Sequence of DPV Capraria yellow spot Yucatan virus
Capraria yellow spot Yucatan virus segment DNA-A, complete sequence.
ACC No: KC426927
Dated: 2013-05-08 | Length: 2624 | CRC: -1588731064
ID KC426927; SV 1; circular; genomic DNA; STD; VRL; 2624 BP.
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AC KC426927;
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DT 08-MAY-2013 (Rel. 116, Created)
DT 08-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Capraria yellow spot Yucatan virus segment DNA-A, complete sequence.
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KW .
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OS Capraria yellow spot Yucatan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2624
RA Torres-Herrera I., Cardenas-Conejo Y., Ambriz-Granados S.,
RA Mauricio-Castillo J.A., Moreno-Valenzuela O., Arguello-Astorga G.R.;
RT "New SLCV clade begomoviruses isolated from weeds in Yucatan, Mexico";
RL Unpublished.
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RN [2]
RP 1-2624
RA Torres-Herrera I., Cardenas-Conejo Y., Ambriz-Granados S.,
RA Mauricio-Castillo J.A., Moreno-Valenzuela O., Arguello-Astorga G.R.;
RT ;
RL Submitted (28-DEC-2012) to the INSDC.
RL Division de Biologia Molecular, Instituto Potosino de Investigacion
RL Cientifica y Tecnologica (IPICYT), Camino a la Presa San Jose 2055. Col.
RL Lomas 4 seccion, San Luis Potosi 78216, Mexico
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CC GenBank Accession Numbers KC426927, KC426928 represent sequences
CC from the 2 segments of Capraria yellow spot Yucatan virus.
CC ##Assembly-Data-START##
CC Assembly Method :: DNAStar v. edit seq, MegAlign
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2624
FT /organism="Capraria yellow spot Yucatan virus"
FT /segment="DNA-A"
FT /host="Capraria biflora"
FT /mol_type="genomic DNA"
FT /country="Mexico:Yucatan, Conkal"
FT /collection_date="2007"
FT /db_xref="taxon:1311277"
FT gene 202. .957
FT /gene="AV1"
FT CDS 202. .957
FT /codon_start=1
FT /gene="AV1"
FT /product="capsid protein"
FT /function="encapsulates the viral genome"
FT /note="CP"
FT /protein_id="AGK90269.1"
FT /translation="MPKRDAPWRLMAGTSKASRSANYTPRGVVGPKIDKAAAWVNRPMY
FT RKPRIYRTLRSPDVPRGCEGPCKVQSFEQRHDISHVGKVLCISDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT gene complement(954. .1352)
FT /gene="AC3"
FT CDS complement(954. .1352)
FT /codon_start=1
FT /gene="AC3"
FT /product="rep-interacting protein"
FT /function="enhances function of Rep protein"
FT /note="REn; AL3"
FT /protein_id="AGK90270.1"
FT /translation="MDSRTGESITADHAESSVFTWEGSNSLFSRIRFVENPMFTRTRIY
FT HIEVRFNHNVRRALGLHKAYFNFQIWTTSMTASGRTYLSRFKFLVMSYLDSLGAIGINN
FT VIRAVRFATDRHYVTDVLENHEIKYKFY"
FT gene complement(1099. .1488)
FT /gene="AC2"
FT CDS complement(1099. .1488)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator"
FT /function="activation of late genes"
FT /note="TraP; AL2; silencing-suppressor"
FT /protein_id="AGK90271.1"
FT /translation="MQNSSSSTPPSIKAQHRIAKKRAVRRRRIDLNCGCTIYLHINCAD
FT NGFTHRGEHHCGSCREFRFYLGGFQFPLFKDTVRREPHVHENKNIPHRSPVQPQREESV
FT GSPQSVLQLPNLDDFDDSFWTDIFK"
FT gene complement(1430. .2479)
FT /gene="AC1"
FT CDS complement(1430. .2479)
FT /codon_start=1
FT /gene="AC1"
FT /product="rolling-circle initiation protein"
FT /note="Rep"
FT /protein_id="AGK90272.1"
FT /translation="MPRNPNSFRLQANNIFLTYAQCDIPKDEALQMLQSLHWAIVKPLY
FT IRVSREEHSDGFPHLHCLLQLSGKSNIKDAGFFDLTHPRRSARFHPNIQAAKDTNAVRN
FT YITKEGDYCESGQYKVSGGSKANKDDVYHNVVNAASAGEALELIRAGDPKSFIVNYHNL
FT VPNLDRLFQKAPEPWVPPFRLSSFTNVPDEMQEWADEYFGRGSAARPIRAISIIVEGDS
FT RTGKTMWARALGRHNYLSGHLDFNSRVYSNDVEYNVIDDVAPHYLKLKHWKELIGAQMN
FT WQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKKENTSPRNWTLKNAKFIFLNAP
FT LYQSTAQDC"
FT gene complement(2071. .2424)
FT /gene="AC4"
FT CDS complement(2071. .2424)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AGK90273.1"
FT /translation="MPSVIYPRMKLFRCFNLCTGQSSSPYTYESQERNIQTGSPIYTVS
FT SNSPASPTSRMLDFSTLLTPEGLPVFTQISKLPKTPTPSEITSPKRVIIVNPGSIRCLG
FT VPKPIRTTSTTTS"
XX
SQ Sequence 2624 BP; 651 A; 582 C; 633 G; 758 T; 0 other;
kc426927 Length: 2624 08-MAY-2013 Type: N Check: 7193 ..
