Sequence of DPV Sweet potato chlorotic stunt virus
Sweet potato chlorotic stunt virus isolate Jiangsu segment RNA2, complete sequence.
ACC No: KC146841
Dated: 2013-05-20 | Length: 8107 | CRC: -942691552
ID KC146841; SV 1; linear; genomic RNA; STD; VRL; 8107 BP. XX AC KC146841; XX DT 12-FEB-2013 (Rel. 115, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sweet potato chlorotic stunt virus isolate Jiangsu segment RNA2, complete DE sequence. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Crinivirus. XX RN [1] RC Publication Status: Online-Only RP 1-8107 RX PUBMED; 23661487. RA Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang Y., Wang S.; RT "Complete genome sequences of two sweet potato chlorotic stunt virus RT isolates from china"; RL Genome Announc 1(3):E00218-13(2013). XX RN [2] RP 1-8107 RA Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang S.; RT ; RL Submitted (07-NOV-2012) to the INSDC. RL Henan Academy of Agricultural Sciences, Institution of Plant Protection, RL Huayuan Road No. 116, Zhengzhou, Henan 450002, China XX CC GenBank Accession Numbers KC146840, KC146841 represent sequences CC from the 2 segments of Sweet potato chlorotic stunt virus isolate CC Jiangsu. XX FH Key Location/Qualifiers FH FT source 1. .8107 FT /organism="Sweet potato chlorotic stunt virus" FT /segment="RNA2" FT /host="Ipomoea batatas" FT /isolate="Jiangsu" FT /mol_type="genomic RNA" FT /country="China:Jiangsu" FT /collection_date="May-2009" FT /note="West African" FT /db_xref="taxon:81931" FT 5'UTR 1. .191 FT CDS 192. .329 FT /codon_start=1 FT /product="p5.2" FT /note="ORF4" FT /protein_id="AGE15450.1" FT /translation="MRYKNQKHKNITSSPREVSTNISSSAHQTEQNFLSNNRITPLGRE FT " FT CDS 333. .467 FT /codon_start=1 FT /product="p5" FT /note="ORF5" FT /protein_id="AGE15451.1" FT /translation="MFSVVSFKTTSPYKESYDPPVPPTHEFDSFCPSVVCMPLSYIFI" FT CDS 406. .534 FT /codon_start=1 FT /product="p5.1" FT /note="ORF6" FT /protein_id="AGE15452.1" FT /translation="MNLIVFAQVWYVCRCRIFLFDCALWCTVDFKEVRLVFTNLCM" FT CDS 879. .2543 FT /codon_start=1 FT /product="heat shock protein 70" FT /note="ORF7; may be required for virus movement and virion FT assembly" FT /protein_id="AGE15453.1" FT /translation="MEAKAGLDFGTTFSTISAYVGGTMKVLRINGSEFIPTCLSITKSG FT DVIVGGAAQVLDASQLPHCYFYDLKRWVGVDRLSFEEIKRRIAPQYSVKLEGNDVLITG FT IDKGCTCTYTVKQLILLYVDTLVRLFSNVEKLKILSLNVSVPADYKTKQRMFMKSVCES FT LGFPLRRIINEPSAAAIYSISKHPGFDYFLVYDFGGGTFDTSLIAKDGKFVTVADTLGD FT SFLGGRDIDKAILAFITRTNNLVSPLSADSLAAIKEEVNSTGKSSFNVLDTTGNIVFVK FT FSSEDLDKIVPKFTSKSLKILKAIADRNKITSGALFLVGGSSLLRKVQSDVSNFAKSIG