Sequence of DPV Grapevine virus satellite RNA

Grapevine satellite virus isolate AUD46129, complete sequence.

ACC No: KC149510

Dated: 2013-06-13 | Length: 1060 | CRC: -1567406604

                
ID   KC149510; SV 1; linear; genomic RNA; STD; VRL; 1060 BP.
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AC   KC149510;
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DT   13-JUN-2013 (Rel. 117, Created)
DT   13-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Grapevine satellite virus isolate AUD46129, complete sequence.
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KW   .
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OS   Grapevine satellite virus
OC   Viruses; Satellites; Satellite Viruses.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1060
RX   PUBMED; 23703624.
RA   Rwahnih M.A., Daubert S., Sudarshana M.R., Rowhani A.;
RT   "Gene from a novel plant virus satellite from grapevine identifies a viral
RT   satellite lineage";
RL   Virus Genes 0:0-0(2013).
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RN   [2]
RP   1-1060
RA   Al Rwahnih M., Sudarshana M., Daubert S., Rowhani A.;
RT   ;
RL   Submitted (08-NOV-2012) to the INSDC.
RL   Department of Plant Pathology, University of California-Davis, One Shields
RL   Ave, Davis, CA 95616, USA
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAstar v. 3.0.4
CC   Assembly Name         :: SeqMan NGen
CC   Sequencing Technology :: Illumina; Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1060
FT                   /organism="Grapevine satellite virus"
FT                   /host="Vitis sp. (grapevine)"
FT                   /isolate="AUD46129"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="01-Jan-2011"
FT                   /db_xref="taxon:1343493"
FT   5'UTR           1. .200
FT   CDS             201. .656
FT                   /codon_start=1
FT                   /product="ORF1"
FT                   /protein_id="AGN53195.1"
FT                   /translation="MVNRRPRNTTRRRGVPALREVNYATVNAGTQTAFARKDLQILAGC
FT                   GDRSFKLVGLALQVSSLSEPVIVQIHIFNEALKEIALCNRLVAQGNTWLRLRIPLSYKQ
FT                   WWSGETTQSQTLVRVDIIPTYKNQNTKVSFLLSLLCRLGTSEITAHP"
FT   CDS             653. .925
FT                   /codon_start=1
FT                   /product="ORF2"
FT                   /protein_id="AGN53196.1"
FT                   /translation="MKDLVFFMRKVNFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNK
FT                   CKEFLNRVTDPSAVSNKFSQLIAFSRLCDTNSIKNKIIVRNFDLM"
FT   3'UTR           926. .1060
XX
SQ   Sequence 1060 BP; 292 A; 208 C; 227 G; 333 T; 0 other;

kc149510 Length: 1060  13-JUN-2013  Type: N  Check: 9332  ..

       1  agtatttttc atgagcgtat ttttcatgag cgtattgtgc tagtaggttt
      51  cgaacaccac ataccaaatc atcttacaat ccctagcgct ggacacaccc
     101  ctcttcttac tgttcagttg ctatcttctt cttctaattc tctttttaat
     151  tattataata ttttggtatt gtcttaatat aaataaaaag cggaaatcag
     201  atggtcaatc gccgtcctag aaatactacg cgtcgtcgcg gggtcccagc
     251  tttgcgggaa gtgaattacg ctaccgtaaa cgcagggacg caaacagcat
     301  tcgccaggaa agaccttcaa atcttagcgg gctgtggaga ccgatcattt
     351  aaattggtcg gcttggcttt acaagtctcc tctctttcag aaccagttat
     401  cgttcagatt cacatcttca acgaggcact gaaagagatt gcgttgtgca
     451  accgtttggt cgcccaaggt aacacttggt tgcggttgcg catccccctt
     501  agttataagc agtggtggtc cggggagacc actcaaagtc agacacttgt
     551  ccgtgtcgat attataccta cttataaaaa tcaaaataca aaagtgtctt
     601  ttttattgag tcttttgtgt cgattgggca caagcgagat aacagcacac
     651  ccatgaaaga tttagtattt ttcatgagaa aggtaaactt cgtcgatgac
     701  gatgtttacg attttgtgat ggcccattat gtcagttggg gttggtacgg
     751  tggaaacatc ggtattacct tcgattttgg caataaatgt aaagaatttt
     801  taaatcgtgt tactgatccg tcagcggtaa gtaataaatt ctcacagttg
     851  atagcattta gccgtctctg tgacacgaat agtataaaga ataagattat
     901  tgtaagaaat tttgatttaa tgtgagtccg ggtgggcgta tgtcgtctta
     951  actcacccgt aaaggtgtct taacatagtt atgaataagt cctagttaga
    1001  gtctctccta aatccttaat tggagcgctg gagagcttaa ataagcgccg
    1051  tattgtgcta