Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus isolate SX-XA1, complete genome.
ACC No: KC312669
Dated: 2013-03-24 | Length: 2781 | CRC: -455213272
ID KC312669; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC312669; XX DT 24-MAR-2013 (Rel. 116, Created) DT 24-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate SX-XA1, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Xue D., Li J., Xu X.; RT "Phylogenetic analysis and application of multiplex PCR in detection of RT Tomato yellow leaf curl virus in China"; RL Unpublished. XX RN [2] RP 1-2781 RA Xue D., Li J., Xu X.; RT ; RL Submitted (07-DEC-2012) to the INSDC. RL College of Horticulture, Northeast Agricultural University, No. 59, MuCai RL Road, Harbin, Hei Longjiang 150030, China XX FH Key Location/Qualifiers FH FT source 1. .2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="SX-XA1" FT /mol_type="genomic DNA" FT /country="China:ShanXi, Xi'An" FT /collection_date="25-Sep-2012" FT /db_xref="taxon:10832" FT gene 148. .498 FT /gene="AV2" FT CDS 148. .498 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /protein_id="AGH27833.1" FT /translation="MWDPLLNEFPESGHGFRCMLAIKYVQPVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARVEGSPKAELRQPIQQPCCSPHCPRHKQATIMYVQAHV FT PEAQNIQNVSKP" FT gene 308. .1084 FT /gene="AV1" FT CDS 308. .1084 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /protein_id="AGH27834.1" FT /translation="MSKRPGDIIISTPASKVRPRLNFDSPFSSRAAVPIVQGTNKRRSC FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRADIKHTGIVRCVSDVTRGSGITD FT RVGKRFCVKSIYFLGKVWMDENVKKQNHTNQVMFFLVRDRRHYRNSPIDFGQVFNMFDN FT EPSTATVKNYLRDRFQVMRKFHATVIRGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHAYNPVYATMKIRIYFYDSISN" FT gene complement(1081. .1485) FT /gene="AC3" FT CDS complement(1081. .1485) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /protein_id="AGH27835.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNRLYFKITEHSQRPFLMNNDI FT ISIQIRFNQNIRKALGIHKCLLHFRIWTTLQPQTGRFLRVFRYQVLKYLYSLGVISINN FT VIRAVDHVLYDELANTINVTATHDIKYKFY" FT gene complement(1226. .1633) FT /gene="AC2" FT CDS complement(1226. .1633) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /protein_id="AGH27836.1" FT /translation="MQSSSPSTSHCSQVSINVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRAQPEAISNEQRHHFHSDKIQPE FT HQEGIGDSQMFTPLPNLDDITASDWSFLKSI" FT gene complement(1542. .2615) FT /gene="AC1" FT CDS complement(1542. .2615) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /protein_id="AGH27837.1" FT /translation="MPRLFKIYAKNYFLTYPNCSVSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFQGKYQCKNQRFFDLVSPNRSAHFHPNIQAPMCTADVKTYVEL FT GRDFIDFGVFQIDSRSARAGQQSANDAYAEALNSGSKSEALNILKEKARKDYILQFHNL FT SSNLDRLFSPPLEVYISPFLSSSFNQVPDELDEWVAENVVSSAARSWRPIGIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVHSNDVWYNVIDDVDPHYLKHFKEFMGAQSDWQS FT NTKYGKPIQIKGGVPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA FT SVNQRPTQDSQEETNKA" FT gene complement(2171. .2464) FT /gene="AC4" FT CDS complement(2171. .2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /protein_id="AGH27838.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYLQTGQHISIRTFRHQCAQ FT QMSRPTWSLAETSLILEFSKSIADQLEQVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 760 A; 538 C; 616 G; 867 T; 0 other; kc312669 Length: 2781 24-MAR-2013 Type: N Check: 6710 .. 1 accggatggc cgcgccttct ctttttatgt ggtccccacg agggttccac 51 atacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg 101 ttcatttgtc tttatatact tggtccccaa gtagtctgtc ttgcaatatg 151 tgggatccac ttctaaatga atttcctgaa tctggtcacg gatttcgttg 201 tatgttagct attaaatatg tgcagcccgt tgaggaaact tacgagccca 251 atacattggg ccacgattta ataagggatc ttatatctgt tgtaagggcc 301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcgt 351 cgaaggttcg cccaaggctg aacttcgaca gcccattcag cagccgtgct 401 gcagtcccca ttgtccaagg cacaaacaag cgacgatcat gtacgtacag 451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg 501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg 551 gctgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 601 tggatctgga attactgaca gagtgggtaa gaggttctgt gttaaatcga 651 tatatttttt aggtaaagtc tggatggatg aaaatgtcaa gaagcagaat 701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggcactatcg 751 aaacagccca atcgattttg gacaggtttt taatatgttc gataatgagc 801 ccagtaccgc aactgtgaag aattatttgc gggataggtt tcaagtgatg 851 aggaaatttc atgctacagt tattcgtggg ccctctggaa tgaaggaaca 901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc 951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg 1001 tatatggcat gtacgcatgc ctataatcca gtgtatgcaa ctatgaaaat 1051 acgcatttat ttctatgatt caatatcaaa ttaataaaat ttatatttta 1101 tatcatgagt tgctgttaca tttattgtgt ttgcaagttc atcatacaat 1151 acatgatcaa ctgctctgat tacattgtta attgaaatga caccaagact 1201 atataaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag 1251 tctgaggctg taatgtcgtc caaattcgga agtggagtaa acatttgtga 1301 atccccaatg ccttcctgat gttctggttg aatcttatct gaatggaaat 1351 gatgtcgttg ttcattagaa atggcctctg gctgtgctct gttatcttga 1401 aatagaggcg attgtttatc tcccagataa aaacgccatt ctctgcctga 1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt 1551 attggtttct tcttggctat cttgtgttgg acgttgattg acacttgcga 1601 acagtggctc gtagagggtg acgaagattg cattcttgag agcccaattt 1651 ttcaaggata tgtttttttc ttcatctaga tattccctat atgaggaggt 1701 aggtcctgga ttgcagagga agatagtggg aactccccct ttaatttgaa 1751 tgggcttccc gtactttgtg ttgctttgcc agtcgctctg ggcccccatg 1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt 1851 gtaccacaca tcattactgt gcacctttgg gcttaggtct agatgtccac 1901 ataaataatt atgtgggcct agcgacctgg cccacattgt tttgcctgtt 1951 ctgctatcac cctcaatgac aatacctatg ggtctccatg accgcgcagc 2001 ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt 2051 gattaaaaga agaagaaaga aatggagaaa tataaacttc taaaggagga 2101 ctaaaaagcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata 2151 gtcctttcgg gccttctctt ttaatatatt gagggcctcg gatttactgc 2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctgct 2251 ctagctgatc tgctatcgat ttggaaaact ccaaaatcaa tgaagtctcg 2301 gccaagctcc acgtaggtct tgacatctgc tgtgcacatt ggtgcctgaa 2351 tgttcggatg gaaatgtgct gacctgtttg gagataccag gtcgaagaac 2401 cgttggttct tacattggta tttgccttgg aattggataa gcacatggag 2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt 2501 tatttgttgg ggtttcgagg ttttttaatt gggaaagtgc ttcctcttta 2551 gagacagaac aattgggata tgttaggaaa taatttttgg catatatttt 2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg 2651 caatcggtgt atcggtgtct tacttatacc tggacaccga atggctattt 2701 ggtaattttg taaaagtaca ttgcaattca acattcaaaa ttcaaaaatc 2751 aaatcaataa agcggccatc cgtataatat t