Sequence of DPV Tomato yellow leaf curl virus

Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:C6], complete genome.

ACC No: KC106652

Dated: 2013-06-27 | Length: 2779 | CRC: -403420988

                
ID   KC106652; SV 1; circular; genomic DNA; STD; VRL; 2779 BP.
XX
AC   KC106652;
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DT   27-JUN-2013 (Rel. 117, Created)
DT   27-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:C6], complete
DE   genome.
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KW   .
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OS   Tomato yellow leaf curl virus - Il
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-2779
RA   Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT   "Genomic diversity of the severe strain isolates of Tomato yellow leaf curl
RT   virus (TYLCV-IL) in Iran";
RL   Unpublished.
XX
RN   [2]
RP   1-2779
RA   Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT   ;
RL   Submitted (31-OCT-2012) to the INSDC.
RL   Plant Pathology Department, Tarbiat Modares University, Tehran, Iran
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Chromas v. Lite 2.01
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2779
FT                   /organism="Tomato yellow leaf curl virus - Il"
FT                   /host="tomato"
FT                   /isolate="TYLCV-IL[IR:Boj:C6]"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Bojnurd"
FT                   /collection_date="20-Aug-2011"
FT                   /db_xref="taxon:66366"
FT   gene            146. .496
FT                   /gene="V2"
FT   CDS             146. .496
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="movement-like protein"
FT                   /protein_id="AGO02144.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL
FT                   ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   SKAQNIQNVSEP"
FT   gene            306. .1082
FT                   /gene="V1"
FT   CDS             306. .1082
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="coat protein"
FT                   /protein_id="AGO02145.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   gene            complement(1079. .1483)
FT                   /gene="C3"
FT   CDS             complement(1079. .1483)
FT                   /codon_start=1
FT                   /gene="C3"
FT                   /product="replication enhancer protein"
FT                   /protein_id="AGO02147.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT                   ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDSLGVISINN
FT                   VIRAVDHVLYDVLKNTINVTETHDIKYKFY"
FT   gene            complement(1224. .1631)
FT                   /gene="C2"
FT   CDS             complement(1224. .1631)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="transcription activator protein"
FT                   /protein_id="AGO02148.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL
FT                   NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT                   HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT   gene            complement(1561. .2613)
FT                   /gene="C1"
FT   CDS             complement(1561. .2613)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="replication-associated protein"
FT                   /protein_id="AGO02146.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA
FT                   HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR
FT                   TGKTMWARSLGPHNYLCGHIDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKTWALKNATFVTLYEPLFA
FT                   SINQGQTQDI"
FT   gene            complement(2169. .2477)
FT                   /gene="C4"
FT   CDS             complement(2169. .2477)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /protein_id="AGO02149.1"
FT                   /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSIYPLQAGQHISIRTFR
FT                   QLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY"
XX
SQ   Sequence 2779 BP; 772 A; 528 C; 608 G; 871 T; 0 other;

kc106652 Length: 2779  27-JUN-2013  Type: N  Check: 3509  ..

