Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate AG28 coat protein gene, complete cds.
ACC No: KC590498
Dated: 2013-03-19 | Length: 672 | CRC: 927979920
ID KC590498; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC590498; XX DT 19-MAR-2013 (Rel. 116, Created) DT 19-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate AG28 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Biswas K.K., Khatun D., Tarafdar A.; RT "Characterization of Citrus tristeza virus and determination of genetic RT variability in Northeast and South India"; RL Unpublished. XX RN [2] RP 1-672 RA Biswas K.K., Khatun D., Tarafdar A.; RT ; RL Submitted (08-FEB-2013) to the INSDC. RL Advanced Centre for Plant Virology, Division of Plant Pathology, Indian RL Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012, RL India XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus reticulata (Khasi mandarin)" FT /isolate="AG28" FT /mol_type="genomic RNA" FT /country="India:Dhuliajan, Tinsukia, Assam" FT /collected_by="K K Biswas" FT /collection_date="Apr-2010" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /note="ORF7" FT /protein_id="AGH18413.1" FT /translation="MDDETKKLKNKNKETKEGDDVAAAESSFRSMNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGIEVDLSDKLWTDVVFNSKGIGNRSNALRVWGRTNDALYLAFCRQIPNLSYGGRP FT LDAGIPAGYHYLCADFLTGGGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 194 A; 121 C; 174 G; 183 T; 0 other; kc590498 Length: 672 19-MAR-2013 Type: N Check: 3294 .. 1 atggacgacg agacaaagaa attgaagaac aaaaacaagg agacgaaaga 51 aggcgacgat gttgcagcag cagaatcttc ttttcgttcc atgaacttac 101 acatagatcc gactctgata gcgatgaacg atgtgcgtca gttgggaacc 151 caacagaacg ccgctttgaa cagagatttg tttcttactc tgaaagggaa 201 gtatcctaac ttgcctgaca aggataagga ctttcactta gctatgatgt 251 tatatcgttt agcggttaag agttcatcat tgcaaagtga tgacgacacc 301 acgggcataa catatactcg ggagggtatt gaagtggatt tgtctgacaa 351 gctttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtagta 401 atgcccttcg agtctggggt aggactaacg atgcccttta tttagctttc 451 tgtagacaga ttcccaattt gagttatggt ggacgtccgc tagatgcagg 501 gattccggct ggatatcatt acctatgtgc agatttcttg accggaggtg 551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa ggaacaattg 601 ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga