Sequence of DPV Turnip curly top virus
Turnip curly top virus isolate IR:Zaf:Z2-1:Tur:12, complete genome.
ACC No: KC108905
Dated: 2012-12-23 | Length: 2968 | CRC: 1608513377
ID KC108905; SV 1; circular; genomic DNA; STD; VRL; 2968 BP. XX AC KC108905; XX DT 23-DEC-2012 (Rel. 115, Created) DT 23-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Zaf:Z2-1:Tur:12, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; ssDNA viruses; Geminiviridae; unclassified Geminiviridae. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2968 RX PUBMED; 23225113. RA Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S., RA Varsani A.; RT "Genetic diversity and host range studies of turnip curly top virus"; RL Virus Genes 0:0-0(2012). XX RN [2] RP 1-2968 RA Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H., RA Kraberger S.; RT ; RL Submitted (29-OCT-2012) to the INSDC. RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave, RL Kerman, Kerman 7616914111, Iran XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN 5.2.6 v. 5.2.6 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2968 FT /organism="Turnip curly top virus" FT /host="Brassica rapa var. rapa" FT /isolate="IR:Zaf:Z2-1:Tur:12" FT /mol_type="genomic DNA" FT /country="Iran:Zafarabad, Shiraz, Fars" FT /collected_by="M. Kamali" FT /collection_date="2012" FT /clone="Z2-1" FT /db_xref="taxon:859650" FT CDS 233. .607 FT /codon_start=1 FT /product="V2" FT /protein_id="AGA19569.1" FT /translation="MIWKVNKDEKRVRAFRYKKRRFYSLSEYLLAPLGTHLCKARIFRD FT DKHLVPAYTDEAYSFLVMLRDETRTPFEILKDEWNVEFKEIEVELSRLRFGPKDSFKEA FT RGEESPVYESIHHQSSSSEA" FT CDS 462. .1292 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /protein_id="AGA19570.1" FT /translation="MSGTWSLKRSRWNSPGYDLAPRTPSKRPAVRRALFTNQSTTSRVV FT PRRRWSKVYTRGNKPYRSRRLKASDYQIYEDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY FT KDFPSMYEVAENVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNM FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGKWKMYFINRDLMY" FT CDS complement(1289. .1711) FT /codon_start=1 FT /product="C3" FT /protein_id="AGA19571.1" FT /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWSHQESGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS FT LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY" FT CDS complement(1416. .1844) FT /codon_start=1 FT /product="C2" FT /protein_id="AGA19572.1" FT /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH FT ECGEGFTHRGTHHASSIDDWNIHTPSTQPVPPQTNIMEPPGERVLQHQIAAPLQLQPTE FT TTGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK" FT CDS complement(1732. .2847) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /protein_id="AGA19573.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCNLSKEEALLQLQAIECPSTKKFI FT RISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRDRGSSRICHPNIQGAKSSSDVKSY FT IEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLEANFYLEEGITPAGPSKYKVIP FT TIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTRVYNDDVTYNVIDDVDPQYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGEGASYQTFLDKPENEALKS FT WSLQNSIFTTIEEPLFNITSDQEVEDSTPSL" FT CDS complement(2430. .2687) FT /codon_start=1 FT /product="C4" FT /protein_id="AGA19574.1" FT /translation="MGNLISMCLSSSKERSNSITPVISIYEIEVPAESVTQIFRELNPA FT PTSSPISRRTEITQTGVNFRSIHDLHEEVNRRLMMHVQRH" XX SQ Sequence 2968 BP; 777 A; 518 C; 750 G; 923 T; 0 other; kc108905 Length: 2968 23-DEC-2012 Type: N Check: 3847 .. 