Sequence of DPV Pepper yellow leaf curl China virus
Pepper yellow leaf curl China virus isolate YN57-18, complete genome.
ACC No: KC149941
Dated: 2013-02-07 | Length: 2748 | CRC: 2142485684
ID KC149941; SV 1; circular; genomic DNA; STD; VRL; 2748 BP.
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AC KC149941;
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DT 07-FEB-2013 (Rel. 115, Created)
DT 07-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE Pepper yellow leaf curl China virus isolate YN57-18, complete genome.
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KW .
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OS Pepper yellow leaf curl China virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2748
RA Ruan T., Qing L.;
RT ;
RL Submitted (07-NOV-2012) to the INSDC.
RL Plant Pathology, College of Plant Protection, Tiansheng Road 2, Chongqing
RL 400716, China
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2748
FT /organism="Pepper yellow leaf curl China virus"
FT /host="pepper"
FT /isolate="YN57-18"
FT /mol_type="genomic DNA"
FT /country="China"
FT /collected_by="Ling Qing"
FT /collection_date="20-Jul-2010"
FT /identified_by="Tao Ruan"
FT /db_xref="taxon:1288829"
FT gene 129. .467
FT /gene="AV2"
FT CDS 129. .467
FT /codon_start=1
FT /gene="AV2"
FT /product="AV2 protein"
FT /protein_id="AGE12523.1"
FT /translation="MWDPLLNEFPETVHGFRCMLSIKYLQLLSEGYSPDTVGFDLIREL
FT ISILRARNYVEASCRYRHFYSRVEGASSSELRQPLLNPCSCPHCPRHKISKLGEQAHES
FT QAQNVQDV"
FT gene 289. .1059
FT /gene="AV1"
FT CDS 289. .1059
FT /codon_start=1
FT /gene="AV1"
FT /product="AV1 protein"
FT /protein_id="AGE12524.1"
FT /translation="MSKRPADIVISTPGSKVRRRLNFDSPYSTRAAVPTVRVTKSRSWA
FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPYDFQQVFNVYDNEP
FT STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT gene complement(1056. .1460)
FT /gene="AC3"
FT CDS complement(1056. .1460)
FT /codon_start=1
FT /gene="AC3"
FT /product="AC3 protein"
FT /protein_id="AGE12528.1"
FT /translation="MDSRTGELLTAAQAENGVYIWTVKNPLYFKILNHVNRPFTMNMDI
FT ITIRIQFNYNLRRALGVHKCFLTYRIWTTLHPQIGLFLRVFKTQVLKYLNNLGVISINS
FT IIRAVNHVLWKKIEQTMYVDMDSEIKFNIY"
FT gene complement(1153. .1605)
FT /gene="AC2"
FT CDS complement(1153. .1605)
FT /codon_start=1
FT /gene="AC2"
FT /product="AC2 protein"
FT /protein_id="AGE12527.1"
FT /translation="MRSSSPSKDHCTQVPIKVQHREAKKRNRRRRVDLECGCSYFLSLN
FT CFNHGFAHRGTTHCSSSREWRLYLDGQKSPLFQDPQPRQPSIHDEHGHHNNKDPIQLQP
FT SESSGSAQVFSDIPNLDDLTPSDWSFLKGIQNPSPQVSKQSRCNFN"
FT gene complement(1502. .2593)
FT /gene="AC1"
FT CDS complement(1502. .2593)
FT /codon_start=1
FT /gene="AC1"
FT /product="AC1 protein"
FT /protein_id="AGE12525.1"
FT /translation="MPRLNSFQVKAKNIFLTYPKCPIPKEQALELIQQIACPSDKLFIR
FT VAQEKHKNGSLHLHVLIQFKGKAQFRNPRHFDITHPNTSTQYHPNFQGAKSSSDVKSYI
FT KKDGDYINWGSFQIDGRSARGGQQTANDAAAEALNTGSVEAAMAVIREKLPKDYIFQYH
FT NLKSNLDRIFTPPMEEYISPFSSSSFDQVPEELDEWAAHNVVNAAARPLRPQSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLQGPL
FT YSGSNQSTAQGSEETQQEEESRS"
FT gene complement(2179. .2436)
FT /gene="AC4"
FT CDS complement(2179. .2436)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AGE12526.1"
FT /translation="MGHCISMCSSNSKVKPSSVIPDISTSHTLIPPPNTTQTSRELSPA
FT RTSSPTSKRTVITSTGVVFRSMEDLHEEVNRQLMMLLQRP"
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SQ Sequence 2748 BP; 714 A; 555 C; 635 G; 844 T; 0 other;
kc149941 Length: 2748 07-FEB-2013 Type: N Check: 8340 ..
