Sequence of DPV Tomato leaf deformation virus

Tomato leaf deformation virus isolate P111:2009 C1 (C1) gene, partial cds; and C4 (C4) gene, complete cds.

ACC No: KC237083

Dated: 2013-05-14 | Length: 921 | CRC: -1708888953

                
ID   KC237083; SV 1; linear; genomic DNA; STD; VRL; 921 BP.
XX
AC   KC237083;
XX
DT   14-MAY-2013 (Rel. 116, Created)
DT   14-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Tomato leaf deformation virus isolate P111:2009 C1 (C1) gene, partial cds;
DE   and C4 (C4) gene, complete cds.
XX
KW   .
XX
OS   Tomato leaf deformation virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
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RN   [1]
RP   1-921
RX   PUBMED; 23415858.
RA   Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA   Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT   "Fulfilling Koch's postulates confirms the monopartite nature of tomato
RT   leaf deformation virus: A begomovirus native to the New World";
RL   Virus Res. 173(2):286-293(2013).
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RN   [2]
RP   1-921
RA   Sanchez-Campos S., Martinez-Ayala A., Marquez-Martin B.,
RA   Aragon-Caballero L., Navas-Castillo J., Moriones E.;
RT   ;
RL   Submitted (27-NOV-2012) to the INSDC.
RL   Fruticultura Subtropical / Fitopatologia, IHSM La Mayora (IHSM-UMA-CSIC),
RL   Camino de La Mayora, Algarrobo-Costa, Malaga 29750, Spain
XX
CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .921
FT                   /organism="Tomato leaf deformation virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="P111:2009"
FT                   /mol_type="genomic DNA"
FT                   /country="Peru:La Libertad, Paijan"
FT                   /collected_by="E. Moriones"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:681518"
FT   gene            complement(<1. .614)
FT                   /gene="C1"
FT   CDS             complement(<1. .614)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="C1"
FT                   /note="Rep"
FT                   /protein_id="AGL34888.1"
FT                   /translation="MPPPKAFKINAKNYFLTYPHCSLTKEEALSQLQNLETPTNKKYIK
FT                   IARELHENGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYV
FT                   DKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFH
FT                   NLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFG"
FT   gene            complement(200. .457)
FT                   /gene="C4"
FT   CDS             complement(200. .457)
FT                   /codon_start=1
FT                   /gene="C4"
FT                   /product="C4"
FT                   /protein_id="AGL34889.1"
FT                   /translation="MGNIISTCYSSSKANSNVKITDSSTWYPQPGQHISIRTFRELNPA
FT                   PTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP"
XX
SQ   Sequence 921 BP; 233 A; 173 C; 209 G; 306 T; 0 other;

kc237083 Length: 921  14-MAY-2013  Type: N  Check: 1064  ..

       1  ccaaaataat catcagccca ttcttgcatc tcctccggga cgttagtgaa
      51  ggaggagagt ggaaacggag gagaccatgg ctctggagcc ttcgaaaaaa
     101  ttttatctaa attacaattt aaattatgaa attgaaataa atatttttca
     151  gggagtttct cccttattat ttggagggct gcctctttgc taccgctatt
     201  taaggcttct gcggcagcgt cgttagcagt ttggctgcct cctctagcac
     251  ttctgccgtc gacttggaat tctccccatt caagtgtatc tccgtccttg
     301  tcgacgtagg cgttgacgtc ggtgctggat ttagctccct gaacgttcgg
     351  atggaaatgt gttgacctgg ttggggatac caggtcgaag aatctgttat
     401  ttttacattg gaatttgcct tggaactgga gtagcacgtg gagatgatgt
     451  tgcccatttt cgtgaagttc ccttgcaatt ttgatatatt tcttatttgt
     501  gggtgtctct agattttgca attgggaaag tgcttcttct ttggttaaac
     551  tgcagtgggg atatgtaaga aaataatttt ttgcatttat cttaaaggcc
     601  ttaggtgggg gcattttggt aataaatatt ttggacaccg attggtttgg
     651  cttctaaaac ttatagcaat cggtgtactg gagtcttatt tatagtagga
     701  gttcctaaag gatctagcaa cacgtggcgg ccatccgtat aatattaccg
     751  gatggccgcg cgattttttt acccccttgt taagtttggg accacacata
     801  tacggacaaa accttttgtc caatcataga gtgtctgacg agcttaatta
     851  ttaaattcct ttagactgag tggtctataa agacccagac aaactgtaat
     901  aattgatatc tttaactcaa a