgagag cccaagtttt 1651 caaggatatg tttttttctt cgtctagata ttccctatat gaggaggtag 1701 gtcctggatt gcagaggaag atagtgggaa ttcccccttt aatttgaatg 1751 ggctttccgt actttgtgtt gctttgccag tccctctggg cccccatgaa 1801 ttccttgaag tgctttaaat agtgcgggtc tacgtcatca atgacgttgt 1851 accacgcatc attactgtac acctttggac ttaggtctat atgtccacat 1901 aaataattat gtgggcctag agacctggcc cacattgttt tgcctgttct 1951 gctatcaccc tcgatgataa tactattagg tctccatggc cgcgcagcgg 2001 aagacatgac gttctctgac acccatactt caagttcatc tggaacttga 2051 ttaaaagatg aagataaaaa gggagaaata taaggagccg gaggctcttg 2101 aaaaatccta tctaaatttg aacttaaatt atgaaattgt aaaatataat 2151 cctttggggc cttctctttc aatatattga gggcctcgga ttttctgcct 2201 gaattgagtg cttcggcata tgcgtcgttg gcagattgct gacctcctct 2251 agctgatctg ccatcgattt ggaaaattcc aaaatcaatg aagtctccgt 2301 ctttctccac gtaggtcttg acatctgttg agctcttagc tgcctgaatg 2351 ttcggatgga aatgtgctga cctgcttgga gaggataaat cgaagaatcg 2401 ttggttctta cactggtact ttccttcgaa ctggatgaga acatggagat 2451 gaggagaccc atcttcatgt agttcatgcg caactcgtat gaatttcttg 2501 ttagttggtg tatttagggc aagtaattgg gaaagtgctt cttctttaga 2551 gagagaacaa ttaggataag tcaggaaata atttttggca tatattttaa 2601 atagacgagg catggtgaaa tgaatcggtg tccctcaaaa ctctatggca 2651 atcggtgtat ccggtgtctt acttatacct agacacccaa tggctatttg 2701 gtaatttcgt aaaagtaaat gtaattcaaa attcaaaatt caaaaatcaa 2751 atcattaaag cggccatccg tataatatt