FT LTPIIDKDLRSAVSYGCSMMHAQEDSGSMIYIDCNSHPLMDISLFANPRVIIRKPMSVP FT FSYKTTRTIQQHINTAINVYEGSSLFVLDNDWLVSANVNTQDFVQSGQDLSFVYKYNVD FT GILDLFVRNETTGVESLLPNSFALTEKVNKLDLNLTQLSSVDELATVVSILSHFDSNFS FT DLLKLVNTPSIFEASCSKFGDLRSLYDRLISFNTNFS" FT CDS 2565. .4121 FT /codon_start=1 FT /product="p60" FT /note="ORF8; putative movement protein" FT /protein_id="AGE15454.1" FT /translation="MAQPILHSDFVKETFKYAFKKNDVREYLQRLNEVMLSKCDIINGK FT SYKFNFQGKTYSLNSKYYVRGGDVYVNTDDPLEVLKLLSVYLYYVEPKYVELSPYSPES FT LFGNPNYMKAVKTWKPYYDKSMNEYLSDRSEVGCIYTMGDIGKHYPSVNETRKITLYRV FT CNSLGKLIDLKELSSGTLKAFEVKTSDVGQAVMTTTSSNALFAECVKVFKDYIVLNSTK FT AGREKIEVNRKFLNSFLRCLSPKEELGNLGENPLLIAWFMREFTDRTRTSSGFRDNYKA FT VVELSRPMLKFLKDVFLKNLSLDEDSLFITFPKNSVVEIVDQVIPLANFHRNQTLPTPM FT SNSCDLPREIDAIVSESIIKYLSKFIKTDGDLLLDAFLFVLGRSTTNQQRWTSGFEIDF FT KVIGSRIRFDSRDLWSYLNDAVKTKRPKFRTHNIIRQWANNRGDRARVMFKICGYKPGL FT FGTIPRIDEHMRFDFFKLMNLRMMSESEKVSYYTLRLMTESKSNNSDKDFCKLISWISA FT S" FT CDS 4103. .4324 FT /codon_start=1 FT /product="p8" FT /note="ORF9" FT /protein_id="AGE15455.1" FT /translation="MDFSELIEQHGIGKISNLVSRLVEIRRTGRGLTNLLLDIINDSFV FT HFDSKRSPCGFEKEDYILVLQIITLLRG" FT CDS 4352. .5125 FT /codon_start=1 FT /product="major coat protein" FT /note="CP; ORF10" FT /protein_id="AGE15456.1" FT /translation="MADSTKVEEKNFDSDSDLETNPKNKLQSEYASRRDVQTEGTASLG FT RRDMELTSGILTSDQLALARLGKIQVYSNSPDIMSKSQEDEFKRHMENFAKVVTGEATI FT TPEIFAAFYASLIQAWANQSTSEKNASNVNLENMFMVDGKEYSWKTHNFINHIQSNMPD FT VKNAIRKWARAHANDYKVLVGMGIVKPDYHLQAKQGVLPEYWHLATDFMRGNDLATTAD FT GLAATLMMKRNALCNKDNKNSVYNVTQLTGTGLHC" FT CDS 5128. .7182 FT /codon_start=1 FT /product="minor coat protein" FT /note="mCP; ORF11; structural protein; putatively required FT for movement and vector transmission" FT /protein_id="AGE15457.1" FT /translation="MEELDDIVSNTIVDNYSDDEQSVVARASGCELNQDYLLPYKDKEQ FT VDLSISYSSALRTKPVSVKLYFHIGKGFVVYSCKPVENFNQKVYESNLGAFFSSFTNLV FT TPRKPRGTNAFRFGYLRAGNDCFILVEGWRIVQIPNAEKIVGVTLRLTLDIDEVQFSKS FT GKLVGNIIDLPSCLNCTRPSDLFSNLKPSSVTLFSLSTKDSVNVQPSKTIPLSKIESAV FT DLDLKPFRNDGETNPDKNLTEIDTLKKTMGVEEDKEKIFRIYYSNFLDSGFNGSLSYQI FT MWPNISCDGMSVNHQFWLGDRDDMLEGGVQYIHTEPAHRLFFVHRRGDVSEYYKIDEAS FT VNKVLNSPPTELRFVITRGSDGKFVVSVNEIVFLTTVLPKVGSKVQIGWEIKIFKEKFK FT GFNRARLSTFETVPRESQVKSNGELVNLRKYDFEMTESDACGWNLKRKSGLRLRNIRNV FT TEMLAQDDVKEPPVDNSNMKPDRESIPEKKVELEELTERVDNQKEKFEEFALKAIVYQP FT ISKIDDERIFNSIIKHYVSKGLSSWQAELVVYQMGVSFCTSVNSCANSNLNLIVTKSDG FT SFLRVSKADHVMRLQLLCNKYCNVERTLLRNRSDKIFRLLKAGILTPPFRHARNRGLKS FT DMAHMACDFMDYSTIPLSDEENLALTSIQRYVLMKNKHRRSIVNVNQLY" FT CDS 7187. .7915 FT /codon_start=1 FT /product="p28" FT /note="ORF12" FT /protein_id="AGE15458.1" FT /translation="MSGWDDLPVNNSYAMSTNRSDDDIARICARTFNRAINLLTEYSQH FT TVPELRESRFELGCIRSLCENDDFSINLGADNSNLFQGLNKLGVRSDSLRVNSERFFPS FT ISSKVMTNVIDSISSVLEFVIDLNHSGFSTLWVGEIMTIYDVTSFEKLVDAIYRFLVYT FT YNFPEEVQFHMTLNLFNDDILKILNKAKRKLRPLTDSERIAMAKSITKGLHFEFHFTYR FT SLGLYLPKVTNSIMICNKNR" FT 3'UTR 7916. .8107 XX SQ Sequence 8107 BP; 2465 A; 1346 C; 1738 G; 2558 T; 0 other; kc146841 Length: 8107 20-MAY-2013 Type: N Check: 8597 .. 1 gaaatactac ccaggttttt ccatgagtaa tgcttttagc ttaagctcat 51 accattggtt gtcgtcatga ctcgcattta tgcgatgagt gactcaatct 101 cttcgggagt ctatgggact ttgttatctg agaactcgca ttagtgcgac 151 gtatcagatg caaagtgact gcccgtcata tctttatttt tatgcgttat 201 aaaaatcaaa aacacaaaaa tataacatct tctcctagag aagtatctac 251 taatatatct agctcagccc accaaacgga acaaaacttt ttgagcaata 301 ataggattac accattgggc cgggagtaat caatgttttc agtggtttca 351 ttcaaaacca cttcccctta taaggagtct tacgatcctc cagtaccccc 401 cacacatgaa tttgatagtt tttgcccaag tgtggtatgt atgccgttgt 451 cgtatatttt tatttgactg cgcattgtgg tgtactgtag attttaagga 501 ggttcgattg gttttcacta atctctgtat gtaaattatt tctgttagaa 551 tgtggagttt gttgtaaaac tgtctggttg taaataggta ccactactct 601 tttcatttga ttttctgtta aaataagatt ggtatgttct aaatctgtgt 651 aaacacacat ttagttttaa tcttattatt ctatgtttcc tgtgatgtag 701 tgttaactta aaatctgtag aaatacgtgt ttagttttga tcttattgtt 751 ctatgttacc tgtgatgtag tgctaactca aaagttcaca attgttctcc 801 ttcaatttgt ttattcttga ttgattgtat agtgttggta ttttgattta 851 ttcacttatt gatttatatt aatttgtcat ggaagctaag gctggtctcg 901 atttcggtac tactttcagt accatatcgg cgtatgttgg tggtactatg 951 aaagtccttc gaatcaacgg atcggaattt atcccaacgt gtttatctat 1001 tactaagagt ggtgatgtaa tagtcggtgg tgctgcacaa gtgttagatg 1051 cttctcaact accgcactgt tacttctacg atctaaaacg atgggttggg 1101 gttgataggc tgtcttttga agaaatcaaa cgtaggatag ctccccagta 1151 ttcggtcaaa ttggaaggta atgatgttct gataactggt attgataagg 1201 ggtgtacttg tacatatacg gttaaacaat taattcttct ttatgtagat 1251 actcttgtta ggttgttttc taacgttgag aagcttaaga ttttaagtct 1301 caatgtgtcc gtcccagcag actacaaaac aaaacaaaga atgtttatga 1351 agtctgtttg tgaatcgtta ggttttcctt tacgaagaat aataaacgag 1401 ccttctgctg ctgcgatata ctcaatatct aaacatcctg ggttcgacta 1451 tttcttagtt tatgatttcg gtggtgggac ttttgacact tctttgatag 1501 cgaaagatgg aaagttcgtc actgtggctg atacactggg agattcgttt 1551 ctcggaggta gagacataga taaggctatt ttggctttta tcacgcgtac 1601 gaacaatttg gtttctccgt tgtcagccga ctctcttgct gctattaaag 1651 aagaggtgaa ttcaactggg aagagttcct ttaatgtact tgatactacc 1701 ggcaatattg tttttgtaaa attttcgagt gaggatttag