1 accggatggc ccaaaaaaat ttttggcgcg tatctgatag cgatgtgcgc 51 gtagtggaga aggcgcgcca aagttaaagt gataacgatt ggtcactgtc 101 gggtggtcct aaagtgtttc cactatcgat aatgcgcatt agtgcgatta 151 cacgtggcat tgtactatat gtctccgaag ctcagcttcg ggtataaata 201 taggtttggg atagtattct atgtaattaa aaatgatttg gaaagtaaat 251 aaagatgaaa aacgggttag ggcgtttagg tacaagaaaa gaaggtttta 301 ttctttatcg gagtatttat tagccccatt gggtacccat ctctgtaagg 351 ctcgtatatt tcgagacgat aagcacttgg ttccagctta taccgacgag 401 gcgtatagtt tcttggttat gcttagagac gaaactcgta ctccgtttga 451 gatattgaag gatgagtgga acgtggagtt taaagagatc gaggtggaac 501 tctcccggtt acgatttggc cccaaggact ccttcaaaga ggcccgcggt 551 gaggagagcc ctgtttacga atcaatccac caccagtcga gtagttccga 601 ggcgtagatg gtccaaggta tatacgcgag gtaataaacc gtatagatct 651 cgtagattaa aggctagtga ttatcagatc tacgaagata agatcggtgg 701 agataatggg tggactgtga catttagtgg ggactgcact atgttgaata 751 attatgttag aggtattggt agggaccagc gtgactcggt tatgactaag 801 accgcacata tgcattttaa tggtgtttta atggctaatg atgcgttctg 851 ggaagctcct aattatatga cgatgtatag ttggatcatt cttgataatg 901 atcctggtgg gactttccca aagccgtctg acatatttga tatggagtac 951 aaagattttc cttctatgta tgaggtagct gagaacgtga aatcacgttt 1001 cattgtaaag aggaagacgg agcattatct acgctcgact ggtgttgcgt 1051 ttggggagaa gcaaaattat aaagccccca atgttggccc ggttaagaag 1101 ccgattcgta tgaagttccg taatatgtgg caaccgtcgg agtggaagga 1151 tacagccgga ggtaaatatg aagacttgaa gaagggggcg ttgttgtatg 1201 tttgtatttg tgataacaaa gctacccaat tctcgtttaa cttgaagggt 1251 aaatggaaga tgtattttat aaatagggat ttgatgtatt aataaaactc 1301 ttctttcatt gcgacgcgat actcttgatg tattacagac tcgacaaagt 1351 tgaaatcatc aaataaaaca tgactaatac cattgataac aagattaagg 1401 gatataatcc cgtaattatt taggtagaag agtaatctct tcaaaaaaat 1451 cgtcgtaaat ctttgtccag tcaaattccg gtgacgaccc aataccgtga 1501 attcgatcca agccatgtgt aatcccagtt gtttccgtag gttgtagttg 1551 aagcggagct gcaatctgat gttgaagaac ccgctctcct ggtggctcca 1601 tgatattagt ttgaggtgga acgggttggg tacttggtgt atgtatgttc 1651 caatcgtcga ttgacgatgc gtgatgggtt cccctgtgcg taaatccctc 1701 accacattca tgatgaattg tgaatttgca cttacaagga aggagtactg 1751 tcttcgactt cttgatcact cgtgatattg aagagaggtt cctcgatcgt 1801 tgtgaagatt gaattttgta aactccagga cttaagggct tcattctctg 1851 gcttgtcgag gaatgtttga tatgaagctc cttcacctgg gttgcataat 1901 atgatagagg ggatacctcc ttttataatg cgtggctttc cgtatttgag 1951 gtttgtctgc cactcctttt gcgcaccaat gaggtgcttc cagtgtttca 2001 tctttaggta ttgtgggtcc acgtcgtcta ttacgttgta agttacgtcg 2051 tcgttgtata ctcttgtgga gaagtcaaga tgtccagtta tgtaattatg 2101 actcccaagt gatcgagccc atagggtttt acctgttctt gatggtcctt 2151 ctataatgat agatttaggt ctatcgattg ttggaattac cttatatttg 2201 ctcggccccg caggggtgat gccctcttca agataaaaat tagcttcgag 2251 ccagtcaaga atatcatctg tgagaacgaa ttgggtgtgg ttgtatttgg 2301 gtatgtatcc tacaggggga gggttgaata tagctgctaa gttaggtttg 2351 aggttatgga attgaaagat gtaatcttta gggagcttct ccctaatgac 2401 agccagagcg gcttcagcgg tacctgagtt tagtgcctct gcacatgcat 2451 cattagccgt ctgttgacct cctcgtgcag atcgtggatc gatctgaaat 2501 tcaccccagt ctgtgtaatc tccgtccttc tcgatatagg acttgacgtc 2551 ggagctggat ttagctccct gaatatttgg gtgacagatt ctgctggaac 2601 ctctatctcg taaatcgaaa tgacgggggt tatagagttg gatctttcct 2651 tcgaactgga taagcacatg gagatgaggt tccccattct cgtgtagttc 2701 tcttgatatg cgaataaatt tcttcgtcga agggcactct atagcttgga 2751 gttgtagcag agcttcttct ttagagagat tacagtgtgg gtatgtgagg 2801 aagatgtttt tagcgtgaat gcgatattgc ctcggggtcc tcggcatttt 2851 tatatttaga aaatgaatcg gggttacttc aaaactcata tgtatcgggg 2901 ttactggggt tgtatatata gtgtgggtta aaggcttctt gatttgtttg 2951 ggccatccgt ttaatatt