Sequence of DPV Tomato yellow vein streak virus
Tomato yellow vein streak virus isolate BR:Pda50:05 segment DNA-B, complete sequence.
ACC No: KC706660
Dated: 2013-05-12 | Length: 2506 | CRC: -379127111
ID KC706660; SV 1; circular; genomic DNA; STD; VRL; 2506 BP.
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AC KC706660;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato yellow vein streak virus isolate BR:Pda50:05 segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato yellow vein streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2506
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2506
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2506
FT /organism="Tomato yellow vein streak virus"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Pda50:05"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2005"
FT /db_xref="taxon:55216"
FT CDS 339. .1109
FT /codon_start=1
FT /product="nuclear shuttle protein"
FT /note="NSP"
FT /protein_id="AGH30116.1"
FT /translation="MSPTSYRRGWSFAQRRGYSRKYLFKRPYYFKRTDGKHRSGNSNQV
FT NEDIKLSQQRIHENQFGPEFVMGHNTAISTFITFPSLCKTEPGRSRAYIKLKRLRFKGT
FT VKIERVHADVTMDGIIPKIEGVFTMVVVVDRKPHLSSSGCLHTFDELFGARIHSHGNLA
FT VTPSLKERFYIRHVWKKVISVEKDSMMVDLEGTTSVSNKRFNCWSAFKDLDRDSCNGVY
FT ANISKNALLVYYCWMSDTMSTASSFVSFDLDYVG"
FT CDS complement(1273. .2154)
FT /codon_start=1
FT /product="movement protein"
FT /note="MP"
FT /protein_id="AGH30117.1"
FT /translation="MDSQVVCPPNAFNYIESRRDEYQLSHDLTEIILQFPSKATQLSAR
FT LNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTENESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYKVSDSNVHQMTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIMS
FT KQFTVNDIDFSHVGYGKWERKLIRSASTSKFGLHGPIELNPGESWATRSTIETTQLEAQ
FT SDLGEALHPYKDLNRLGTAILDPGDSASIIGAQRTQSNITLSMAQLNDLVRSTVQECIK
FT SNCIPPQPKSLK"
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SQ Sequence 2506 BP; 741 A; 391 C; 530 G; 844 T; 0 other;
kc706660 Length: 2506 12-MAY-2013 Type: N Check: 8465 ..
1 accggatggc cgcgcgattt ttttttggtg gacccattct gaaagtaatt
51 gagcgcattt ttgacgtccg cgaattgagt tgagcgcaat atttgagttc
101 cgaaaatata gttagtggag taactttaat ttgaaataaa ttactgcttt
151 tacggtaacc aatcagcttg cgattcagga gcctatttat ctattacatt
201 tatgtcagtg tcaaggtata cggtattctt cacgtggacc aattaattgt
251 tcgctatgga gtctaactaa ttaatatatg aagtgatgat ttttttatat
301 aaattccata tatattgtga tagatatgat atcgcatcat gtctcctact
351 agctatagac gtggttggtc gtttgctcaa cgacgaggtt attctcgtaa
401 atatttgttc aaacgtcctt attattttaa acgtacagat gggaaacacc
451 gatcgggtaa ctctaatcag gtcaatgagg atattaagtt gtcgcaacag
501 cgtatacatg agaaccagtt tggtccggaa tttgtaatgg gtcataatac
551 agcaatatcg acttttatta cttttcctag tctatgtaaa actgaaccgg
601 gcagatccag ggcatatatt aagttgaaac gtttacgttt caaaggtacc
651 gtcaagattg agcgtgttca tgctgatgtg actatggatg gtataatacc
701 aaagattgaa ggcgtattta ctatggttgt cgttgttgat cgtaaacccc
751 atttgagttc atctggttgt ctgcatacat ttgatgagct ctttggtgca
801 cggatccaca gtcatggcaa tttggctgta actccatctt tgaaagagcg
851 tttttacata cgtcacgttt ggaagaaagt aatatctgtt gagaaggaca
901 gtatgatggt tgatcttgaa ggaacgacat cagtgagtaa taagcgtttt
951 aattgttggt ctgcttttaa agatcttgat cgtgattcat gtaatggtgt
1001 ttatgcgaat ataagcaaga acgccctttt agtttattac tgttggatgt
1051 cggatacgat gtctacagcg tcatcatttg tatcgttcga tcttgattat
1101 gttggttaaa aattaaaata ttaatgtatt tatacttaca tgagaaaata
1151 aatcatttaa gaaaacgtga gaaaataaat catttaagca aacgtaatca
1201 cataatataa ttataattac tgaaatattg gctgcgcagc tgcatgcaaa
1251 aaaaatattg gcaacttgat atttacttca atgatttggg ttgtggagga
1301 atacagttag atttaataca ttcttggact gttgacctaa caagatcgtt
1351 taattgggcc attgatagcg tgatgttgga ttgcgttctt tgggccccaa
1401 ttattgaagc cgaatcacct ggatctaata tggcagttcc tagcctattt
1451 agatctttgt atggatgtaa cgcctcccct aggtctgatt gggcttctaa
1501 ttgggtcgtc tctattgtac tccttgtggc ccatgactct cctggattta
1551 gttctattgg gccatgaagc ccaaatttag aagttgatgc cgatcttatc
1601 aattttctct cccactttcc ataacctaca tgagagaagt cgatgtcatt
1651 gacggtaaat tgtttggaca taatcttcac tgtcggtgcc ctgaaaggta
1701 tatcaaccga atgttttgcc gttgatagct tcaattttcc tttgaatttt
1751 gcgaagtggg tcatctgatg aacgtttgag tcagaaacct tataatatag
1801 cttccatgga attgggtctt tgagtgagaa aaatgatgac gagaaatagt
1851 ggaggtctat gttgcacctg attggaaaag tccatgacgc ctgtaaggat
1901 tcattttcag tcatcctctt gtcatgaatc tccacaatta ctgaaccagt
1951 tgcgttgatt ggtacctgtt gtctatattc aatgacgcaa tgatcaatct
2001 tcatacagct tcgatttagt cttgcactta attgagttgc ttttgatgga
2051 aattgcaata tgatttcggt aaggtcatga gatagttgat attcatcacg
2101 acgagattct atataattaa aggcgttggg tgggcaaact acttgagagt
2151 ccatatatat tacaagattg aataagtgta gagaataatt tagaaaaaga
2201 aaaggaaaca gtagtagtga tagataagat gagtgaatgg atgtgatatt
2251 atacagaatt gtcgatcctt atatagactc ttaactggtt atggataatt
2301 tggttaaaca atactgagta tacttactaa ataagtttat aaagttatgg
2351 tgaaaagctt taatggtggt atttatgtaa ataaggaagt gagacccgat
2401 agctctcctt caaacttggc gaaatgaatt ggggaatggg tctcaatata
2451 tagtagagtc cattatagaa tataattgcc acgtggcggc catccgatat
2501 aatatt