Sequence of DPV Tomato mild mosaic virus
Tomato mild mosaic virus isolate BR:Vic14:10 segment DNA-B, complete sequence.
ACC No: KC706609
Dated: 2013-05-12 | Length: 2672 | CRC: -1117415973
ID KC706609; SV 1; circular; genomic DNA; STD; VRL; 2672 BP. XX AC KC706609; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato mild mosaic virus isolate BR:Vic14:10 segment DNA-B, complete DE sequence. XX KW . XX OS Tomato mild mosaic virus OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus; OC unclassified Begomovirus. XX RN [1] RP 1-2672 RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2672 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (15-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .2672 FT /organism="Tomato mild mosaic virus" FT /segment="DNA-B" FT /host="Sida urens" FT /isolate="BR:Vic14:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:536086" FT CDS 519. .1289 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /protein_id="AGH29920.1" FT /translation="MYPVKYRRGWSTTQRRSHPRTPVFKRFYGVKRADGKRRPSNSMKA FT HDEPKMTAQRIHENQFGQEFMMVQNTAISTYISFPNLGKTEPNRSRSYIKLKRLRFKGT FT VKIERVQPDVNMDGSVPKTEGVFSLVVVVDRKPHLGPSGCLHTFDELFGARIHSHGNLS FT ITPSLKDRYYIRHVTKHVLSAEKDTMMVNLEGTTSLSNRRVSCWAGFKDHDHDSCNGVY FT ANISKNALLVYYCWMSDIMSKASTFVSYDLDYIG" FT CDS complement(1351. .2232) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /protein_id="AGH29919.1" FT /translation="MESQLANPPNAFNYIESQRDEYQLSHDLTEIVLQFPSTASQISAR FT LSRSCMKIDHCVIEYRQQVPINATGAVVVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFTDKDVDFCHVGYGRWERKPVRSASASTIGLRSPIQLRPGESWAVRSTVGANPSDAE FT SDIIETSHPYRELNRLGTTMLDPGESASIVGAQRAQSNITMSLGQLNELLRNTVQECIN FT SNCVPSQAKSLN" XX SQ Sequence 2672 BP; 707 A; 583 C; 652 G; 730 T; 0 other; kc706609 Length: 2672 12-MAY-2013 Type: N Check: 1398 .. 1 accggatggc cgcgcgattt tttccccccc ctacgtggcg ctctggaggt 51 cgttcgatcc gatcgaacgt gtccccactg gtgttctctc tcccctggtg 101 cccgttggat ctgctatgtt ccaaatcagt tgagcgcgtt tttggagtcc 151 gcgaaatggg ttcagcgcat tttttgagtt ccgcctattg gatgctgaca 201 cgtcgcatcc tatatatgta gacgcgcgct caactgttag ctgttgtcag 251 ttcgcgatat cagctgtaga ccgttggata aatctgacat gcaatccagc 301 tggattgcat attgcaactt gaattatttg ggcgcgactg acacaagacg 351 gccccattgt acatctccgt tagccaattg aacagctact atggtgacaa 401 gataaataat tgaatgacca ggaatttaat atttaaattc cgtctgtgag 451 gacttattac cacgtctatt tacatcagca accactgtta accaatatat 501 tagcataatt aactcagcat gtatcctgtt aagtatagac gtggctggtc 551 gactacccaa cgacgaagtc atcctcgaac cccagtgttc aagcgatttt 601 atggcgtgaa gcgtgcagat gggaaacgtc gacctagtaa ttcaatgaag 651 gcccatgacg agcccaaaat gacagcccag cggatacatg agaaccagtt 701 tgggcaagag ttcatgatgg tccagaatac agcaatttct acgtacatat 751 cctttcccaa tcttggtaag acggaaccga accggtctag gtcatatatt 801 aagctaaaac gactgcgttt taaagggact gtgaagatag aacgtgttca 851 gccagatgtc aacatggacg gttcggtccc gaaaaccgaa ggtgtgttct 901 ctctcgtagt ggttgtggat cgtaagcctc atttgggccc ttctggatgt 951 ttacacacct ttgacgagct atttggtgca aggatccaca gccatgggaa 1001 cctatctatt actccttcat tgaaggaccg ctactacata cgtcatgtga 1051 ccaaacatgt actctcggct gaaaaggaca ccatgatggt caacctcgaa 1101 gggacgacat ccctatctaa caggcgtgtt agttgttggg ccggttttaa 1151 ggaccatgat catgactcat gtaatggggt ttatgctaac ataagcaaga 1201 acgccctgtt agtttattac tgttggatgt cggatattat gtccaaggca 1251 tcgacatttg tatcctatga tctggattat atcggttgat caggaaataa 1301 taattcagta attattatta gttaacagga aatttacaat aaccatacat 1351 ttaatttaaa gacttggcct gcgaaggcac acagttactg ttaatgcact 1401 cctggaccgt gttcctcagc agctcgttta attgtcccag agacatcgtt 1451 atgttggact gggccctctg ggctccgacg atggaagccg attcacctgg 1501 gtccaacatg gttgtaccca gtctgttcag ctccctgtat ggatgcgatg 1551 tctctattat atcggattcc gcatccgatg gattggcacc tacggtgctc 1601 ctgacagccc acgactctcc tggcctaagt tgtattgggc tgcgaagccc 1651 aattgttgag gcggatgcgg atcggactgg tttcctctcc catcttccgt 1701 atcccacgtg gcagaaatcg acatccttgt cggtaaactg tttggacagg 1751 atcttgactg tcggagccct gaaaggaata tccacggagt gtttagccgt 1801 cgacagcttc agtttacctt tgaatttggc gaagtgggtc ctctgatgga 1851 cgttcgtgtc gcaaactctg tagtacagct tccatggaat tgggtctttg 1901 agggagaaga atgaagatga aaagtagtgg agatcgatgt tacacctgat 1951 cgggaaagtc cacgacgcct gtaacgactc attgtccgtc atcctcttgt 2001 cgtgaatctc cactaccacc gccccagtag cgttaatcgg aacctgctgc 2051 ctgtactcta tgacgcagtg gtcgattttc atacagctac gactgagtct 2101 ggcactgatt tgagaggcgg tggacggaaa ctgcagtacg atctcagtta 2151 ggtcatgaga cagctggtac tcgtcccttt gcgactctat ataattgaag 2201 gcgttcggag gattagctaa ctgagattcc attgtttctg attggtcgcg 2251 cagcgacagt gatcgaccaa agtgatcagc agaagagaat agctgcgaat 2301 gcgataagga attaatgttt agagaagagt aaagtgaagg agatcacaca 2351 gagaaagaag ttaattagga caattaaaca agtttaatgg ctcataagga 2401 taagaaaagg aaaaggttac agaagaatta gggatttaat tctggaagga 2451 aagagtaaag ttggggttct gatactcata tgggcgttaa ttgggagtta 2501 tatttataac taaacccggg aagggtttga tggcattctt gtaaataagg 2551 ccgtgtaccc ccaattgctc cagctccaaa actctcatga attgggggta 2601 ctgggggtca atatatagta agaagttcct aaggcttaaa aggggcacgt 2651 ggcggccatc cgctataata tt