Sequence of DPV Scheffersomyces segobiensis virus L
Scheffersomyces segobiensis virus L isolate NRRL Y-11571, complete genome.
ACC No: KC610514
Dated: 2013-03-19 | Length: 4590 | CRC: -1026466158
ID KC610514; SV 1; linear; genomic RNA; STD; VRL; 4590 BP.
XX
AC KC610514;
XX
DT 19-MAR-2013 (Rel. 116, Created)
DT 19-MAR-2013 (Rel. 116, Last updated, Version 1)
XX
DE Scheffersomyces segobiensis virus L isolate NRRL Y-11571, complete genome.
XX
KW .
XX
OS Scheffersomyces segobiensis virus L
OC Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN [1]
RP 1-4590
RA Taylor D.J., Ballinger M.J., Bowman S.M., Bruenn J.A.;
RT "Virus-host co-evolution under a modified nuclear genetic code";
RL Peerj 0:0-0(2013).
XX
RN [2]
RP 1-4590
RA Taylor D.J., Ballinger M.J., Bowman S.M., Bruenn J.A.;
RT ;
RL Submitted (12-FEB-2013) to the INSDC.
RL Biological Sciences, State University of New York at Buffalo, 109 Cooke
RL Hall, Amherst, NY 14260, USA
XX
CC ##Assembly-Data-START##
CC Assembly Method :: CLC Assembly Cell v. 4.0.6
CC Sequencing Technology :: Illumina; Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .4590
FT /organism="Scheffersomyces segobiensis virus L"
FT /host="Scheffersomyces segobiensis"
FT /isolate="NRRL Y-11571"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Jun-2012"
FT /db_xref="taxon:1300323"
FT gene 41. .4542
FT /gene="pol"
FT CDS join(41. .1981,1981. .4542)
FT /codon_start=1
FT /ribosomal_slippage
FT /gene="pol"
FT /product="polyprotein"
FT /protein_id="AGG68772.1"
FT /translation="MSYQLFDQLTGPLANVLPNFKYLAKTVKYGIKADVDIGVTSEFTN
FT AYKRRGALFTNVLSPFGVFNAEVVRDPPIFDGINARFFNDYGEIDERAIAETLRLKGTY
FT RPNVIAELAPTIASCNSENHVSVLVNLLRFSIIKRSDPKDFKFVNDDLFYDDGHLAVSY
FT KNYLKREFNEELVFIFREGIQIERFSESTVVGDDFYCPNIENLSAREFNILLTLLGSIK
FT CDYPLRLAFSTPRLVDKLVLPLTTKHASYYEVVNDFTANEVDQIIRKYIFANRVETAFD
FT LAYLIVVTAMFAPLPRAIEANGWVSPVNLIKLPNVGSVRGLMPEMTGGQPLSKSPQKAL
FT TWLNYKQSPGRIAIHAIAACEAYYTGFFEVLTASPNGIEDTLTAIGVSSSVTATPYKMF
FT CESAAYRFGKEFDLIWLTNAGVDCYSHLLATEPAALSILAKVVDTELEGYDVYTTSAFG
FT EDTVHVITKEVKPALFPVLSMGINDDRYFANSLEYSATLYADHSEGVLATTESDHMNKA
FT LSILRIGGYDAVMTDRLSGLSYRNWAANSNGQVLPMLPPKLKGKSTYVIPFNTIVKRKK
FT SWMELGSLTDSVTMTAKINLRGYVIMTNGKLVSTYLPKYQTINVYPKSLNKEEMVAVEM
FT KTSATTIKYRYSGFFVGCESSGSTTCPFTIIVYGHPWVAAHRNIERRGWCSGRRLGECR
FT MSGLNYHNPVPLYVDENMAGTVPEKSRYVLVHVSNDDVPVHNIDYPMLIPYCGEYTIGK
FT RIKRRNIVCWYAKLDFISIYTPKLMSIVGGYISGNIRSGMTVENHRDFYMEFDKVIFNK
FT VTSDEIRELNEYVRSLDVTKITGDHHLFVNRQEVDTLLEEAMNLGKYNDRLAALMVLKD
FT VASRIGIDNRVSFITHLVYILIAPPHAFVHLLSLIGESTDAEDYASILKRESGAAKQLQ
FT TVFRSDLASLYELNVLVNRVDSVVDWNKEIDHRTNVKAVGISTEDVYKISTEIFKDAVR
FT EGRYPQRLEWQDYWVQRWSAMPNGSVISQYDEDIAIKKLLPFSARVKSAWFAAKTESNY
FT DYWLKRTPQIYASTSTKYEWGKVRALYGCDVTSFLHSDFGMTNCEDILPSYFPVGRKAN
FT EKYVRESIEKFRETVPVCFDYDDFNSQHSTSSMRTVLQAWLDVNQKYLTEEQVNSVEWT
FT RDSLDSILARFNSSGDTISLSGTLMSGWRLTSFMNTVLNRVYLVKANLFKHLVYALHNG
FT DDMFGGAVNMAKAVAIIRDAKAIGVRAQVSKTNLGTIGEFLRVDTRAIDPTNAQYLSRS
FT VATLVHGRVESSAPNDLRELVSAIITRSEEVISRGGDFRLINKLTQKTLDFAARLFNVD
FT NTIIDTMLSNHPVQGGMNKDAPVHLWRIERRTEPFERETLLARYSLIAPGLFNYVDRVK
FT EQFGVSENLIDKEELLYRAGVSLEKSRVYYELVIETTLGMDIYRALHGVWKSPGYVAPI
FT AKIRSLGLIPAKELRNLNSVPAHLIRTARNPILMMGTIF"
FT gene 41. .2125
FT /gene="cap"
FT CDS 41. .2125
FT /codon_start=1
FT /gene="cap"
FT /product="capsid"
FT /protein_id="AGG68770.1"
FT /translation="MSYQLFDQLTGPLANVLPNFKYLAKTVKYGIKADVDIGVTSEFTN
FT AYKRRGALFTNVLSPFGVFNAEVVRDPPIFDGINARFFNDYGEIDERAIAETLRLKGTY
FT RPNVIAELAPTIASCNSENHVSVLVNLLRFSIIKRSDPKDFKFVNDDLFYDDGHLAVSY
FT KNYLKREFNEELVFIFREGIQIERFSESTVVGDDFYCPNIENLSAREFNILLTLLGSIK
FT CDYPLRLAFSTPRLVDKLVLPLTTKHASYYEVVNDFTANEVDQIIRKYIFANRVETAFD
FT LAYLIVVTAMFAPLPRAIEANGWVSPVNLIKLPNVGSVRGLMPEMTGGQPLSKSPQKAL
FT TWLNYKQSPGRIAIHAIAACEAYYTGFFEVLTASPNGIEDTLTAIGVSSSVTATPYKMF
FT CESAAYRFGKEFDLIWLTNAGVDCYSHLLATEPAALSILAKVVDTELEGYDVYTTSAFG
FT EDTVHVITKEVKPALFPVLSMGINDDRYFANSLEYSATLYADHSEGVLATTESDHMNKA
FT LSILRIGGYDAVMTDRLSGLSYRNWAANSNGQVLPMLPPKLKGKSTYVIPFNTIVKRKK
FT SWMELGSLTDSVTMTAKINLRGYVIMTNGKLVSTYLPKYQTINVYPKSLNKEEMVAVEM
FT KTSATTIKYRYSGFLLAASQVEAPPARLQLLSTDILGSQPIETSSEEAGAVGDDLESVE
FT "
FT CDS <1969. .4542
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AGG68771.1"
FT /translation="IPVFGFFVGCESSGSTTCPFTIIVYGHPWVAAHRNIERRGWCSGR
FT RLGECRMSGLNYHNPVPLYVDENMAGTVPEKSRYVLVHVSNDDVPVHNIDYPMLIPYCG
FT EYTIGKRIKRRNIVCWYAKLDFISIYTPKLMSIVGGYISGNIRSGMTVENHRDFYMEFD
FT KVIFNKVTSDEIRELNEYVRSLDVTKITGDHHLFVNRQEVDTLLEEAMNLGKYNDRLAA
FT LMVLKDVASRIGIDNRVSFITHLVYILIAPPHAFVHLLSLIGESTDAEDYASILKRESG
FT AAKQLQTVFRSDLASLYELNVLVNRVDSVVDWNKEIDHRTNVKAVGISTEDVYKISTEI
FT FKDAVREGRYPQRLEWQDYWVQRWSAMPNGSVISQYDEDIAIKKLLPFSARVKSAWFAA
FT KTESNYDYWLKRTPQIYASTSTKYEWGKVRALYGCDVTSFLHSDFGMTNCEDILPSYFP
FT VGRKANEKYVRESIEKFRETVPVCFDYDDFNSQHSTSSMRTVLQAWLDVNQKYLTEEQV
FT NSVEWTRDSLDSILARFNSSGDTISLSGTLMSGWRLTSFMNTVLNRVYLVKANLFKHLV
FT YALHNGDDMFGGAVNMAKAVAIIRDAKAIGVRAQVSKTNLGTIGEFLRVDTRAIDPTNA
FT QYLSRSVATLVHGRVESSAPNDLRELVSAIITRSEEVISRGGDFRLINKLTQKTLDFAA
FT RLFNVDNTIIDTMLSNHPVQGGMNKDAPVHLWRIERRTEPFERETLLARYSLIAPGLFN
FT YVDRVKEQFGVSENLIDKEELLYRAGVSLEKSRVYYELVIETTLGMDIYRALHGVWKSP
FT GYVAPIAKIRSLGLIPAKELRNLNSVPAHLIRTARNPILMMGTIF"
XX
SQ Sequence 4590 BP; 1361 A; 625 C; 1100 G; 1504 T; 0 other;
kc610514 Length: 4590 19-MAR-2013 Type: N Check: 7286 ..
