Sequence of DPV Tomato leaf deformation virus
Tomato leaf deformation virus isolate P92:2009 C1 (C1) gene, partial cds; and C4 (C4) gene, complete cds.
ACC No: KC237080
Dated: 2013-05-14 | Length: 921 | CRC: -1094148606
ID KC237080; SV 1; linear; genomic DNA; STD; VRL; 921 BP. XX AC KC237080; XX DT 14-MAY-2013 (Rel. 116, Created) DT 14-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato leaf deformation virus isolate P92:2009 C1 (C1) gene, partial cds; DE and C4 (C4) gene, complete cds. XX KW . XX OS Tomato leaf deformation virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-921 RX PUBMED; 23415858. RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B., RA Aragon-Caballero L., Navas-Castillo J., Moriones E.; RT "Fulfilling Koch's postulates confirms the monopartite nature of tomato RT leaf deformation virus: A begomovirus native to the New World"; RL Virus Res. 173(2):286-293(2013). XX RN [2] RP 1-921 RA Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B., RA Aragon-Caballero L., Navas-Castillo J., Moriones E.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Fruticultura Subtropical / Fitopatologia, IHSM La Mayora (IHSM-UMA-CSIC), RL Camino de La Mayora, Algarrobo-Costa, Malaga 29750, Spain XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .921 FT /organism="Tomato leaf deformation virus" FT /host="Solanum lycopersicum" FT /isolate="P92:2009" FT /mol_type="genomic DNA" FT /country="Peru:La Libertad, California" FT /collected_by="E. Moriones" FT /collection_date="2009" FT /db_xref="taxon:681518" FT gene complement(<1. .614) FT /gene="C1" FT CDS complement(<1. .614) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="Rep" FT /protein_id="AGL34882.1" FT /translation="MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIK FT IARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYV FT DKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFH FT NLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFG" FT gene complement(200. .457) FT /gene="C4" FT CDS complement(200. .457) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /protein_id="AGL34883.1" FT /translation="MGNIISTCYSSSKANSNVKIIDSSTWYPQPGQHISIRTFRELNPA FT PTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP" XX SQ Sequence 921 BP; 234 A; 174 C; 208 G; 305 T; 0 other; kc237080 Length: 921 14-MAY-2013 Type: N Check: 1046 .. 1 ccaaaataat catcagccca ttcttgcatc tcctccggga cgttagtgaa 51 ggaggagagt ggaaacggag gagaccatgg ctccggagcc ttcgaaaaaa 101 ttttatctaa attacaattt aaattatgaa attgaaataa atatttttca 151 gggagtttct cccttattat ttggagggct gcctctttgc taccgctatt 201 taaggcttct gcggcagcgt cgttagcagt ttggctgcct cctctagcac 251 ttctgccgtc gacttggaat tctccccatt caagtgtatc tccgtccttg 301 tcgacgtagg cgttgacgtc ggtgctggat ttagctccct gaacgttcgg 351 atggaaatgt gttgacctgg ttggggatac caggtcgaag aatctattat 401 ttttacattg gaatttgcct tggaactgga gtagcacgtg gagatgatgt 451 tgcccatctt cgtgaagttc ccttgcaatt ttgatatatt tcttatttgt 501 gggtgtctct agattttgca attgggaaag tgcttcttct ttggttaaat 551 tgcagtgggg atatgtaaga aaataatttt ttgcatttat cttaaaggcc 601 ttaggtgggg gcattttggt aataaatatt ttggacaccg attggtttgg 651 cttctaaaac ttatagcaat tggtgtactg gagtcttatt tatagtagga 701 gttcctaaag gatctagcaa cacgtggcgg ccatccgtat aatattaccg 751 gatggccgcg cgattttttt acccccttgt taagtttggg accacacata 801 tacggacaaa accttttgtc caatcataga gcgtctgacg agcttaatta 851 ttaaattcct ttagactgag tggtctataa agacccagac aaactgtaat 901 aattgatatc tttaactcaa a