ataagatcgt 1751 gcccaagttc acgtctaaga gcctgaagat tttaaaggct attgctgata 1801 gaaataaaat cacttctggt gctctgtttc ttgttggcgg atcctcgtta 1851 ctgcggaagg tgcaatctga cgttagtaat tttgccaagt cgattggact 1901 gactcccata attgacaaag acttaaggtc tgccgtgtct tatggttgtt 1951 ctatgatgca tgcacaggaa gacagtggat ccatgatata tattgactgt 2001 aattcacatc cactaatgga catatcactt tttgccaatc cgagggtcat 2051 tattaggaaa ccgatgtccg tccccttttc ttacaagacc actcgaacaa 2101 ttcagcagca tataaacact gcgataaacg tgtatgaagg ttctagtttg 2151 tttgtactag ataatgattg gttagttagt gcaaatgtga atacacaaga 2201 ttttgttcaa tcagggcaag atttgtcttt tgtatataaa tacaatgttg 2251 atggaattct agatttattt gtgagaaatg agactactgg ggtcgagagt 2301 ttattaccga attcgtttgc attgactgaa aaagtaaata agttagattt 2351 gaatttaaca cagctgtcaa gcgttgacga actggcaact gttgtttcca 2401 ttctaagtca ttttgattcg aatttttctg atttgttgaa attggtaaat 2451 acaccatcta tttttgaagc atcttgtagc aagtttggag acctacgttc 2501 tctttacgat cgtttaattt ctttcaatac aaatttttct tgagatataa 2551 tttgcaggtt ttagatggct caacctatcc tccattccga ttttgtgaaa 2601 gaaactttta agtatgcttt caagaaaaat gacgttaggg agtaccttca 2651 acgccttaac gaagtaatgt tgagcaaatg tgacattatt aatggaaaga 2701 gttacaaatt taatttccaa ggtaagacgt attcgttgaa ctctaaatac 2751 tatgttagag gaggagacgt ttacgtcaac accgatgatc ccttagaagt 2801 gttgaaattg ttgtctgtat acttatatta tgtggagccg aagtatgttg 2851 aattatcacc ttacagtcct gagagtttat ttggtaatcc aaattacatg 2901 aaagctgtga agacttggaa accgtactat gataagtcta tgaacgagta 2951 tttgagtgac aggagtgagg ttggttgtat ttacaccatg ggcgatatcg 3001 gaaaacacta cccgtccgtg aatgaaactc gaaaaataac actgtacagg 3051 gtttgtaact ctttaggaaa attgatagat cttaaagagt tgagtagtgg 3101 gacgcttaaa gctttcgaag ttaagacttc agatgtcgga caggcggtca 3151 tgacgacaac gtccagtaac gctctcttcg ccgaatgcgt taaagtgttc 3201 aaggactaca ttgttttgaa ctcaactaaa gcagggagag aaaagataga 3251 ggtaaataga aaatttttaa attcttttct tcgttgttta tctcccaagg 3301 aagaactcgg aaacttagga gaaaatccat tgttgatagc ctggttcatg 3351 cgagaattca cggataggac gagaacaagt tcaggattta gagataatta 3401 taaggccgtc gttgaactta gtcgtcctat gctgaagttt ttgaaagacg 3451 tgtttctcaa gaatttaagt ttggacgaag attctctgtt tataacattt 3501 ccgaagaatt ctgtggtgga gattgtagat caagtgatac ccctagctaa 3551 tttccacagg aatcaaacct tacccacgcc catgagtaat tcctgtgacc 3601 taccacgtga aatagacgcc atcgtctcgg agtctataat aaagtacttg 3651 agtaagttta ttaaaacaga tggagactta ctacttgatg ctttcttatt 3701 cgtgttaggt cgaagtacta ctaatcagca gcgttggaca tccggattcg 3751 agatagattt caaagtcatc ggttcgagaa tacgttttga ctcacgagat 3801 ttatggtctt accttaatga tgcagtcaag acaaaacgtc cgaagtttcg 3851 aacgcacaat attattagac agtgggctaa caatcgcggt gacagagcgc 3901 gtgtaatgtt caagatatgt ggttacaaac caggtttgtt cggtaccatt 3951 ccaagaatag acgaacacat gagatttgat tttttcaaac tcatgaattt 4001 gaggatgatg tccgaatcag aaaaggtttc ttattacact cttcgtctta 4051 tgactgagag taaatcgaat aatagtgata aagatttttg taaattaatt 4101 tcatggattt cagcgagtta attgaacaac acggaatcgg gaagatttct 4151 aacttggtat cgcggttggt agagatcaga cgaaccggac gaggtctcac 4201 caatttgttg ttagatatta tcaatgacag ttttgtccac ttcgattcaa 4251 aaagatctcc gtgtggtttt gaaaaagagg attacatttt agtattacag 4301 atcattacgt tgttgcgtgg ttaagtaacc gaactaagca gtgagacgag 4351 tatggctgat agcactaaag tcgaagagaa gaactttgat tccgactcag 4401 atttggaaac taacccaaag aataaactac agtccgagta tgcgtctcgt 4451 cgtgacgtcc agactgaagg aacggctagt ttgggaagac gagatatgga 4501 gttaactagt ggtattctta cctcagacca gttagctctt gcaagattgg 4551 gtaagatcca agtatattcc aattctccag atattatgtc aaagagtcaa 4601 gaggatgagt ttaagcgtca tatggagaac ttcgcaaaag tcgtgactgg 4651 tgaggctaca ataacgccag aaatttttgc agcgttttat gcatcgttaa 4701 ttcaggcatg ggcaaatcag agtacgtccg aaaagaatgc ttcgaacgta 4751 aatcttgaga atatgtttat ggtcgacggg aaagagtata gttggaagac 4801 tcacaacttc ataaaccata ttcaatctaa catgccagat gttaagaacg 4851 ccataaggaa gtgggcaagg gctcatgcaa atgattacaa ggtccttgtt 4901 ggtatgggta ttgttaaacc cgattaccat ttgcaggcga aacagggtgt 4951 cttacctgaa tattggcatt tggccactga tttcatgaga ggtaatgatt 5001 tggcgacaac cgcagatggg ctggctgcga ctttgatgat gaaaaggaac 5051 gctctttgta acaaggataa taagaattct gtctacaacg ttactcagtt 5101 gactggaaca ggtcttcact gttgaagatg gaagagttag atgacattgt 5151 aagtaatacc attgtagata actattcaga tgacgaacaa tcggttgttg 5201 ctagggcaag tggttgtgaa ttaaatcaag actacttact accctataaa 5251 gataaagaac aagttgatct gtctatcagt tacagttcag cacttagaac 5301 aaaacctgta agtgttaaac tttatttcca tataggtaaa ggttttgtgg 5351 tttattcttg caaaccagtt gagaacttca atcaaaaagt ttacgagtca 5401 aatttgggcg cattcttctc gtctttcact aatttggtga ctcctcgaaa 5451 acctagagga actaatgctt tcagatttgg gtatttgcgt gctggtaatg 5501 attgtttcat cttggttgaa ggttggagga ttgttcaaat accgaatgct 5551 gagaaaattg ttggtgtgac attaagactg actcttgaca tcgatgaagt 5601 acagttctcg aaatctggta agttggtcgg caatataata gacttgccgt 5651 cgtgtttaaa ctgcactaga ccgagtgact tgttttccaa tttaaaacct 5701 agtagtgtta cattgttttc tttgtctact aaggacagtg tgaatgtgca 5751 accgtcgaaa acgatcccat tgtcaaaaat tgagagtgct gtggacttag 5801 atctaaaacc gtttcgtaat gatggtgaaa cgaatccgga taaaaatcta 5851 actgaaatag acactcttaa gaaaactatg ggtgtcgaag aggataagga 5901 gaaaatattc cgtatctact attcgaattt cttagacagt ggtttcaatg 5951 gttctctttc atatcaaata atgtggccga atatatcctg