1 gatatttttc atagcgcgta ttaaacccaa agcaattaaa atgtcttatc
51 aattattcga tcaattaact ggaccattgg ctaatgtctt gcctaatttc
101 aaatatttgg ctaaaacagt caaatatgga atcaaggccg acgttgacat
151 tggtgtcact tctgaattca ctaatgctta taagcgtcgt ggagctttat
201 tcacgaacgt tttgagtcca tttggtgtct ttaatgcgga agtagttaga
251 gatcccccaa tttttgacgg gattaatgcg cggtttttta acgattatgg
301 tgaaatcgat gagcgagcta ttgcagagac gctcagactt aaaggtactt
351 acagacctaa tgttatcgca gaacttgcgc caactattgc gtcatgtaat
401 tctgagaatc atgtttctgt tcttgttaat ttgttgcgtt ttagtattat
451 taagcggagt gaccctaaag attttaagtt tgtcaatgat gatttatttt
501 atgatgatgg gcacttggca gtatcttata agaattattt gaaacgtgag
551 tttaatgagg aattagtttt tatttttaga gaaggtattc aaattgagag
601 attttctgaa tctacggttg ttggtgatga tttttattgt cctaatatcg
651 agaatttatc agctagagag tttaatattt tgttgacttt gttgggatcg
701 atcaagtgtg attatccttt gagattggct tttagtacac caaggttagt
751 agacaagttg gtattacctc ttactacgaa gcatgcttcg tattatgagg
801 tggttaatga ttttactgct aatgaggttg atcagattat caggaagtat
851 atttttgcaa atcgtgttga gactgctttt gatttagctt atttgattgt
901 ggttacagca atgtttgcac cactccctcg tgccattgag gcaaatgggt
951 gggtgagtcc tgttaacttg attaagttgc ctaacgttgg atcggttcgt
1001 gggttgatgc ctgaaatgac aggtgggcag cctttgtcga aaagtccaca
1051 aaaggctttg acttggttga attataagca atctcctggt cgtattgcga
1101 ttcatgcaat tgctgcatgt gaagcatatt acacaggttt ctttgaagtg
1151 ttgactgcta gtcctaatgg tattgaagat acgcttacag caattggagt
1201 gtcatcttct gtgacagcaa caccgtataa gatgttttgt gagtctgctg
1251 cttatcgttt tggtaaggaa tttgatctta tctggctgac aaatgctggt
1301 gttgattgtt attcgcactt gcttgcgact gaaccagctg ctttgtctat
1351 tttagcaaaa gtggttgata ctgagcttga aggttatgat gtatatacta
1401 ctagtgcttt tggtgaagat acggttcatg ttattactaa ggaagttaag
1451 cctgcgttgt ttcctgtttt gtcgatggga attaatgatg atcgttattt
1501 tgcgaattca cttgaatatt cagctacatt gtatgctgat catagtgaag
1551 gtgtgttggc aacaactgaa agtgatcata tgaataaggc tttatcaatt
1601 ttacgtattg gtggttatga tgcagtgatg actgataggt tgtcaggttt
1651 atcttatagg aactgggcgg ctaattcgaa cggtcaagtg ttgcctatgt
1701 taccacctaa gttaaaggga aagagcactt atgttatacc ttttaacaca
1751 attgttaaaa ggaagaagag ctggatggag ttaggtagtt tgactgattc
1801 tgtgacaatg actgcaaaaa ttaatttgag aggttatgtc attatgacta
1851 atggtaaatt ggtgtcaact tatttgccta agtatcaaac aattaacgtt
1901 tatccaaagt ctttgaataa ggaagagatg gtggcagttg aaatgaagac
1951 gagcgcaaca acaattaaat accggtattc gggttttttg ttggctgcga
2001 gtcaagtgga agcaccacct gcccgtttac aattattgtc tacggacatc
2051 cttgggtcgc agcccataga aacatcgagc gaagaggctg gtgcagtggg
2101 agacgacttg gagagtgtag aatgagtggt ttgaattatc acaatcctgt
2151 gccattatat gttgatgaga atatggcagg gacagtaccg gagaagtcaa
2201 ggtatgtatt ggtgcatgtt agtaatgatg atgtaccagt tcataatatt
2251 gattatccaa tgttaattcc atattgtgga gaatatacaa taggtaaacg
