Sequence of DPV Turnip curly top virus

Turnip curly top virus isolate IR:Zaf:Z2-1:Tur:12, complete genome.

ACC No: KC108905

Dated: 2012-12-23 | Length: 2968 | CRC: 1608513377

                
ID   KC108905; SV 1; circular; genomic DNA; STD; VRL; 2968 BP.
XX
AC   KC108905;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE   Turnip curly top virus isolate IR:Zaf:Z2-1:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; ssDNA viruses; Geminiviridae; unclassified Geminiviridae.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2968
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0-0(2012).
XX
RN   [2]
RP   1-2968
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2968
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Zaf:Z2-1:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Zafarabad, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="Z2-1"
FT                   /db_xref="taxon:859650"
FT   CDS             233. .607
FT                   /codon_start=1
FT                   /product="V2"
FT                   /protein_id="AGA19569.1"
FT                   /translation="MIWKVNKDEKRVRAFRYKKRRFYSLSEYLLAPLGTHLCKARIFRD
FT                   DKHLVPAYTDEAYSFLVMLRDETRTPFEILKDEWNVEFKEIEVELSRLRFGPKDSFKEA
FT                   RGEESPVYESIHHQSSSSEA"
FT   CDS             462. .1292
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /protein_id="AGA19570.1"
FT                   /translation="MSGTWSLKRSRWNSPGYDLAPRTPSKRPAVRRALFTNQSTTSRVV
FT                   PRRRWSKVYTRGNKPYRSRRLKASDYQIYEDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KDFPSMYEVAENVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNM
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGKWKMYFINRDLMY"
FT   CDS             complement(1289. .1711)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /protein_id="AGA19571.1"
FT                   /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWSHQESGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS
FT                   LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY"
FT   CDS             complement(1416. .1844)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /protein_id="AGA19572.1"
FT                   /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGTHHASSIDDWNIHTPSTQPVPPQTNIMEPPGERVLQHQIAAPLQLQPTE
FT                   TTGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK"
FT   CDS             complement(1732. .2847)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /protein_id="AGA19573.1"
FT                   /translation="MPRTPRQYRIHAKNIFLTYPHCNLSKEEALLQLQAIECPSTKKFI
FT                   RISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRDRGSSRICHPNIQGAKSSSDVKSY
FT                   IEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLEANFYLEEGITPAGPSKYKVIP
FT                   TIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTRVYNDDVTYNVIDDVDPQYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGEGASYQTFLDKPENEALKS
FT                   WSLQNSIFTTIEEPLFNITSDQEVEDSTPSL"
FT   CDS             complement(2430. .2687)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /protein_id="AGA19574.1"
FT                   /translation="MGNLISMCLSSSKERSNSITPVISIYEIEVPAESVTQIFRELNPA
FT                   PTSSPISRRTEITQTGVNFRSIHDLHEEVNRRLMMHVQRH"
XX
SQ   Sequence 2968 BP; 777 A; 518 C; 750 G; 923 T; 0 other;

kc108905 Length: 2968  23-DEC-2012  Type: N  Check: 3847  ..

