Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Car231:08 segment DNA-B, complete sequence.
ACC No: KC706565
Dated: 2013-05-12 | Length: 2558 | CRC: -1647282801
ID KC706565; SV 1; circular; genomic DNA; STD; VRL; 2558 BP.
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AC KC706565;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato chlorotic mottle virus isolate BR:Car231:08 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato chlorotic mottle virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2558
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2558
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2558
FT /organism="Tomato chlorotic mottle virus"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Car231:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /db_xref="taxon:172391"
FT CDS 405. .1223
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH29744.1"
FT /translation="MRLILIILKHAIRILNMYFNNNKRRWLSTNRRNYVRYSTFKRSHS
FT VVRNDGKRRLGISNKPHDDSKMTSHRIHENQYGPDFVLGHNTAISTFITYPSLGKSEPN
FT RIKSYIKLKRLRFKGTVKIERVPTDLNMNGFPAKIDGVFSLVIVVDRKPHLSPSGSLYT
FT FDELFGARIHSHGNLAIISSLKDRFYIRHVAKRVLSVEKDSNMIDVEGTTTLSSRRYNC
FT WANFRDFDHESCNGVYANISKNALLVYYCWMSETVSKASTFVSFDLDYIG"
FT CDS complement(1305. .2186)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH29743.1"
FT /translation="MSSNLVVPPNAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAK
FT LSRSCMKIDHCVIEYRQQVPINATGSIIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFSDKDIDFVHVGYGTWERKLVRCASTSRFGLNCPIEIKPGESWASRSTIGLSSSCVD
FT SERGNDLHPHKELNRLDTLILDPGESASIVAAQRTQSNITLSLAQLNEIVKSTVQECIN
FT TNCTPSEPKSLK"
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SQ Sequence 2558 BP; 737 A; 451 C; 516 G; 854 T; 0 other;
kc706565 Length: 2558 12-MAY-2013 Type: N Check: 6846 ..
1 accggatggc cgcgcgatcg ttctctctct tttaatcctg tccgtccacg
51 tgtttaatga atttagttga gcgcgaattt gaagtccgtg aattgtgttg
101 agcgctttat tttagttccg ctaacggatg atcgccacgt gtattaatat
151 aagaccgttg aattaaatat gataagcgga actttttcga atttcgcatt
201 gtgtttttta gtgctgatta attatgaaat tcgaccgtta gattgcacac
251 gatagtgacg tattggtcat cgtgattgaa tactgtgtca ttagtacaag
301 tatttgttct agggtgcaat cataaaacat atgtaacgtg gaccagttaa
351 atattgtctg tataaccaag ataacccatt gatccaatta ctactatcta
401 tataatgaga ttgatattga taattttaaa acatgcaata agaattttga
451 acatgtattt taataataat aagcgtcgtt ggttgtccac caaccgtcgt
501 aattacgtgc gatattctac gtttaaaagg tcacattctg tggtacgcaa
551 tgatgggaaa cgtcgattag gtatttcaaa caaaccccat gacgatagta
601 agatgacttc gcataggatt catgaaaacc aatatgggcc tgactttgta
651 ttgggccaca acacagcgat atccacgttt ataacttacc catctcttgg
701 taaaagtgag cccaatcgta ttaagtcgta cattaagctg aaacgtctgc
751 gctttaaagg tactgttaag attgaacgtg ttcctaccga tttgaacatg
801 aatggatttc ctgctaagat tgatggagta ttttctttgg ttattgttgt
851 cgatcgtaaa cctcatttga gtccttctgg aagtctctac acattcgatg
901 agttatttgg tgctaggatc catagccatg gaaatttagc gataatctct
951 tctctgaagg atcgttttta catacgtcat gttgctaaac gtgtcttgtc
1001 agtggagaag gatagtaata tgattgacgt tgaggggact acaacactgt
1051 ctagtaggcg ttataattgc tgggcaaatt ttagagattt cgatcatgaa
1101 tcttgtaatg gtgtatatgc taacataagc aagaatgccc tattagttta
1151 ttattgttgg atgtcggaaa cagtttccaa agcatctaca tttgtatcat
1201 ttgatctcga ttatattgga taattatttg taaattatat attcgataag
1251 ttaaaatatg ttaataaatt gtcgtattct attaaacact caagaaagct
1301 taatttattt taaagacttt ggttcagatg gagtacaatt ggtattgata
1351 cattcttgga ctgtcgactt aacaatctca tttaattggg ccaacgataa
1401 ggtaatgttg gactgcgtcc tctgtgctgc aacgattgac gctgattctc
1451 cggggtctag aattaacgtg tccaatctgt tcagctcttt atgtggatgt
1501 agatcgttgc cccgttcgga gtccacacat gaactgctga gaccaattgt
1551 acttctggat gcccatgact ctccaggttt aatttctatt gggcagttaa
1601 gcccaaatct ggatgtcgaa gcgcatctga ctaatttcct ctcccatgtc
1651 ccgtaaccca catgaacaaa atcgatatcc ttatctgaaa actgcttcga
1701 caatatttta actgttggtg cccggaaagg gatatctact gagtgttttg
1751 ctgtggatag ttttaacttg cccttgaatt tggcgaaatg ggtcctttgg
1801 tgcacattcg tatcgctaac ccggtagtat aatttccatg gtattgggtc
1851 cttcagggaa aagaatgacg acgagaaata atgtaaatct atgttacatc
1901 taattgggaa ggtccatgac gcttgcaatg actcgttgtc cgtcattctc
1951 ttgtcatgta tttctactat gatagatcct gtggcgttta tcgggacttg
2001 ctgtctgtat tcgatgacgc aatgatctat tttcatgcag ctccgactaa
2051 gtttagcact aatttgagat gccgtagatg gaaattgtag aacaatttca
2101 gtaagatcat gagacaattg atattcatct ctttgagact caacataatt
2151 aaaagcattt ggagggacaa ccaaattaga actcattata ataaaaaaag
2201 gctgcgcagc tgaatcgata actggaatta ataagcttaa atgatatgaa
2251 ttcactaagc agaatgtcag aagacaatat aatttgttta tgatgatagt
2301 cagtactaac tggtttgtat ttatagacgg attgaatcct gagtttatac
2351 gaggtaccac ttcttatcga cgtcgttttt taactgaatg catccttgta
2401 aatttaagca atggcatatt tgtaataata gttgggcacc gattggggtc
2451 ttctcaaact ctctctagca attggggact ggggtcctat atatactaga
2501 accctctata gaactttcaa tctcgttcac acacgtggcg gccatcctat
2551 ataatatt