       1  accggatggc cgcgcttttt ttttatgtgg tccccacgag tgttccgcag
      51  acgtcactgt caaccaatca aattgcatcc tcaaacgtta gataagtgtt
     101  catttgtcta tatatacttg gtccccaagt attttgtatt gcaatatgtg
     151  ggacccactt ctaaatgaat ttcctgaatc tgttcacgga tttcgttgta
     201  tgttagctat taaatatttg cagtccgttg aggaaactta cgagcccaat
     251  acattgggcc acgatttagt tagggatctt atatctgttg taagggcccg
     301  tgactatgtc gaagcgacca ggcgatataa tcatttccac gcccgtctcg
     351  aaggttcgcc gaaggctgaa cttcgacagc ccatacagca gccgtgctgc
     401  tgtccccatt gtccaaggca caaacaagcg acgatcatgg acgtacaggc
     451  ccatgtatcg aaagcccaga atatacagaa tgtatcggag ccctgatgtt
     501  ccccgtggat gtgaaggccc atgtaaagtc cagtcttatg agcaacggga
     551  tgatattaag catactggta ttgttcgttg tgttagtgat gttactcgtg
     601  gatctggaat tactcacaga gtgggtaaga ggttctgtgt taaatcgata
     651  tattttttag gtaaagtctg gatggatgaa aatatcaaga agcagaatca
     701  cactaatcag gtcatgttct tcttagtccg tgatagaagg ccctatggaa
     751  acagcccaat ggattttgga caggttttta atatgttcga taatgagccc
     801  agtaccgcaa ccgtgaagaa tgatttgcgg gataggtttc aagtgatgag
     851  gaaatttcat gctacagtta ttggtgggcc ctctggaatg aaggaacagg
     901  cattagttaa gagatttttt aaaattaaca gtcatgtaac ttataatcat
     951  caggaggcag ccaagtacga gaaccatact gaaaatgcct tgttattgta
    1001  tatggcatgt acgcatgcct ctaatccagt gtatgcaact atgaaaatac
    1051  gcatctattt ctatgattca atatcaaatt aataaaattt atattttata
    1101  tcatgagttt ctgttacatt tattgtgttt ttaagtacat catacaatac
    1151  atgatcaact gctctgatta cattgttaat ggaaattaca ccaagactat
    1201  ctaaatactt aagaacttca tagctaaata ctcttaagaa acgaccagtc
    1251  tgaggctgta atgtcgtcca aattcggaag ttgagaaaac atttgtgaat
    1301  ccccattacc ttcctgatgt tgtggttgaa tcttatctga atggaaatga
    1351  tgtcgtggtt cattagaaat ggcctctggc tgtgttctgt tatcttgaaa
    1401  tagaggggat tgtttatctc ccagataaaa acgccattct ctgcttgagg
    1451  agcagtgatg agttcccctg tgcgtgaatc catgattatt gcagttgagg
    1501  tggaggtagt atgagcagcc acagtctagg tctacacgct tacgccttat
    1551  tgttttcttc ttagatatct tgtgtttgac cttgattgat acttgcgaac
    1601  agtggctcgt agagggtgac gaaggttgca ttcttgagag cccaagtttt
    1651  caaggatatg tttttttctt cgtctagata ttccctatat gaggaggtag
    1701  gtcctggatt gcagaggaag atagtgggaa ttcccccttt aatttgaatg
    1751  ggctttccgt actttgtgtt gctttgccag tccctctggg cccccatgaa
    1801  ttccttgaag tgctttaaat agtgcgggtc tacgtcatca atgacgttgt
    1851  accacgcatc attactgtac acctttggac ttaggtctat atgtccacat
    1901  aaataattat gtgggcctag agacctggcc cacattgttt tgcctgttct
    1951  gctatcaccc tcgatgataa tactattagg tctccatggc cgcgcagcgg
    2001  aagacatgac gttctctgac acccatactt caagttcatc tggaacttga
    2051  ttaaaagatg aagataaaaa gggagaaata taaggagccg gaggctcttg
    2101  aaaaatccta tctaaatttg aacttaaatt atgaaattgt aaaatataat
    2151  cctttggggc cttctctttc aatatattga gggcctcgga ttttctgcct
    2201  gaattgagtg cttcggcata tgcgtcgttg gcagattgct gacctcctct
    2251  agctgatctg ccatcgattt ggaaaattcc aaaatcaatg aagtctccgt
    2301  ctttctccac gtaggtcttg acatctgttg agctcttagc tgcctgaatg
    2351  ttcggatgga aatgtgctga cctgcttgga gaggataaat cgaagaatcg
    2401  ttggttctta cactggtact ttccttcgaa ctggatgaga acatggagat
    2451  gaggagaccc atcttcatgt agttcatgcg caactcgtat gaatttcttg
    2501  ttagttggtg tatttagggc aagtaattgg gaaagtgctt cttctttaga
    2551  gagagaacaa ttaggataag tcaggaaata atttttggca tatattttaa
    2601  atagacgagg catggtgaaa tgaatcggtg tccctcaaaa ctctatggca
    2651  atcggtgtat ccggtgtctt acttatacct agacacccaa tggctatttg
    2701  gtaatttcgt aaaagtaaat gtaattcaaa attcaaaatt caaaaatcaa
    2751  atcattaaag cggccatccg tataatatt