Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate TP1 coat protein gene, complete cds.
ACC No: KC590499
Dated: 2013-03-19 | Length: 672 | CRC: -1135702982
ID KC590499; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC590499; XX DT 19-MAR-2013 (Rel. 116, Created) DT 19-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate TP1 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Tarafdar A., Khatun D., Biswas K.K.; RT "Characterization of Citrus tristeza virus and determination of genetic RT variability in Northeast and South India"; RL Unpublished. XX RN [2] RP 1-672 RA Tarafdar A., Khatun D., Biswas K.K.; RT ; RL Submitted (08-FEB-2013) to the INSDC. RL Advanced Centre for Plant Virology, Division of Plant Pathology, Indian RL Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012, RL India XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus sinensis (sweet orange)" FT /isolate="TP1" FT /mol_type="genomic RNA" FT /country="India:Tirupati" FT /collected_by="K K Biswas" FT /collection_date="Oct-2010" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /note="ORF7" FT /protein_id="AGH18414.1" FT /translation="MDDETKKLKNKNKETREGDDVVAAESSFGSVNLHIDPTLITMNDV FT RQLGTQQNAALDRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 195 A; 124 C; 171 G; 182 T; 0 other; kc590499 Length: 672 19-MAR-2013 Type: N Check: 2934 .. 1 atggacgacg aaacaaaaaa attgaagaac aaaaacaagg aaacgagaga 51 aggcgacgat gtcgtagctg ccgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgggcacc 151 caacagaacg ctgctttgga cagagactta ttccttactt tgaaagggaa 201 gtatcctaac ttacctgata aagataagga ctttcacata gctatgatgt 251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc 301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgataa 351 actttggact gacgtcgtgt ttaactctaa gggtattggt aatcgtacta 401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt 451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg 501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg 551 gtttgactga cttagaatgt gctgtgtaca tacaagctaa agaacaatta 601 ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga