Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Car231:08 segment DNA-B, complete sequence.
ACC No: KC706565
Dated: 2013-05-12 | Length: 2558 | CRC: -1647282801
ID KC706565; SV 1; circular; genomic DNA; STD; VRL; 2558 BP. XX AC KC706565; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato chlorotic mottle virus isolate BR:Car231:08 segment DNA-B, complete DE sequence. XX KW . XX OS Tomato chlorotic mottle virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2558 RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2558 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (26-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2558 FT /organism="Tomato chlorotic mottle virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /isolate="BR:Car231:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /db_xref="taxon:172391" FT CDS 405. .1223 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /protein_id="AGH29744.1" FT /translation="MRLILIILKHAIRILNMYFNNNKRRWLSTNRRNYVRYSTFKRSHS FT VVRNDGKRRLGISNKPHDDSKMTSHRIHENQYGPDFVLGHNTAISTFITYPSLGKSEPN FT RIKSYIKLKRLRFKGTVKIERVPTDLNMNGFPAKIDGVFSLVIVVDRKPHLSPSGSLYT FT FDELFGARIHSHGNLAIISSLKDRFYIRHVAKRVLSVEKDSNMIDVEGTTTLSSRRYNC FT WANFRDFDHESCNGVYANISKNALLVYYCWMSETVSKASTFVSFDLDYIG" FT CDS complement(1305. .2186) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /protein_id="AGH29743.1" FT /translation="MSSNLVVPPNAFNYVESQRDEYQLSHDLTEIVLQFPSTASQISAK FT LSRSCMKIDHCVIEYRQQVPINATGSIIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFSDKDIDFVHVGYGTWERKLVRCASTSRFGLNCPIEIKPGESWASRSTIGLSSSCVD FT SERGNDLHPHKELNRLDTLILDPGESASIVAAQRTQSNITLSLAQLNEIVKSTVQECIN FT TNCTPSEPKSLK" XX SQ Sequence 2558 BP; 737 A; 451 C; 516 G; 854 T; 0 other; kc706565 Length: 2558 12-MAY-2013 Type: N Check: 6846 .. 1 accggatggc cgcgcgatcg ttctctctct tttaatcctg tccgtccacg 51 tgtttaatga atttagttga gcgcgaattt gaagtccgtg aattgtgttg 101 agcgctttat tttagttccg ctaacggatg atcgccacgt gtattaatat 151 aagaccgttg aattaaatat gataagcgga actttttcga atttcgcatt 201 gtgtttttta gtgctgatta attatgaaat tcgaccgtta gattgcacac 251 gatagtgacg tattggtcat cgtgattgaa tactgtgtca ttagtacaag 301 tatttgttct agggtgcaat cataaaacat atgtaacgtg gaccagttaa 351 atattgtctg tataaccaag ataacccatt gatccaatta ctactatcta 401 tataatgaga ttgatattga taattttaaa acatgcaata agaattttga 451 acatgtattt taataataat aagcgtcgtt ggttgtccac caaccgtcgt 501 aattacgtgc gatattctac gtttaaaagg tcacattctg tggtacgcaa 551 tgatgggaaa cgtcgattag gtatttcaaa caaaccccat gacgatagta 601 agatgacttc gcataggatt catgaaaacc aatatgggcc tgactttgta 651 ttgggccaca acacagcgat atccacgttt ataacttacc catctcttgg 701 taaaagtgag cccaatcgta ttaagtcgta cattaagctg aaacgtctgc 751 gctttaaagg tactgttaag attgaacgtg ttcctaccga tttgaacatg 801 aatggatttc ctgctaagat tgatggagta ttttctttgg ttattgttgt 851 cgatcgtaaa cctcatttga gtccttctgg aagtctctac acattcgatg 901 agttatttgg tgctaggatc catagccatg gaaatttagc gataatctct 951 tctctgaagg atcgttttta catacgtcat gttgctaaac gtgtcttgtc 1001 agtggagaag gatagtaata tgattgacgt tgaggggact acaacactgt 1051 ctagtaggcg ttataattgc tgggcaaatt ttagagattt cgatcatgaa 1101 tcttgtaatg gtgtatatgc taacataagc aagaatgccc tattagttta 1151 ttattgttgg atgtcggaaa cagtttccaa agcatctaca tttgtatcat 1201 ttgatctcga ttatattgga taattatttg taaattatat attcgataag 1251 ttaaaatatg ttaataaatt gtcgtattct attaaacact caagaaagct 1301 taatttattt taaagacttt ggttcagatg gagtacaatt ggtattgata 1351 cattcttgga ctgtcgactt aacaatctca tttaattggg ccaacgataa 1401 ggtaatgttg gactgcgtcc tctgtgctgc aacgattgac gctgattctc 1451 cggggtctag aattaacgtg tccaatctgt tcagctcttt atgtggatgt 1501 agatcgttgc cccgttcgga gtccacacat gaactgctga gaccaattgt 1551 acttctggat gcccatgact ctccaggttt aatttctatt gggcagttaa 1601 gcccaaatct ggatgtcgaa gcgcatctga ctaatttcct ctcccatgtc 1651 ccgtaaccca catgaacaaa atcgatatcc ttatctgaaa actgcttcga 1701 caatatttta actgttggtg cccggaaagg gatatctact gagtgttttg 1751 ctgtggatag ttttaacttg cccttgaatt tggcgaaatg ggtcctttgg 1801 tgcacattcg tatcgctaac ccggtagtat aatttccatg gtattgggtc 1851 cttcagggaa aagaatgacg acgagaaata atgtaaatct atgttacatc 1901 taattgggaa ggtccatgac gcttgcaatg actcgttgtc cgtcattctc 1951 ttgtcatgta tttctactat gatagatcct gtggcgttta tcgggacttg 2001 ctgtctgtat tcgatgacgc aatgatctat tttcatgcag ctccgactaa 2051 gtttagcact aatttgagat gccgtagatg gaaattgtag aacaatttca 2101 gtaagatcat gagacaattg atattcatct ctttgagact caacataatt 2151 aaaagcattt ggagggacaa ccaaattaga actcattata ataaaaaaag 2201 gctgcgcagc tgaatcgata actggaatta ataagcttaa atgatatgaa 2251 ttcactaagc agaatgtcag aagacaatat aatttgttta tgatgatagt 2301 cagtactaac tggtttgtat ttatagacgg attgaatcct gagtttatac 2351 gaggtaccac ttcttatcga cgtcgttttt taactgaatg catccttgta 2401 aatttaagca atggcatatt tgtaataata gttgggcacc gattggggtc 2451 ttctcaaact ctctctagca attggggact ggggtcctat atatactaga 2501 accctctata gaactttcaa tctcgttcac acacgtggcg gccatcctat 2551 ataatatt