1 accggatggc cgcgcaattt ttttaaaatg gaccccgcat ttgcgtatgt
51 ccactcatgg ccgctcctca aagcttattt attaaatggt cccctataaa
101 acttaggccc caagtattta cgttaaacat gtgggatcca ttattaaacg
151 agttccccga gacggttcac gggtttcggt gcatgctttc aatcaaatat
201 cttcagttac tctctgaagg atactctcca gatacggttg gtttcgatct
251 aatacgtgag ttaatttcta ttttgcgtgc caggaattat gtcgaagcgt
301 cctgcagata tcgtcatttc tactcccggg tcgaaggtgc gtcgtcgtct
351 gaacttcgac agcccttact caacccgtgc agctgtcccc actgtccgcg
401 tcacaaaatc tcgaagttgg gcgaacaggc ccatgaatcg caagcccaga
451 atgtacagga tgtatagaag ccctgatgtc cctaagggat gtgaaggccc
501 atgtaaggtc caatcttttg atgcgaagaa cgatattggg catatgggta
551 aggtgatctg tttgtctgac gttacccgtg gtattggact tacccatcga
601 gttggcaaac gtttctgtgt caagtcactt tatttcgttg gcaagatatg
651 gatggatgaa aatattaagg ttaagaatca cacgaacacc gttttgttct
701 ggatagttag ggaccgacgt cctactggaa cgccttatga ttttcagcag
751 gtttttaatg tctatgataa tgagccttcc acggcaactg tgaaaaacga
801 ccagcgtgat cgtttccagg ttatcaggag gttccaggca acggtgaccg
851 gtggacaata tgcagcgaag gagcaggcga ttattagaaa gttttatcgt
901 gttaataatt atgtagtgta taatcaccag gaagctggga agtatgagaa
951 ccatactgaa aatgctttgt tattgtatat ggcatgtacc catgcctcta
1001 atcccgtgta tgctactttg aaagtcagga gttatttcta tgactcagtg
1051 acgaattaat aaatattaaa ttttatttct gaatccatgt ctacatacat
1101 agtttgttct atttttttcc ataatacatg atttacagct ctaataattg
1151 agttaattga aattacacct agattgttta gatacttgag gacttgggtt
1201 ttgaataccc ttaagaaaag accaatctga gggtgtaagg tcgtccagat
1251 tcggtatgtc agaaaacact tgtgcactcc cagagctctc cgaaggttgt
1301 agttgaattg gatccttatt gttatgatgt ccatgttcat cgtgaatgga
1351 cggttgacgt ggttgaggat cttgaaataa aggggatttt tgaccgtcca
1401 aatataaacg ccattctctg cttgagctgc agtgagtagt tcccctgtgc
1451 gcgaatccat ggttgaagca gtttaatgat agaaaataag aacacccgca
1501 ttcaagatcg actctcctcc tcctgttgcg tttcttcgct tccctgtgct
1551 gtactttgat tggaacctga gtacagtggt ccttggaggg tgacgaagat
1601 cgcattcttt agagcccaat tctttagtgc ggtgttcttt tcctcgtcga
1651 ggaattcttt ataactgctg ttgggaccag gattgcagag gaagattgtc
1701 ggtatcccgc ctttaatttg aactggcttc ccgtatttag tgtttgattg
1751 ccagtccctt tgggccccca tgaactcttt aaagtgcttg aggaagtgcg
1801 ggtcgacgtc atcaatgacg ttgaaccaag catcattact gtataccttt
1851 ggactcagat ctaaatgacc acacagatag ttgtgtgggc ctagtgacct
1901 agcccacatc gtcttcccgg ttctactatc tccctcaatg actatacttt
1951 gaggtcttaa aggccgcgca gcggcattga cgacgttatg ggccgcccat
2001 tcatcaagtt cttctggaac ttggtcaaaa gaagaagaag aaaaaggaga
2051 aatatattcc tccattggag gagtaaaaat cctatctaaa ttagatttta
2101 aattatgata ctgaaaaata taatctttcg ggagtttctc ccgaatgaca
2151 gccatagcgg cttcaacgga gcctgtgttt agggcctctg cagcagcatc
2201 attagctgtc tgttgacctc ctcgtgcaga tcttccatcg atctgaaaac
2251 taccccagtt gatgtaatca ccgtcctttt tgatgtagga cttgacgtcc
2301 gagctggact tagctccctg gaagtttggg tggtattggg tggaggtatt
2351 agggtgtgtg atgtcgaaat gtctgggatt acggaactgg gctttacctt
2401 tgaattggat gagcacatgg agatgcagtg acccattctt atgtttttct
2451 tgtgctactc gtatgaataa tttatcggat gggcatgcta tttgttggat
2501 aagttctagg gcttgctctt tcggaatggg acatttggga taagtgagaa
2551 agatattttt tgctttcact tggaatgaat taagacgagg cattttgacc
2601 gagtgaattg ggtgctctcc aaagttctat agaatggggg gctttgggtg
2651 cctatttata ccgagcaccc aaatggcaat attgtaattc ccaaacgaaa
2701 ttcaaaattc aaaattctaa atccaaaagc ggccatccgt ataatatt