Sequence of DPV Citrus tristeza virus

Citrus tristeza virus strain Rolandia clone 3 coat protein (p25) gene, complete cds.

ACC No: KC202897

Dated: 2013-01-28 | Length: 710 | CRC: 619960128

                
ID   KC202897; SV 1; linear; genomic RNA; STD; VRL; 710 BP.
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AC   KC202897;
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DT   23-JAN-2013 (Rel. 115, Created)
DT   28-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE   Citrus tristeza virus strain Rolandia clone 3 coat protein (p25) gene,
DE   complete cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-710
RA   Zanutto C.A., Corazza M.J., Nunes W.M.C., Muller G.W.;
RT   "Evaluation of the protective capacity offered by new mild Citrus tristeza
RT   virus (CTV) isolates selected for a preimmunization program";
RL   Unpublished.
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RN   [2]
RP   1-710
RA   Zanutto C.A., Corazza M.J., Nunes W.M.C., Muller G.W.;
RT   ;
RL   Submitted (13-NOV-2012) to the INSDC.
RL   Departamento de Agronomia, Universidade Estadual de Maringa, Av. Colombo,
RL   5790 - Bloco S09 Nba/Cti, Maringa, Parana 87020-390, Brazil
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .710
FT                   /organism="Citrus tristeza virus"
FT                   /host="Citrus sinensis"
FT                   /strain="Rolandia"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="2009"
FT                   /clone="3"
FT                   /db_xref="taxon:12162"
FT   gene            10. .672
FT                   /gene="p25"
FT   CDS             10. .672
FT                   /codon_start=1
FT                   /gene="p25"
FT                   /product="coat protein"
FT                   /protein_id="AGC54953.1"
FT                   /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSLNLHIDPTLIAMNDV
FT                   RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGVT
FT                   YTREGVEVELSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT                   LDAGIPAGYHYLCADFLTGAGLTDLECAVYLQAKEQLLKKRGADDVVITNVRQLGEI"
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SQ   Sequence 710 BP; 208 A; 135 C; 176 G; 190 T; 1 other;

kc202897 Length: 710  28-JAN-2013  Type: N  Check: 3474  ..

       1  agatctacca tggacgacga aacaaagaaa ttgaagaaca aaaacaagga
      51  aacgaaagaa ggcgacgatg ttgttgcagc tgagtcttct ttcggttcgt
     101  taaacttaca catcgatccg actctgatag cgatgaacga tgtgcgtcag
     151  ttgggtaccc aacagaatgc tgctttgaat agagatttgt ttcttacctt
     201  gaaagggaag tatcccaact tacctgacaa agataaagac tttcacatag
     251  ctatgatgtt atatcgttta gcagttaaga gttcatcatt acaaagcgac
     301  gatgatacca cgggtgtgac gtacactcgg gaaggtgttg aagtggagtt
     351  gtctgacaaa ctttggacag acgtcgtgtt taactctaag ggtattggta
     401  accgtactaa cgcccttcga gtctggggta gaactaacga tgccctttat
     451  ttggcttttt gtagacagaa ccgcaacttg agttatggtg gacgtccgtt
     501  agatgcagga attccagccg ggtatcacta cctgtgtgca gatttcttga
     551  ccggagctgg cttgactgat ttagaatgtg cagtgtactt acaagctaaa
     601  gagcaattat taaagaagcg aggggctgat gatgtcgtaa ttactaatgt
     651  caggcagctt ggggaaattt aacacacgtt gagcggccgc naattcaatc
     701  gaattcccgc