       1  accggatggc ccaaaaaaat ttttggcgcg tatctgatag cgatgtgcgc
      51  gtagtggaga aggcgcgcca aagttaaagt gataacgatt ggtcactgtc
     101  gggtggtcct aaagtgtttc cactatcgat aatgcgcatt agtgcgatta
     151  cacgtggcat tgtactatat gtctccgaag ctcagcttcg ggtataaata
     201  taggtttggg atagtattct atgtaattaa aaatgatttg gaaagtaaat
     251  aaagatgaaa aacgggttag ggcgtttagg tacaagaaaa gaaggtttta
     301  ttctttatcg gagtatttat tagccccatt gggtacccat ctctgtaagg
     351  ctcgtatatt tcgagacgat aagcacttgg ttccagctta taccgacgag
     401  gcgtatagtt tcttggttat gcttagagac gaaactcgta ctccgtttga
     451  gatattgaag gatgagtgga acgtggagtt taaagagatc gaggtggaac
     501  tctcccggtt acgatttggc cccaaggact ccttcaaaga ggcccgcggt
     551  gaggagagcc ctgtttacga atcaatccac caccagtcga gtagttccga
     601  ggcgtagatg gtccaaggta tatacgcgag gtaataaacc gtatagatct
     651  cgtagattaa aggctagtga ttatcagatc tacgaagata agatcggtgg
     701  agataatggg tggactgtga catttagtgg ggactgcact atgttgaata
     751  attatgttag aggtattggt agggaccagc gtgactcggt tatgactaag
     801  accgcacata tgcattttaa tggtgtttta atggctaatg atgcgttctg
     851  ggaagctcct aattatatga cgatgtatag ttggatcatt cttgataatg
     901  atcctggtgg gactttccca aagccgtctg acatatttga tatggagtac
     951  aaagattttc cttctatgta tgaggtagct gagaacgtga aatcacgttt
    1001  cattgtaaag aggaagacgg agcattatct acgctcgact ggtgttgcgt
    1051  ttggggagaa gcaaaattat aaagccccca atgttggccc ggttaagaag
    1101  ccgattcgta tgaagttccg taatatgtgg caaccgtcgg agtggaagga
    1151  tacagccgga ggtaaatatg aagacttgaa gaagggggcg ttgttgtatg
    1201  tttgtatttg tgataacaaa gctacccaat tctcgtttaa cttgaagggt
    1251  aaatggaaga tgtattttat aaatagggat ttgatgtatt aataaaactc
    1301  ttctttcatt gcgacgcgat actcttgatg tattacagac tcgacaaagt
    1351  tgaaatcatc aaataaaaca tgactaatac cattgataac aagattaagg
    1401  gatataatcc cgtaattatt taggtagaag agtaatctct tcaaaaaaat
    1451  cgtcgtaaat ctttgtccag tcaaattccg gtgacgaccc aataccgtga
    1501  attcgatcca agccatgtgt aatcccagtt gtttccgtag gttgtagttg
    1551  aagcggagct gcaatctgat gttgaagaac ccgctctcct ggtggctcca
    1601  tgatattagt ttgaggtgga acgggttggg tacttggtgt atgtatgttc
    1651  caatcgtcga ttgacgatgc gtgatgggtt cccctgtgcg taaatccctc
    1701  accacattca tgatgaattg tgaatttgca cttacaagga aggagtactg
    1751  tcttcgactt cttgatcact cgtgatattg aagagaggtt cctcgatcgt
    1801  tgtgaagatt gaattttgta aactccagga cttaagggct tcattctctg
    1851  gcttgtcgag gaatgtttga tatgaagctc cttcacctgg gttgcataat
    1901  atgatagagg ggatacctcc ttttataatg cgtggctttc cgtatttgag
    1951  gtttgtctgc cactcctttt gcgcaccaat gaggtgcttc cagtgtttca
    2001  tctttaggta ttgtgggtcc acgtcgtcta ttacgttgta agttacgtcg
    2051  tcgttgtata ctcttgtgga gaagtcaaga tgtccagtta tgtaattatg
    2101  actcccaagt gatcgagccc atagggtttt acctgttctt gatggtcctt
    2151  ctataatgat agatttaggt ctatcgattg ttggaattac cttatatttg
    2201  ctcggccccg caggggtgat gccctcttca agataaaaat tagcttcgag
    2251  ccagtcaaga atatcatctg tgagaacgaa ttgggtgtgg ttgtatttgg
    2301  gtatgtatcc tacaggggga gggttgaata tagctgctaa gttaggtttg
    2351  aggttatgga attgaaagat gtaatcttta gggagcttct ccctaatgac
    2401  agccagagcg gcttcagcgg tacctgagtt tagtgcctct gcacatgcat
    2451  cattagccgt ctgttgacct cctcgtgcag atcgtggatc gatctgaaat
    2501  tcaccccagt ctgtgtaatc tccgtccttc tcgatatagg acttgacgtc
    2551  ggagctggat ttagctccct gaatatttgg gtgacagatt ctgctggaac
    2601  ctctatctcg taaatcgaaa tgacgggggt tatagagttg gatctttcct
    2651  tcgaactgga taagcacatg gagatgaggt tccccattct cgtgtagttc
    2701  tcttgatatg cgaataaatt tcttcgtcga agggcactct atagcttgga
    2751  gttgtagcag agcttcttct ttagagagat tacagtgtgg gtatgtgagg
    2801  aagatgtttt tagcgtgaat gcgatattgc ctcggggtcc tcggcatttt
    2851  tatatttaga aaatgaatcg gggttacttc aaaactcata tgtatcgggg
    2901  ttactggggt tgtatatata gtgtgggtta aaggcttctt gatttgtttg
    2951  ggccatccgt ttaatatt