Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate TP4 coat protein gene, complete cds.
ACC No: KC590502
Dated: 2013-03-19 | Length: 672 | CRC: 1451873293
ID KC590502; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC590502; XX DT 19-MAR-2013 (Rel. 116, Created) DT 19-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate TP4 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Tarafdar A., Khatun D., Biswas K.K.; RT "Characterization of Citrus tristeza virus and determination of genetic RT variability in Northeast and South India"; RL Unpublished. XX RN [2] RP 1-672 RA Tarafdar A., Khatun D., Biswas K.K.; RT ; RL Submitted (08-FEB-2013) to the INSDC. RL Advanced Centre for Plant Virology, Division of Plant Pathology, Indian RL Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012, RL India XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus aurantifolia (Kagzi lime)" FT /isolate="TP4" FT /mol_type="genomic RNA" FT /country="India:Tirupati" FT /collected_by="K K Biswas" FT /collection_date="Oct-2010" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /note="ORF7" FT /protein_id="AGH18417.1" FT /translation="MDDETKKLKNKTKEPKEGDNVVAAESSFGFVNLNIDPTLIAMNDV FT LKLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGVT FT YTREGVEVDLSDKLWTDVVFGSKGIGNRTNALRVWGRTNDALYLAFCIQNRNLSYGGRP FT LDAGIPAGYPYPCAISLTGAGLTDLESAVYLQAKEQLLKKGGPDEVVVTNVRQLGEFNT FT R" XX SQ Sequence 672 BP; 189 A; 126 C; 177 G; 180 T; 0 other; kc590502 Length: 672 19-MAR-2013 Type: N Check: 5548 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaccaagg aaccgaaaga 51 aggcgacaat gtcgttgcgg ccgagtcttc tttcggtttt gtaaatttaa 101 acatcgatcc gactctgata gcgatgaacg atgtgctaaa gttgggtacc 151 caacagaatg ctgctttgaa tagagatttg tttcttacct tgaaagggaa 201 gtatcctaac ctctccgaca aagataaaga ctttcacata gctatgatgt 251 tatatcgttt agcggttaag agttcatcgt tacaaagcga cgatgatacc 301 acgggtgtga cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa 351 actttggaca gacgtcgtgt ttgggtctaa gggtattggt aaccgtacta 401 acgcccttcg agtctggggt agaactaacg atgcccttta tttggctttt 451 tgtatacaga accgcaattt gagttatggg ggacgtccgc tagatgcagg 501 aattccggcc gggtatccct acccgtgtgc gatttccttg accggagctg 551 gcttgactga tttagaaagt gcagtgtact tacaggctaa agagcaatta 601 ttaaagaagg gagggcctga tgaggtcgta gttactaatg tcaggcagct 651 tggggaattc aacacacgtt ga