2301 tattaaacgt cgtaatattg tgtgttggta tgccaagctt gattttattt
2351 cgatatatac gccaaaattg atgtcaattg ttggaggcta tatttcaggt
2401 aatatcaggt cgggcatgac agtggagaat catcgtgatt tttatatgga
2451 gtttgacaaa gttatattta ataaggtgac aagtgatgag attcgtgaac
2501 ttaatgaata tgtgaggtct ttagatgtga caaagattac aggagatcat
2551 cacttatttg tgaacagaca agaagttgat acattgttgg aagaggcaat
2601 gaatttagga aaatacaatg atcgtttggc agcgttgatg gtattgaaag
2651 atgtggctag cagaataggt atagataatc gtgtgtcatt tataacacat
2701 ttggtttata ttttgatagc tccgccacat gcgtttgtac atttactatc
2751 tttgattggt gaatctacag atgctgaaga ttatgctagt attcttaagc
2801 gtgagagtgg tgctgcaaag caattacaga ctgtgtttag gagtgattta
2851 gcgtcgctat atgaattaaa tgtattagtg aatagagtgg attctgtggt
2901 tgattggaat aaagaaatag atcatagaac gaatgtgaag gctgtaggca
2951 ttagtacaga agatgtttac aagatttcaa cagaaatatt taaagatgca
3001 gtacgtgaag gaagatatcc acagcggtta gagtggcaag attactgggt
3051 tcaacggtgg tcagctatgc ctaatggttc ggttatcagc caatatgatg
3101 aagatattgc tatcaagaaa ttgttgccat ttagtgcaag ggttaagtca
3151 gcttggtttg ctgctaagac agaaagtaat tatgattatt ggttaaagag
3201 gacgcctcag atttatgctt ctacaagtac gaagtatgaa tggggtaaag
3251 tcagagcttt atatgggtgt gatgttactt cgtttttaca tagtgatttc
3301 ggcatgacta actgtgaaga tatattgcca tcttatttcc cagtggggcg
3351 taaggcaaat gaaaagtatg tgagagaatc aattgaaaag tttagagaaa
3401 ctgtacctgt gtgttttgat tatgatgatt ttaacagtca gcattctaca
3451 agtagtatga ggactgtgtt gcaagcgtgg cttgatgtta atcagaagta
3501 tttaactgaa gaacaggtga attcggtgga atggacgcgt gattcgctcg
3551 atagtatatt agcaagattt aactcttcgg gagacactat atcattgtca
3601 gggacattga tgagtggttg gcgattgaca tcgtttatga acacagtgtt
3651 gaatagagtg tatttagtta aagctaattt gtttaaacat ttagtatatg
3701 cattgcataa tggtgatgat atgtttggtg gtgcagtcaa tatggctaag
3751 gcagttgcta taattagaga tgctaaagct attggagtgc gtgctcaagt
3801 gtcaaagact aacttaggta caataggtga attcttgaga gtagatacga
3851 gagcaattga cccaacgaat gcacaatact tgagtcgaag tgttgcgaca
3901 ttagtgcatg ggcgtgttga gtcatcagca ccaaatgatt tgcgagagtt
3951 ggtgtctgct ataataacga gaagtgaaga agttattagt cgaggtggag
4001 attttagatt gatcaataaa ttaacacaaa aaacattaga ttttgcggca
4051 agattattta atgttgataa cactatcatt gacacgatgt tatcaaatca
4101 tccagtacaa ggtggtatga ataaagatgc gcctgtacat ctatggcgta
4151 ttgagaggag gacagagcct ttcgagagag agactttgtt ggcaaggtat
4201 tctctaatag cgccaggttt gttcaattat gttgataggg taaaagagca
4251 gtttggagtg agtgaaaatc ttatagataa agaggagttg ctttacagag
4301 caggtgtttc gttagaaaag tccagagtgt attacgagtt agtaatcgaa
4351 actacactag ggatggatat ctatcgtgca cttcatggag tatggaaaag
4401 ccctggttat gtggcaccta ttgcaaagat acgtagttta ggtttgatac
4451 ctgctaaaga attgcgtaat ttaaatagtg tgccagcaca tttaatcaga
4501 acagcgagaa atccaatact tatgatgggc acgatatttt agtaattaca
4551 gtatacagta aatcttgaat gtaattacta atatacagga