Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Flo193:08 segment DNA-A, complete sequence.
ACC No: KC706556
Dated: 2013-05-12 | Length: 2622 | CRC: 1328558220
ID KC706556; SV 1; circular; genomic DNA; STD; VRL; 2622 BP. XX AC KC706556; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Flo193:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2622 RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2622 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2622 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo193:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 199. .954 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /protein_id="AGH29708.1" FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQMFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(951. .1349) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /protein_id="AGH29709.1" FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN FT VIRAVRFATDKQYVNAVLENHSIKFKIY" FT CDS complement(1096. .1485) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /protein_id="AGH29711.1" FT /translation="MHNSSSSTPPSIKIQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST FT GSPQGLSQLPNLDDIPESFWDDIFK" FT CDS complement(1427. .2482) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /protein_id="AGH29710.1" FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN FT SPLYQNSTSGC" FT CDS complement(2032. .2325) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /protein_id="AGH29707.1" FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY" XX SQ Sequence 2622 BP; 691 A; 550 C; 601 G; 780 T; 0 other; kc706556 Length: 2622 12-MAY-2013 Type: N Check: 7510 .. 1 accggatggc cgcgggattt tttttaaggc ccattcagtt tgggccgctc 51 ttttgggcct tcacctttaa ttttaatgaa agtaaatttg gcccaatcat 101 gatgcatctg acaagctaag atatttacaa ctacttaacg cccaagttgc 151 ataacggcta taaattaaac gtgcatatgt cgttaacttt aattcaaaat 201 gcctaagcgc gatgccccat ggcgccacat ggctagtaca gttaagatta 251 gccggggcgt taatagttct cctcgagcag gagttgggcc acggtctaac 301 aaggcctctg actgggtaaa caggcccatg tacaggaagc ccaagatata 351 tcggatgtat agaacacccg atgttccaag aggttgtgaa ggcccatgta 401 aagtccaatc gtttgaacag cgtcacgata tctcccatac tggtaaggtg 451 atgtgcgtct ccgatgtcac ccgtggtaac ggtattacac atcgtgtggg 501 taagcgtttc tgtgttaagt ctgtgtatat tctgggtaag atatggatgg 551 atgagaacat caagttgaag aaccacacga acagtgccat gttttggttg 601 gtcagggacc gtagaccgta tggcactcct atggactttg gccagatgtt 651 taacatgttc gacaacgagc ctagcaccgc cactgtgaaa aacgatctcc 701 gtgatcgttt tcaagttatg cacaagttct atgctaaggt cacaggtgga 751 caatacgcaa gcaacgagca ggcgcttgtc aagcggttct ggaaggtcaa 801 caatcatgtc gtctataacc atcaagaagc cggaaagtac gagaatcata 851 cggagaacgc cctgttattg tatatggcat gtactcatgc ctcaaacccc 901 gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa 951 ttaataaatt ttgaatttta ttgaatgatt ctcgagtaca gcatttacat 1001 attgtttgtc tgtggcgaag cgtacagctc taattacatt attaactgaa 1051 ataacgccta gctgatcaat gtacaacata actaaatatt taaatctatt 1101 taaatatgtc atcccagaag ctctcaggga tgtcgtccag atttggaagt 1151 tgagataagc cttgtggaga cccagtactc tcctcaggtt gtggttgaac 1201 cgtatttgga cgtggtagac tctggtcctc gtgtatagta tgtcctcgac 1251 gttgtacatc ttgaaataaa ggggatttga tatttcccaa gtatacacgc 1301 cattctctgc ctgatgtgca gtgatgagtt cccctgtgcg tgaatccatg 1351 tcctgcgcaa tctatgtgta cgaaaatgga gcagccgcac tgtaaatcaa 1401 ttcgtcttct tcgtatagct ctcttcttag cagcccgatg ttgaattttg 1451 atagaggggg gagttgagga agatgaattg tgcattgtgc tttgtccaac 1501 tacttaatgc tgagttttca tccttgtcga ggaaacattt atagctggcc 1551 ccctcgccag gattgcagag cacgatgcat gggataccac ctttaatttg 1601 aactggcttt ccgtatttac agtttgattg ccaatccttt tgggccccaa 1651 tcaattcttt ccagtgcttt aactttagat agtgcggtgc gacatcatca 1701 atgacgttat actgcacatc gtttgagtag acctttgaat tgaaatcgag 1751 gtgaccactc aagtaattat gggaccctaa tgcacgtgac cacatcgttt 1801 tgccacttcg agaatcaccc tcgattatta tactgatagg tctctccggc 1851 cgcgcagcgg catctctccc gaaatagtca tctgcccaat cttgcatctc 1901 gacaggcacg ttagtgaacg acgagagtgg aaacggagga acccaaggtt 1951 ctggagcctt tgcgaaaata cgctctaaat ttgacctaat gttatgatgt 2001 tgaagcacga aatctttggg ttgttcctcc cttaatatat tgagtgcttc 2051 catgacagat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt 2101 gctgacctcc tctagttgat ctgccatcga tctggaaaac tccatgatca 2151 acgaagtctc cgtctttttc cacgtatgat ttgacatctg acgagctctt 2201 agctccctgt atgtttggat ggaaatgtgc tgacctactt ggggagacga 2251 ggtcgaagaa cttgttattt ttgcagttgt attttccttc gaattggatg 2301 agcacgtgga gatgaggttg cccatcttcg tgtagttctc tcgacacacg 2351 aatgaataat ttattagttg gtgtgtttag ggctaataat tgggaaagtg 2401 cttcttcttt ggaaagagaa cagtgtggat atgtcagaaa ataatttttg 2451 gaatttactc ggaaatgtct gggcggtggc atatttgtaa taatagatgg 2501 gcaccgattg gggatcacta aacttgctct agcaattggg gactggggtc 2551 ctatatatac tagaaccctc tatagaactt tcaatctcgt tcacacacgt 2601 ggcggccatc ctatataata tt