tgacgggatg 6001 agtgtaaacc accaattctg gttgggagac agagatgata tgttagaagg 6051 tggtgtgcaa tacattcata ctgaacccgc acatagatta ttcttcgtac 6101 acagaagagg agatgtttca gaatattata agattgatga agcttctgtt 6151 aataaggtct tgaattcccc tccaaccgaa cttagattcg ttataacaag 6201 aggatcggat ggcaaattcg tagtgagtgt aaacgaaata gtcttcttaa 6251 cgacagtctt accaaaagtt ggcagtaaag tacagatcgg atgggaaata 6301 aaaattttta aagaaaaatt taaaggattc aaccgagcaa gactttcaac 6351 ctttgaaacc gttcctcgtg agtctcaggt taaatcaaat ggtgagcttg 6401 tcaatctgag gaaatatgat ttcgagatga cagaatctga cgcatgtggt 6451 tggaatctga aaaggaaatc aggactgaga cttcggaaca ttaggaatgt 6501 aactgagatg ctggcgcagg acgatgtaaa agaaccacca gtagataaca 6551 gtaacatgaa acccgatcgc gaatccatac ctgagaaaaa ggtggagctg 6601 gaagaactaa ctgaaagggt tgacaatcag aaagaaaaat ttgaagaatt 6651 tgcgttaaaa gctatcgtgt accaaccgat atctaaaatt gatgatgaac 6701 gtatcttcaa ttcgatcatc aaacattatg tgtcgaaagg attgtcgagt 6751 tggcaagccg aactcgtagt atatcaaatg ggtgtttcat tttgtacgag 6801 tgttaatagt tgtgctaatt ccaacttgaa ccttatagta acgaaatcag 6851 atggatcttt cttaagggtg tcgaaggcag accatgttat gagactgcaa 6901 ttgttgtgta ataaatattg caatgttgaa cgtactctgt tgcggaatag 6951 aagtgataaa atatttagac ttctcaaggc tggtattctc acaccaccat 7001 ttagacatgc tcggaacaga ggtttgaaat ccgacatggc tcacatggcc 7051 tgcgacttta tggattattc tacgataccg ttaagtgatg aagagaattt 7101 ggctcttact tctattcaaa ggtacgtgtt aatgaaaaac aaacaccgca 7151 ggtctattgt taatgtgaat cagttgtatt agtgaaatgt ctggttggga 7201 tgatcttccg gttaacaact cttatgccat gagcacgaac agaagtgacg 7251 atgacatagc gaggatctgt gccagaacat tcaatcgggc aattaatctc 7301 ctgaccgaat actctcaaca tacagttcct gaacttcggg agagtaggtt 7351 tgagttgggt tgtatccgaa gtctttgtga aaacgatgac ttcagtatta 7401 accttggtgc agataatagc aatctgtttc aaggattaaa caagcttggg 7451 gtcagatcag actcattgag ggtgaacagt gagagattct tcccctcaat 7501 ttcgagtaag gtcatgacga atgtgatcga ttctatctcc tctgtcttgg 7551 agtttgtgat tgatttgaac cactctggat tctcaacctt gtgggttggt 7601 gaaataatga ctatttatga cgtaaccagt ttcgaaaaat tggttgacgc 7651 gatatatcgg tttttggtat acacgtacaa tttcccagaa gaggtacaat 7701 ttcacatgac attgaatttg ttcaatgatg atatattaaa gatacttaat 7751 aaagccaaaa gaaagcttcg accactcacc gacagtgaaa ggatcgcaat 7801 ggctaaaagt atcaccaaag gactccattt cgagttccat tttacatata 7851 ggtctttggg tttatatctt cccaaagtca ctaatagcat aatgatatgt 7901 aataaaaacc gttaaagata ttagggtatg tttgataaat gtttttatcc 7951 tagagtcgta taccgagagt atctcgagag tgtgctataa aatctcaaaa 8001 aatatatgta ttgtgttcat gattttattt aaagcgtgtg cataatcggt 8051 tttcctaaat catcgtttga tggaccttgg aaaacctagt atttaaataa 8101 ctaggcc