Sequence of DPV Tomato chlorotic mottle virus

Tomato chlorotic mottle virus isolate BR:Flo194:08 segment DNA-A, complete sequence.

ACC No: KC706557

Dated: 2013-05-12 | Length: 2623 | CRC: -1984401829

                
ID   KC706557; SV 1; circular; genomic DNA; STD; VRL; 2623 BP.
XX
AC   KC706557;
XX
DT   24-MAR-2013 (Rel. 116, Created)
DT   12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE   Tomato chlorotic mottle virus isolate BR:Flo194:08 segment DNA-A, complete
DE   sequence.
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KW   .
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OS   Tomato chlorotic mottle virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN   [1]
RP   1-2623
RX   PUBMED; 23487451.
RA   Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA   Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA   Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT   "Brazilian begomovirus populations are highly recombinant, rapidly
RT   evolving, and segregated based on geographical location";
RL   J. Virol. 87(10):5784-5799(2013).
XX
RN   [2]
RP   1-2623
RA   Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA   Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA   Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT   ;
RL   Submitted (26-FEB-2013) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, MG 36570-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman v. 7
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .2623
FT                   /organism="Tomato chlorotic mottle virus"
FT                   /segment="DNA-A"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="BR:Flo194:08"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:172391"
FT   CDS             199. .954
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AGH29713.1"
FT                   /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY
FT                   RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDCFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(951. .1349)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /protein_id="AGH29714.1"
FT                   /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYTRTRVY
FT                   HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN
FT                   VIRAVRFATDKQYVNAVLENHSIKFKIY"
FT   CDS             complement(1096. .1485)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /protein_id="AGH29716.1"
FT                   /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG
FT                   HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIHEDQSLPRPNTVQPQPEEST
FT                   GSPQGLSQLPNLDDIPESFWDDIFK"
FT   CDS             complement(1427. .2482)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /protein_id="AGH29715.1"
FT                   /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR
FT                   VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV
FT                   EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH
FT                   NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG
FT                   DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQCNVIDDVAPHYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN
FT                   SPLYQSSTSGC"
FT   CDS             complement(2032. .2325)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /protein_id="AGH29712.1"
FT                   /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR
FT                   QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY"
XX
SQ   Sequence 2623 BP; 689 A; 551 C; 600 G; 783 T; 0 other;

kc706557 Length: 2623  12-MAY-2013  Type: N  Check: 7901  ..

       1  accggatggc cgcgcgattt tttttaaggc ccattcagtt tgggccgctc
      51  ttttgggcct tcatctttaa ttttaatgaa agtaaatttg gcccaatcat
     101  gatgcatttg acaagctaag atatttacaa ctacttaacg cccaagttgc
     151  ataacggcta taaattaaac atgcatatgt cgttaacttt aattcaaaat
     201  gcctaagcgc gatgccccat ggcgccacat ggctagtaca gttaagatta
     251  gccggggcgt taatagttct cctcgagcag gagttgggcc acggtctaac
     301  aaggcctctg actgggtaaa caggcccatg tacaggaagc ccaagatata
     351  tcggatgtat agaacacccg atgttccaag aggttgtgaa ggcccatgta
     401  aagtccaatc gtttgaacag cgtcacgata tctcccatac tggtaaggtg
     451  atgtgcgtct ccgatgtcac ccgtggtaac ggtattacac atcgtgtggg
     501  taagcgtttc tgtgttaagt ctgtgtatat tctgggtaag atatggatgg
     551  atgagaatat caagttgaag aaccacacga acagtgccat gttttggttg
     601  gtcagggacc gtagaccgta tggcacccct atggactttg gccaggtgtt
     651  taacatgttc gacaacgagc ctagcaccgc cactgtgaaa aacgatctcc
     701  gtgattgttt tcaagttatg cacaagttct atgctaaggt cacaggtgga
     751  caatacgcaa gcaacgagca ggcgcttgtc aagcggttct ggaaggtcaa
     801  caatcatgtc gtctataacc atcaagaagc cggaaagtac gagaatcata
     851  cggagaacgc cctgttattg tatatggcat gtactcatgc ctcaaacccc
     901  gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa
     951  ttaataaatt ttgaatttta ttgaatgatt ctcgagtaca gcatttacat
    1001  attgtttgtc tgtggcgaag cgtacagctc taattacatt attaactgaa
    1051  ataacgccta gctgatcaat gtacaacata actaaatatt taaatctatt
    1101  taaatatgtc atcccagaag ctctcaggga tgtcgtccag atttggaagt
    1151  tgagataagc cttgtggaga cccagtactc tcctcaggtt gtggttgaac
    1201  cgtatttgga cgtggtagac tctggtcctc gtgtatagta tgtcctcgac
    1251  gttgtacatc ttgaaataaa ggggatttga tatttcccaa gtatacacgc
    1301  cattctctgc ctgatgtgca gtgatgagtt cccctgtgcg tgaatccatg
    1351  tcctgcgcaa tctatgtgta cgaaaatgga gcagccgcac tgtaaatcaa
    1401  ttcgtcttct tcgtatagct ctcttcttag cagcccgatg ttgaactttg
    1451  atagaggggg gagttgagga agatgaattg tgcattgtgc tttgtccaac
    1501  tacttaatgc tgagttttca tccttgtcga ggaaacattt atagctggcc
    1551  ccctcgccag gattgcagag cacgatgcat gggataccac ctttaatttg
    1601  aactggcttt ccgtatttac agtttgattg ccaatccttt tgggccccaa
    1651  tcaattcttt ccagtgcttt aactttagat agtgcggtgc gacatcatca
    1701  atgacgttac actgcacatc gtttgagtag acctttgaat tgaaatcgag
    1751  gtgaccactc aagtaattat gggaccctaa tgcacgtgac cacatcgttt
    1801  tgccacttcg agaatcaccc tcgattatta tactgatagg tctctccggc
    1851  cgcgcagcgg catctctccc gaaatagtca tctgcccaat cttgcatctc
    1901  gacaggcacg ttagtgaacg acgagagtgg aaacggagga acccaaggtt
    1951  ctggagcctt tgcgaaaata cgctctaaat ttgacctaat gttatgatgt
    2001  tgaagcacga aatctttggg ttgttcctcc cttaatatat tgagtgcttc
    2051  catgacagat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt
    2101  gctgacctcc tctagttgat ctgccatcga tctggaaaac tccatgatca
    2151  acgaagtctc cgtctttttc cacgtatgat ttgacatctg acgagctctt
    2201  agctccctgt atgtttggat ggaaatgtgc tgacctactt ggggagacga
    2251  ggtcgaagaa cttgttattt ttgcagttgt attttccttc gaattggatg
    2301  agcacgtgga gatgaggttg cccatcttcg tgtagttctc tcgacacacg
    2351  aatgaataat ttattagttg gtgtgtttag ggctaataat tgggaaagtg
    2401  cttcttcttt ggaaagagaa cagtgtggat atgtcagaaa ataatttttg
    2451  gaatttactc ggaaatgtct gggcggtggc atatttgtaa taatagttgg
    2501  gcaccgattg gggactctct aaacttgctc tagcaattgg ggactggggt
    2551  cctatatata ctagaaccct ctatagaact ttcaatctcg ttcacacacg
    2601  tggcggccat cctatataat att