1 accggatggc cgcgattttt tggagtcctg tccgtaccca cttgctctcg
51 ctttattttc atcctgggcc cacagataag atgaaaatct cacggaccaa
101 tgacatgcct cctgtggagc ctagttatct attacttgct gactaagtgt
151 ggtccctgcc tattaaagca ctgacagttt catcttttgc tttaattcga
201 aatgcctaag cgcgatgccc catggcgctt aatggcgggg acctctaagg
251 cgtcccgctc tgccaactat acgcctcgtg gagttgttgg gcctaaaatt
301 gataaggccg ctgcttgggt taacaggccc atgtacagaa agcccaggat
351 atatcggact ttgagaagcc cagatgttcc cagagggtgt gaagggcctt
401 gtaaggtcca gtccttcgag cagcggcatg atatatctca tgttggcaag
451 gtgctgtgca tttctgacgt gacacgaggc aatggcatta cccatcgtgt
501 tggtaagcgt ttctgcgtca agtctgtgta catattgggc aagatatgga
551 tggacgagaa tatcaagttg aagaaccaca ccaacagcgt catgttctgg
601 ttggtccgtg accgtagacc ctacggcacc cccatggatt ttggccaggt
651 gttcaacatg ttcgacaacg aacccagtac tgccactgtg aagaacgatc
701 ttcgtgatcg ttttcaggtc atgcacaagt tctatgctaa ggtgactggt
751 ggacagtacg cgagcaatga gcaggcgttg gtcaaacggt tctggaaggt
801 gaacaactac gtcgtctaca accatcaaga ggcagggaaa tacgagaatc
851 atacggagaa tgctttgtta ttgtacatgg catgtactca tgcctctaat
901 cctgtatatg cgacattgaa aattcggatc tatttttatg attcgataac
951 aaattaataa aatttgtatt ttatttcatg attctcgagt acatctgtta
1001 cataatgtct gtctgttgcg aaacgaacag ctcggattac attgtttatt
1051 ccaatagctc ctaagctatc taagtaagac attacaagaa atttgaatct
1101 acttaaatat gtccgtccag aagctgtcat cgaagtcgtc cagatttgga
1151 agttgaagta cgctttgtgg agacccaacg ctctcctcac gttgtggttg
1201 aaccggactt cgatgtggta tattcttgtt ctcgtgaaca tggggttctc
1251 tacgaaccgt atccttgaaa agagggaatt ggaaccctcc caggtaaaaa
1301 cggaactctc tgcatgatcc gcagtgatgc tctccccggt gcgtgaatcc
1351 attgtctgcg cagttgatgt ggaggtatat ggtacatcca cagttcaaat
1401 ctatgcgtct tcgacgaaca gcccttttct tagcaatcct gtgctgtgct
1451 ttgatagagg ggggcgttga ggaagatgaa ttttgcattt tttaatgtcc
1501 agttcctcgg tgatgtattt tcctttttat cgaggaaatc tttatagctg
1551 gccccctctc ctggattgca cagcacgatt gatggtatgc cacctttaat
1601 ttgaactggt tttccgtatt tgcaatttgt ttgccagttc atctgggccc
1651 caatcaactc tttccagtgc tttagcttta ggtagtgcgg agctacgtca
1701 tcaatgacgt tatactccac atcatttgaa tagaccctag aattgaagtc
1751 taggtgacca ctcaagtaat tatgcctacc tagagcacga gcccacatcg
1801 tcttgccagt cctcgaatca ccttcgacga tgatactaat agctctaatt
1851 ggccgcgcag cggaacctct tccaaaatac tcatcagccc actcttgcat
1901 ctcgtctggc acgttagtga aggaagagag tcggaacgga ggaacccatg
1951 gttccggagc cttttgaaag aggcgatcga ggttaggcac taagttatgg
2001 tagttaacaa tgaacgattt tggatctccg gctcttataa gctcgagagc
2051 ctctccagca cttgctgcat ttacgacgtt gtggtagacg tcgtccttat
2101 tggctttgga acccccagac accttatact gcccggattc acaataatca
2151 ccctctttgg tgatgtaatt tctgacggcg ttggtgtctt tggcagcttg
2201 gatatttggg tgaaaacggg cagaccttct ggggtgagta aggtcgaaaa
2251 atccagcatc cttgatgttg gacttgccgg agagttggag gagacagtgt
2301 aaatggggga acccgtctga atgttcctct cttgagactc gtatgtataa
2351 gggcttgacg attgcccagt gcagagattg aagcatctga agagcttcat
2401 ccttgggtat atcacactgg gcatatgtta ggaagatatt attggcttga
2451 agacggaagg aattagggtt tctaggcatt attgtttggg actctaagct
2501 gggactccag ggatggctat ctcaaaaacc tattgtttgt ggagtcctgg
2551 agtcctatat atacataaag cctctaggac tctaagtaca cgtgggatca
2601 ctttcggcca tccgatataa tatt