Sequence of DPV Tomato common mosaic virus
Tomato common mosaic virus isolate BR:Coi13:07 segment DNA-B, complete sequence.
ACC No: KC706596
Dated: 2013-05-12 | Length: 2499 | CRC: -996489255
ID KC706596; SV 1; circular; genomic DNA; STD; VRL; 2499 BP.
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AC KC706596;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato common mosaic virus isolate BR:Coi13:07 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato common mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2499
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2499
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (01-MAR-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2499
FT /organism="Tomato common mosaic virus"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Coi13:07"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2007"
FT /db_xref="taxon:536084"
FT CDS 412. .1182
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH29872.1"
FT /translation="MYFSKNKRSWASSYRRISARYLTSKRSLGLLRNDSKRRVDIFSKS
FT QEEIKMSSHRIHETQYGPEFLLGNNSAISTFITYPCLGKTEPSRTRSYIKLKRLRFNGT
FT VKIERVHTDVNMNGIPSKIDGVFTIVVVIDRKPHLTSAGGLYTFDELFGARIHSHGNLA
FT ITPLLKDRFYIRHVVKRVLSVEKDTTMLDLDGTTTLSNRRYNCWANFRDLDHESCNGNY
FT ANICKNAILVYYCWMSDTVSKASTFVSFDLDYVG"
FT CDS complement(1273. .2154)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH29871.1"
FT /translation="MSSQLVVPPNAFNYVESHRDEYQLSHDLTEIVLQFPSTASQISAK
FT LSRSCMKIDHCVIEYRQQVPINAAGSVIVEIHDKRMTDNESLQASWTFPLRCNIDLHYF
FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFSDKDIDFAHVGYGTWERKLVRCASTNKFGPSGPIEIKAGETWASRSTVGLSSSCMD
FT TDKSNDLNPYRDLNRLGTTFLDPGDSASIVAAQRTQSNITLSLAQLNDIVRTTVQECIN
FT TNCTPLEPKSLK"
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SQ Sequence 2499 BP; 749 A; 441 C; 502 G; 807 T; 0 other;
kc706596 Length: 2499 12-MAY-2013 Type: N Check: 1030 ..
1 acaggatggc cgcgcgatga ccgtcctctc gctaaatcct gaccctccac
51 gtggctaata tttttaattt agcgagaatt tgagttccga aaatgagttg
101 agcgcctctt ttgagttccg ctaacggatg gctgccacgt gcaattatct
151 attaccgtta aatataatat aataagcgga actttagttc gtacgatgac
201 agccgtattg cactaacatt agtattattc atatttctcc cgaaatatta
251 atccacatgg tcaatatatt attttgacta tcgtacagga tatgctaggt
301 gtaccaatta aatgtggact tcattaacaa tttaacgtta aatgcaacaa
351 gtgtgtctat ataagttggc tattaatact ttcgagcctt atccacagtt
401 aatttaatga tatgtatttt tcaaaaaata agcgtagttg ggcatctagt
451 tatcgtcgta tatccgcacg atatcttact tctaaaaggt cacttggttt
501 actacgtaat gatagtaaac gtcgagtgga tatttttagt aaatcccagg
551 aagaaattaa gatgtcgtcc catcgaatac atgaaacaca atatgggcct
601 gaatttttat tagggaataa ttcggcgata tccacattta ttacgtatcc
651 ttgtcttggc aagacagagc ccagtcgtac taggtcatat atcaaattaa
701 aacgcctgcg ttttaatggc actgttaaaa ttgaacgtgt acacacagac
751 gtgaacatga atgggatacc ttccaagatt gatggagtat ttaccattgt
801 tgttgttata gatcgaaaac ctcacttgac ttctgcgggt ggtctctaca
851 cattcgatga gctgtttggt gctaggattc acagtcatgg aaatttggca
901 ataactccat tattaaagga tcgtttttat atccgtcatg ttgtcaaacg
951 tgtgttgtca gtggagaagg atacgactat gcttgatctt gatgggacga
1001 caacattgtc taataggcgt tataactgtt gggctaattt tagggatctt
1051 gatcatgaat catgtaatgg aaattatgca aatatttgca agaacgctat
1101 attagtctat tattgttgga tgtctgacac agtgtcaaag gcatctacat
1151 ttgtgtcatt tgacctagat tatgttggat aaatttatat ataaatttgc
1201 attgtaattt gtctttaatc aagatttaat aagacattgt tgaataactt
1251 agtaataacc ataaattaca atttatttca aagactttgg ttccaaaggt
1301 gtacagttgg tgttaataca ttcttggaca gttgtcctaa caatatcatt
1351 taactgggct aaggataacg taatgttgga ctgcgtcctt tgtgccgcaa
1401 cgattgaagc tgaatcacct gggtcaagaa atgttgtgcc caatctgttt
1451 aggtctctat atggattgag atcgttgctt ttatcagtgt ccatacatga
1501 actgctaaga ccaactgtac ttctggaggc ccatgtttct ccagccttaa
1551 tttctattgg gccggaaggc ccaaatttgt tagtcgatgc acacctgact
1601 aattttcgtt cccatgttcc gtacccaaca tgagcaaagt cgatatcctt
1651 atctgaaaac tgcttcgaca atatcttcac tgttggtgcc cggaaaggga
1701 tatctacaga gtgtttagct gtggatagtt ttaacttgcc cttgaatttt
1751 gcgaaatgtg ttctttggtg tacatttgta tcactaaccc tatagtatag
1801 tttccatgga atggggtctt taagcgagaa gaaagatgct gagaaataat
1851 gtaagtctat gttacatcta agagggaaag tccatgacgc ctgcaatgac
1901 tcgttgtctg tcattcgttt gtcatgaatt tcaactatga cagacccagc
1951 tgcatttata ggcacttgct gtctgtattc aatgacacaa tggtcgattt
2001 tcatacagct gcgactaagt ttagcactta tttgagacgc cgtagaagga
2051 aattgtagaa caatttcagt caagtcatga gacagctgat attcatcccg
2101 gtgtgattca acataattaa aagcattcgg aggaacaact aactgagaac
2151 tcattataaa aaaaaagggc tgcgcagccg aaagcaagtg aaatcgataa
2201 gccaaaaatg aataaaccac cgtatagtta aagatgaaga tagatagtcc
2251 accctgaagg tgtatatgtt gtaaggaagt ttaataaata atttaatatg
2301 ggatgttacc cctgcttcta tttatagccc acaatatgta ataagtattt
2351 aatatgaaaa tggcattttt gtaaatatag gtgaggacac caggggttgc
2401 tctctacttc tgtgctattt gctggtgtcc tggtgtccca tttatactag
2451 aagtctctag ggtaatctca ggggcaaaag cggccatcca tataatatt