Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate TP5 coat protein gene, complete cds.
ACC No: KC590503
Dated: 2013-03-19 | Length: 672 | CRC: 2016488831
ID KC590503; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC590503; XX DT 19-MAR-2013 (Rel. 116, Created) DT 19-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate TP5 coat protein gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Tarafdar A., Khatun D., Biswas K.K.; RT "Characterization of Citrus tristeza virus and determination of genetic RT variability in Northeast and South India"; RL Unpublished. XX RN [2] RP 1-672 RA Tarafdar A., Khatun D., Biswas K.K.; RT ; RL Submitted (08-FEB-2013) to the INSDC. RL Advanced Centre for Plant Virology, Division of Plant Pathology, Indian RL Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012, RL India XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /host="Citrus aurantifolia (Kagzi lime)" FT /isolate="TP5" FT /mol_type="genomic RNA" FT /country="India:Tirupati" FT /collected_by="K K Biswas" FT /collection_date="Oct-2010" FT /db_xref="taxon:12162" FT CDS 1. .672 FT /codon_start=1 FT /product="coat protein" FT /note="ORF7" FT /protein_id="AGH18418.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSMNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGII FT YTREGIEVDLPDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 193 A; 122 C; 174 G; 183 T; 0 other; kc590503 Length: 672 19-MAR-2013 Type: N Check: 4157 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg agacgaaaga 51 aggcgacgat gttgttgcag cagagtcttc tttcggttcc atgaacttac 101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca attgggaacc 151 caacagaacg ccgctttgaa cagagatttg tttcttactc tgaaagggaa 201 gtatcctaac ttgtctgaca aggataagga cttccactta gctatgatgt 251 tatatcgttt agcggttaag agttcatcgt tgcaaagtga tgacgacacc 301 acgggcataa tatatactcg ggagggtatt gaagtggatt tgcctgacaa 351 gctttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtacta 401 atgcccttcg agtctggggt aggactaacg atgcccttta tttagctttc 451 tgtagacaga atcgcaattt gagttatggt ggacgtccgc tagatgcagg 501 gattccggct ggatatcatt acctatgtgc agatttcttg accggagctg 551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa ggaacaattg 601 ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga